Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05838 and MPMX19_05839 are separated by 69 nucleotides MPMX19_05839 and MPMX19_05840 are separated by 161 nucleotides
MPMX19_05838: MPMX19_05838 - hypothetical protein, at 569,370 to 570,341
_05838
MPMX19_05839: MPMX19_05839 - Chemoreceptor glutamine deamidase CheD, at 570,411 to 571,061
_05839
MPMX19_05840: MPMX19_05840 - hypothetical protein, at 571,223 to 572,704
_05840
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.551 kb on + strand, within MPMX19_05838 at 569.551 kb on + strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 570.113 kb on - strand, within MPMX19_05838 at 570.121 kb on + strand, within MPMX19_05838 at 570.121 kb on + strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.409 kb on + strand at 570.410 kb on - strand at 570.410 kb on - strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.773 kb on - strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.976 kb on + strand, within MPMX19_05839 at 570.977 kb on - strand, within MPMX19_05839 at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.136 kb on - strand at 571.208 kb on + strand at 571.208 kb on + strand at 571.209 kb on - strand at 571.209 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 569,551 + MPMX19_05838 0.19 -1.2 569,551 + MPMX19_05838 0.19 +1.2 569,552 - MPMX19_05838 0.19 +0.1 569,552 - MPMX19_05838 0.19 -0.2 569,552 - MPMX19_05838 0.19 -1.5 569,552 - MPMX19_05838 0.19 -0.2 569,782 + MPMX19_05838 0.42 +0.5 569,782 + MPMX19_05838 0.42 -0.0 569,782 + MPMX19_05838 0.42 -1.5 569,782 + MPMX19_05838 0.42 +0.8 569,782 + MPMX19_05838 0.42 -2.0 569,782 + MPMX19_05838 0.42 -1.0 569,782 + MPMX19_05838 0.42 +0.0 569,782 + MPMX19_05838 0.42 -0.6 569,782 + MPMX19_05838 0.42 -1.0 569,782 + MPMX19_05838 0.42 -0.5 569,782 + MPMX19_05838 0.42 -1.0 569,782 + MPMX19_05838 0.42 -1.2 569,782 + MPMX19_05838 0.42 -0.9 569,783 - MPMX19_05838 0.42 -0.8 569,783 - MPMX19_05838 0.42 -1.1 569,783 - MPMX19_05838 0.42 -1.5 569,783 - MPMX19_05838 0.42 -0.9 570,113 - MPMX19_05838 0.76 +0.2 570,121 + MPMX19_05838 0.77 -0.3 570,121 + MPMX19_05838 0.77 -1.5 570,122 - MPMX19_05838 0.77 -1.8 570,122 - MPMX19_05838 0.77 -0.5 570,122 - MPMX19_05838 0.77 -1.4 570,122 - MPMX19_05838 0.77 +0.9 570,409 + -1.8 570,410 - +0.0 570,410 - -1.2 570,463 + +0.3 570,463 + -1.4 570,463 + -0.5 570,463 + -0.4 570,463 + -1.0 570,463 + -1.4 570,463 + -1.5 570,463 + +1.1 570,464 - -1.8 570,464 - +0.2 570,464 - -2.0 570,464 - +0.3 570,464 - +0.1 570,464 - +0.5 570,464 - +0.2 570,464 - +0.1 570,464 - -0.1 570,464 - +0.2 570,464 - -0.3 570,613 + MPMX19_05839 0.31 +2.2 570,613 + MPMX19_05839 0.31 +1.5 570,613 + MPMX19_05839 0.31 -1.4 570,613 + MPMX19_05839 0.31 +0.4 570,613 + MPMX19_05839 0.31 -0.9 570,613 + MPMX19_05839 0.31 -1.2 570,613 + MPMX19_05839 0.31 -0.7 570,613 + MPMX19_05839 0.31 +0.2 570,613 + MPMX19_05839 0.31 +0.5 570,613 + MPMX19_05839 0.31 -0.0 570,613 + MPMX19_05839 0.31 -0.0 570,614 - MPMX19_05839 0.31 -0.1 570,614 - MPMX19_05839 0.31 -0.2 570,614 - MPMX19_05839 0.31 +0.4 570,614 - MPMX19_05839 0.31 +0.4 570,614 - MPMX19_05839 0.31 -0.6 570,614 - MPMX19_05839 0.31 +0.1 570,773 - MPMX19_05839 0.56 +0.7 570,856 + MPMX19_05839 0.68 -0.5 570,856 + MPMX19_05839 0.68 +1.5 570,856 + MPMX19_05839 0.68 +0.8 570,856 + MPMX19_05839 0.68 -0.3 570,856 + MPMX19_05839 0.68 -1.5 570,857 - MPMX19_05839 0.69 -0.3 570,857 - MPMX19_05839 0.69 +0.0 570,857 - MPMX19_05839 0.69 +0.4 570,857 - MPMX19_05839 0.69 -2.8 570,857 - MPMX19_05839 0.69 -0.2 570,857 - MPMX19_05839 0.69 +0.5 570,976 + MPMX19_05839 0.87 +0.2 570,977 - MPMX19_05839 0.87 +1.0 571,097 + +0.2 571,097 + +0.1 571,097 + +0.1 571,097 + -2.7 571,097 + -0.8 571,097 + -1.2 571,097 + +0.4 571,097 + +0.7 571,097 + +0.8 571,097 + -0.2 571,098 - -1.7 571,098 - -0.3 571,098 - +0.5 571,098 - -0.0 571,098 - +0.2 571,098 - +0.6 571,098 - -0.6 571,098 - -0.8 571,098 - -0.9 571,098 - +0.8 571,098 - -0.6 571,098 - +0.1 571,136 - -0.6 571,208 + -0.2 571,208 + +0.4 571,209 - +0.1 571,209 - -1.0 571,215 + -0.0 571,215 + -1.4 571,215 + -0.4 571,215 + -1.2 571,215 + -0.2 571,215 + +1.3 571,215 + -0.4 571,215 + -0.3 571,215 + +1.5 571,215 + -2.1 571,215 + +0.6 571,215 + +0.9 571,215 + +0.2 571,215 + +1.4 571,215 + -0.2 571,215 + -1.7 571,215 + +0.9 571,215 + -1.5 571,216 - +1.0 571,216 - -1.4 571,216 - -1.2 571,216 - -0.5 571,216 - -0.2 571,216 - -0.7 571,216 - +1.1 571,216 - +0.2 571,216 - +0.7 571,216 - -0.2 571,216 - -1.2 571,216 - -0.1 571,227 + +0.1 571,227 + -0.3 571,227 + +0.3 571,227 + -0.2 571,227 + -0.5 571,227 + +0.8 571,227 + -0.4 571,227 + -0.7 571,227 + -2.3 571,227 + +1.0 571,227 + -0.4 571,227 + -0.9 571,227 + +0.8 571,228 - -0.5 571,228 - -1.2 571,228 - -0.9 571,228 - -0.0 571,431 + MPMX19_05840 0.14 -0.1 571,431 + MPMX19_05840 0.14 -0.6 571,431 + MPMX19_05840 0.14 -0.1 571,431 + MPMX19_05840 0.14 -0.2 571,431 + MPMX19_05840 0.14 -1.1 571,431 + MPMX19_05840 0.14 -0.2 571,431 + MPMX19_05840 0.14 -0.1 571,431 + MPMX19_05840 0.14 -1.4 571,431 + MPMX19_05840 0.14 -0.3 571,431 + MPMX19_05840 0.14 +0.2 571,431 + MPMX19_05840 0.14 -1.7 571,432 - MPMX19_05840 0.14 +0.9 571,432 - MPMX19_05840 0.14 +0.2 571,432 - MPMX19_05840 0.14 +0.5 571,432 - MPMX19_05840 0.14 +1.2 571,432 - MPMX19_05840 0.14 -0.3 571,432 - MPMX19_05840 0.14 -0.5 571,432 - MPMX19_05840 0.14 -0.5 571,811 + MPMX19_05840 0.40 +0.4 571,811 + MPMX19_05840 0.40 +0.3 571,811 + MPMX19_05840 0.40 -0.0 571,811 + MPMX19_05840 0.40 +0.4 571,812 - MPMX19_05840 0.40 -0.7 571,812 - MPMX19_05840 0.40 +0.3 571,812 - MPMX19_05840 0.40 -0.1 571,812 - MPMX19_05840 0.40 -0.9 571,812 - MPMX19_05840 0.40 -1.0
Or see this region's nucleotide sequence