Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06086

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06085 and MPMX19_06086 are separated by 46 nucleotidesMPMX19_06086 and MPMX19_06087 are separated by 263 nucleotidesMPMX19_06087 and MPMX19_06088 are separated by 46 nucleotides MPMX19_06085: MPMX19_06085 - hypothetical protein, at 260,470 to 261,483 _06085 MPMX19_06086: MPMX19_06086 - Citrate synthase, at 261,530 to 262,861 _06086 MPMX19_06087: MPMX19_06087 - hypothetical protein, at 263,125 to 263,370 _06087 MPMX19_06088: MPMX19_06088 - Sensor histidine kinase RcsC, at 263,417 to 267,214 _06088 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1at 261.098 kb on + strand, within MPMX19_06085at 261.850 kb on - strand, within MPMX19_06086at 261.850 kb on - strand, within MPMX19_06086at 261.850 kb on - strand, within MPMX19_06086at 261.886 kb on - strand, within MPMX19_06086at 261.886 kb on - strand, within MPMX19_06086at 261.886 kb on - strand, within MPMX19_06086at 261.895 kb on - strand, within MPMX19_06086at 261.895 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.222 kb on - strand, within MPMX19_06086at 262.240 kb on - strand, within MPMX19_06086at 262.240 kb on - strand, within MPMX19_06086at 262.240 kb on - strand, within MPMX19_06086at 262.285 kb on - strand, within MPMX19_06086at 262.285 kb on - strand, within MPMX19_06086at 262.285 kb on - strand, within MPMX19_06086at 262.285 kb on - strand, within MPMX19_06086at 262.285 kb on - strand, within MPMX19_06086at 262.285 kb on - strand, within MPMX19_06086at 262.289 kb on - strand, within MPMX19_06086at 262.289 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.384 kb on - strand, within MPMX19_06086at 262.492 kb on - strand, within MPMX19_06086at 262.492 kb on - strand, within MPMX19_06086at 262.492 kb on - strand, within MPMX19_06086at 262.492 kb on - strand, within MPMX19_06086at 262.645 kb on - strand, within MPMX19_06086at 262.702 kb on - strand, within MPMX19_06086at 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.112 kb on - strandat 263.112 kb on - strandat 263.112 kb on - strandat 263.112 kb on - strandat 263.112 kb on - strandat 263.112 kb on - strandat 263.112 kb on - strandat 263.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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261,098 + MPMX19_06085 0.62 +1.1
261,850 - MPMX19_06086 0.24 -1.0
261,850 - MPMX19_06086 0.24 +0.6
261,850 - MPMX19_06086 0.24 -0.8
261,886 - MPMX19_06086 0.27 -0.5
261,886 - MPMX19_06086 0.27 -0.0
261,886 - MPMX19_06086 0.27 -1.6
261,895 - MPMX19_06086 0.27 -0.7
261,895 - MPMX19_06086 0.27 -2.0
262,222 - MPMX19_06086 0.52 -1.2
262,222 - MPMX19_06086 0.52 -0.2
262,222 - MPMX19_06086 0.52 -0.2
262,222 - MPMX19_06086 0.52 -0.5
262,222 - MPMX19_06086 0.52 +0.0
262,222 - MPMX19_06086 0.52 -0.0
262,222 - MPMX19_06086 0.52 -0.8
262,222 - MPMX19_06086 0.52 +0.7
262,222 - MPMX19_06086 0.52 -1.1
262,222 - MPMX19_06086 0.52 -1.5
262,222 - MPMX19_06086 0.52 -0.7
262,222 - MPMX19_06086 0.52 +0.8
262,222 - MPMX19_06086 0.52 -1.0
262,240 - MPMX19_06086 0.53 -2.1
262,240 - MPMX19_06086 0.53 +0.1
262,240 - MPMX19_06086 0.53 -1.9
262,285 - MPMX19_06086 0.57 +1.2
262,285 - MPMX19_06086 0.57 -1.0
262,285 - MPMX19_06086 0.57 -1.5
262,285 - MPMX19_06086 0.57 -1.4
262,285 - MPMX19_06086 0.57 +0.5
262,285 - MPMX19_06086 0.57 -2.2
262,289 - MPMX19_06086 0.57 -1.6
262,289 - MPMX19_06086 0.57 -1.2
262,384 - MPMX19_06086 0.64 -0.2
262,384 - MPMX19_06086 0.64 -0.5
262,384 - MPMX19_06086 0.64 -0.5
262,384 - MPMX19_06086 0.64 -1.1
262,384 - MPMX19_06086 0.64 -1.6
262,384 - MPMX19_06086 0.64 -0.8
262,384 - MPMX19_06086 0.64 -0.6
262,384 - MPMX19_06086 0.64 +0.2
262,492 - MPMX19_06086 0.72 -0.9
262,492 - MPMX19_06086 0.72 +0.5
262,492 - MPMX19_06086 0.72 +0.6
262,492 - MPMX19_06086 0.72 -0.3
262,645 - MPMX19_06086 0.84 -1.3
262,702 - MPMX19_06086 0.88 -1.5
263,044 - -0.8
263,044 - -0.1
263,044 - -0.7
263,044 - +1.0
263,112 - -1.0
263,112 - -0.5
263,112 - +0.8
263,112 - +0.7
263,112 - -0.6
263,112 - +0.6
263,112 - -0.8
263,112 - +0.2

Or see this region's nucleotide sequence