Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05008 and MPMX19_05009 are separated by 139 nucleotides MPMX19_05009 and MPMX19_05010 are separated by 28 nucleotides MPMX19_05010 and MPMX19_05011 overlap by 4 nucleotides MPMX19_05011 and MPMX19_05012 are separated by 214 nucleotides
MPMX19_05008: MPMX19_05008 - hypothetical protein, at 490,620 to 491,768
_05008
MPMX19_05009: MPMX19_05009 - hypothetical protein, at 491,908 to 492,243
_05009
MPMX19_05010: MPMX19_05010 - Oxygen-dependent coproporphyrinogen-III oxidase, at 492,272 to 493,159
_05010
MPMX19_05011: MPMX19_05011 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 493,156 to 493,716
_05011
MPMX19_05012: MPMX19_05012 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 493,931 to 494,500
_05012
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 491.452 kb on + strand, within MPMX19_05008 at 491.530 kb on + strand, within MPMX19_05008 at 491.530 kb on + strand, within MPMX19_05008 at 491.530 kb on + strand, within MPMX19_05008 at 491.530 kb on + strand, within MPMX19_05008 at 491.530 kb on + strand, within MPMX19_05008 at 491.530 kb on + strand, within MPMX19_05008 at 491.531 kb on - strand, within MPMX19_05008 at 491.531 kb on - strand, within MPMX19_05008 at 491.531 kb on - strand, within MPMX19_05008 at 491.626 kb on + strand, within MPMX19_05008 at 491.666 kb on - strand at 491.666 kb on - strand at 491.666 kb on - strand at 491.666 kb on - strand at 491.666 kb on - strand at 491.666 kb on - strand at 491.768 kb on + strand at 491.768 kb on + strand at 491.768 kb on + strand at 491.807 kb on - strand at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.467 kb on - strand, within MPMX19_05011 at 493.511 kb on + strand, within MPMX19_05011 at 493.511 kb on + strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.712 kb on + strand at 493.712 kb on + strand at 493.712 kb on + strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.768 kb on - strand at 493.768 kb on - strand at 493.768 kb on - strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.770 kb on - strand at 493.792 kb on + strand at 493.792 kb on + strand at 493.792 kb on + strand at 493.793 kb on - strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 491,452 + MPMX19_05008 0.72 +0.4 491,530 + MPMX19_05008 0.79 -0.2 491,530 + MPMX19_05008 0.79 -0.2 491,530 + MPMX19_05008 0.79 +1.8 491,530 + MPMX19_05008 0.79 -1.1 491,530 + MPMX19_05008 0.79 +1.4 491,530 + MPMX19_05008 0.79 +0.5 491,531 - MPMX19_05008 0.79 +0.2 491,531 - MPMX19_05008 0.79 -0.9 491,531 - MPMX19_05008 0.79 -0.1 491,626 + MPMX19_05008 0.88 -0.1 491,666 - -0.2 491,666 - -0.5 491,666 - -1.0 491,666 - +1.3 491,666 - -0.7 491,666 - -0.4 491,768 + -0.0 491,768 + -0.8 491,768 + -0.8 491,807 - +0.2 493,406 + MPMX19_05011 0.45 -1.0 493,406 + MPMX19_05011 0.45 +0.8 493,406 + MPMX19_05011 0.45 -0.3 493,406 + MPMX19_05011 0.45 -0.7 493,406 + MPMX19_05011 0.45 -0.2 493,407 - MPMX19_05011 0.45 -0.2 493,407 - MPMX19_05011 0.45 -0.0 493,407 - MPMX19_05011 0.45 -0.7 493,407 - MPMX19_05011 0.45 -0.1 493,467 - MPMX19_05011 0.55 +0.5 493,511 + MPMX19_05011 0.63 -2.8 493,511 + MPMX19_05011 0.63 -1.0 493,512 - MPMX19_05011 0.63 -0.8 493,512 - MPMX19_05011 0.63 +1.1 493,512 - MPMX19_05011 0.63 -0.0 493,512 - MPMX19_05011 0.63 +1.0 493,512 - MPMX19_05011 0.63 -0.1 493,512 - MPMX19_05011 0.63 -1.7 493,512 - MPMX19_05011 0.63 -1.4 493,512 - MPMX19_05011 0.63 -0.1 493,712 + -2.7 493,712 + -0.2 493,712 + +0.5 493,713 - -0.2 493,713 - -1.2 493,713 - -0.0 493,713 - -0.3 493,713 - -0.2 493,713 - -0.5 493,767 + +0.4 493,767 + -0.3 493,767 + +1.2 493,767 + +0.6 493,767 + -0.2 493,767 + +0.2 493,768 - +0.3 493,768 - -1.4 493,768 - -0.5 493,769 + +0.9 493,769 + -1.5 493,769 + -0.7 493,769 + -0.8 493,770 - +0.3 493,792 + -1.5 493,792 + -1.4 493,792 + -1.2 493,793 - +1.1 493,862 + -3.0 493,862 + -1.3 493,862 + +0.6 493,862 + -0.2 493,930 + +0.5 493,930 + -0.2 493,930 + +0.8 493,930 + +0.2
Or see this region's nucleotide sequence