Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04433

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04432 and MPMX19_04433 are separated by 424 nucleotidesMPMX19_04433 and MPMX19_04434 are separated by 141 nucleotides MPMX19_04432: MPMX19_04432 - Quinone oxidoreductase 1, at 796,456 to 797,454 _04432 MPMX19_04433: MPMX19_04433 - Transcriptional repressor IclR, at 797,879 to 798,796 _04433 MPMX19_04434: MPMX19_04434 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 798,938 to 799,813 _04434 Position (kb) 797 798 799Strain fitness (log2 ratio) -2 -1 0 1 2at 797.156 kb on + strand, within MPMX19_04432at 797.157 kb on - strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.474 kb on + strandat 797.474 kb on + strandat 797.475 kb on - strandat 798.123 kb on + strand, within MPMX19_04433at 798.123 kb on + strand, within MPMX19_04433at 798.124 kb on - strand, within MPMX19_04433at 798.124 kb on - strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.504 kb on + strand, within MPMX19_04433at 798.504 kb on + strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.876 kb on + strandat 798.877 kb on - strandat 798.877 kb on - strandat 798.877 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.723 kb on - strand, within MPMX19_04434

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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797,156 + MPMX19_04432 0.70 -0.5
797,157 - MPMX19_04432 0.70 +0.1
797,285 + MPMX19_04432 0.83 +0.1
797,285 + MPMX19_04432 0.83 -1.4
797,285 + MPMX19_04432 0.83 -1.2
797,285 + MPMX19_04432 0.83 -1.2
797,285 + MPMX19_04432 0.83 -1.2
797,285 + MPMX19_04432 0.83 -0.9
797,286 - MPMX19_04432 0.83 +1.9
797,286 - MPMX19_04432 0.83 -1.0
797,286 - MPMX19_04432 0.83 +1.1
797,286 - MPMX19_04432 0.83 -0.2
797,286 - MPMX19_04432 0.83 -0.5
797,286 - MPMX19_04432 0.83 -0.4
797,474 + -0.8
797,474 + -1.5
797,475 - -1.9
798,123 + MPMX19_04433 0.27 -0.6
798,123 + MPMX19_04433 0.27 -0.3
798,124 - MPMX19_04433 0.27 -0.1
798,124 - MPMX19_04433 0.27 -2.1
798,315 + MPMX19_04433 0.47 -0.1
798,315 + MPMX19_04433 0.47 -0.8
798,315 + MPMX19_04433 0.47 -2.3
798,315 + MPMX19_04433 0.47 -0.1
798,315 + MPMX19_04433 0.47 -0.5
798,315 + MPMX19_04433 0.47 -0.7
798,315 + MPMX19_04433 0.47 -0.8
798,315 + MPMX19_04433 0.47 -0.3
798,316 - MPMX19_04433 0.48 -1.5
798,316 - MPMX19_04433 0.48 +0.9
798,316 - MPMX19_04433 0.48 -1.1
798,316 - MPMX19_04433 0.48 -2.2
798,316 - MPMX19_04433 0.48 -1.0
798,316 - MPMX19_04433 0.48 +0.3
798,316 - MPMX19_04433 0.48 -0.1
798,316 - MPMX19_04433 0.48 -0.1
798,316 - MPMX19_04433 0.48 -1.8
798,444 + MPMX19_04433 0.62 -0.5
798,444 + MPMX19_04433 0.62 -2.2
798,444 + MPMX19_04433 0.62 +1.0
798,444 + MPMX19_04433 0.62 -0.4
798,444 + MPMX19_04433 0.62 -1.1
798,444 + MPMX19_04433 0.62 -0.8
798,444 + MPMX19_04433 0.62 -0.6
798,444 + MPMX19_04433 0.62 -0.9
798,444 + MPMX19_04433 0.62 -0.7
798,444 + MPMX19_04433 0.62 -1.1
798,445 - MPMX19_04433 0.62 -0.6
798,445 - MPMX19_04433 0.62 -1.3
798,445 - MPMX19_04433 0.62 +0.1
798,445 - MPMX19_04433 0.62 -1.3
798,445 - MPMX19_04433 0.62 +0.3
798,445 - MPMX19_04433 0.62 +0.3
798,445 - MPMX19_04433 0.62 -1.2
798,445 - MPMX19_04433 0.62 -1.9
798,445 - MPMX19_04433 0.62 -0.3
798,445 - MPMX19_04433 0.62 +0.4
798,445 - MPMX19_04433 0.62 -1.2
798,445 - MPMX19_04433 0.62 -0.3
798,495 + MPMX19_04433 0.67 -0.5
798,495 + MPMX19_04433 0.67 +0.2
798,495 + MPMX19_04433 0.67 -0.9
798,495 + MPMX19_04433 0.67 -0.8
798,495 + MPMX19_04433 0.67 -0.9
798,495 + MPMX19_04433 0.67 +0.3
798,495 + MPMX19_04433 0.67 -1.4
798,495 + MPMX19_04433 0.67 -0.4
798,495 + MPMX19_04433 0.67 -0.1
798,496 - MPMX19_04433 0.67 -0.3
798,496 - MPMX19_04433 0.67 -0.0
798,496 - MPMX19_04433 0.67 -1.4
798,496 - MPMX19_04433 0.67 -0.1
798,496 - MPMX19_04433 0.67 -0.4
798,496 - MPMX19_04433 0.67 -1.1
798,496 - MPMX19_04433 0.67 +0.5
798,504 + MPMX19_04433 0.68 -1.1
798,504 + MPMX19_04433 0.68 +0.2
798,505 - MPMX19_04433 0.68 +0.1
798,505 - MPMX19_04433 0.68 +0.3
798,505 - MPMX19_04433 0.68 -0.7
798,505 - MPMX19_04433 0.68 -0.3
798,876 + -1.6
798,877 - +0.9
798,877 - +0.0
798,877 - -1.9
798,965 - -0.9
798,965 - -1.0
798,965 - +0.3
798,965 - -0.5
799,599 + MPMX19_04434 0.75 -0.9
799,599 + MPMX19_04434 0.75 -0.3
799,599 + MPMX19_04434 0.75 +0.6
799,599 + MPMX19_04434 0.75 -0.2
799,599 + MPMX19_04434 0.75 -0.5
799,599 + MPMX19_04434 0.75 +0.5
799,599 + MPMX19_04434 0.75 -2.3
799,599 + MPMX19_04434 0.75 -0.9
799,600 - MPMX19_04434 0.76 -0.6
799,600 - MPMX19_04434 0.76 +1.2
799,600 - MPMX19_04434 0.76 -0.1
799,600 - MPMX19_04434 0.76 -0.5
799,600 - MPMX19_04434 0.76 -0.7
799,600 - MPMX19_04434 0.76 +0.5
799,600 - MPMX19_04434 0.76 -0.3
799,600 - MPMX19_04434 0.76 -0.7
799,600 - MPMX19_04434 0.76 -0.1
799,600 - MPMX19_04434 0.76 -0.3
799,723 - MPMX19_04434 0.90 -1.3

Or see this region's nucleotide sequence