Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04153 and MPMX19_04154 are separated by 665 nucleotides MPMX19_04154 and MPMX19_04155 are separated by 153 nucleotides
MPMX19_04153: MPMX19_04153 - Type I secretion system membrane fusion protein PrsE, at 465,742 to 467,097
_04153
MPMX19_04154: MPMX19_04154 - hypothetical protein, at 467,763 to 468,581
_04154
MPMX19_04155: MPMX19_04155 - hypothetical protein, at 468,735 to 471,026
_04155
Position (kb) 467
468
469 Strain fitness (log2 ratio) -2
-1
0
1
2 at 466.921 kb on + strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 467.044 kb on + strand at 467.044 kb on + strand at 467.044 kb on + strand at 467.045 kb on - strand at 467.045 kb on - strand at 467.045 kb on - strand at 467.095 kb on + strand at 467.095 kb on + strand at 467.095 kb on + strand at 467.095 kb on + strand at 467.096 kb on - strand at 467.096 kb on - strand at 467.244 kb on + strand at 467.282 kb on - strand at 467.282 kb on - strand at 467.286 kb on + strand at 467.289 kb on + strand at 467.562 kb on + strand at 467.596 kb on + strand at 467.596 kb on + strand at 467.596 kb on + strand at 467.596 kb on + strand at 467.617 kb on - strand at 467.617 kb on - strand at 467.650 kb on + strand at 467.651 kb on - strand at 467.670 kb on - strand at 467.716 kb on + strand at 467.716 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.768 kb on + strand at 467.768 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.798 kb on + strand at 467.798 kb on + strand at 467.799 kb on - strand at 467.799 kb on - strand at 467.799 kb on - strand at 467.840 kb on + strand at 467.873 kb on + strand, within MPMX19_04154 at 467.873 kb on + strand, within MPMX19_04154 at 467.873 kb on + strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.144 kb on - strand, within MPMX19_04154 at 468.150 kb on + strand, within MPMX19_04154 at 468.150 kb on + strand, within MPMX19_04154 at 468.150 kb on + strand, within MPMX19_04154 at 468.151 kb on - strand, within MPMX19_04154 at 469.554 kb on + strand, within MPMX19_04155 at 469.554 kb on + strand, within MPMX19_04155 at 469.554 kb on + strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 466,921 + MPMX19_04153 0.87 -2.0 466,922 - MPMX19_04153 0.87 -1.0 466,922 - MPMX19_04153 0.87 -0.3 466,922 - MPMX19_04153 0.87 -0.5 466,922 - MPMX19_04153 0.87 -0.1 466,924 + MPMX19_04153 0.87 -0.7 466,924 + MPMX19_04153 0.87 -1.6 466,924 + MPMX19_04153 0.87 -1.0 466,924 + MPMX19_04153 0.87 +0.8 466,924 + MPMX19_04153 0.87 -1.1 466,924 + MPMX19_04153 0.87 -0.9 466,924 + MPMX19_04153 0.87 -0.4 466,924 + MPMX19_04153 0.87 +0.8 466,925 - MPMX19_04153 0.87 +0.6 466,925 - MPMX19_04153 0.87 -0.1 466,925 - MPMX19_04153 0.87 -0.2 466,925 - MPMX19_04153 0.87 -0.2 466,925 - MPMX19_04153 0.87 -0.6 466,925 - MPMX19_04153 0.87 +0.2 466,925 - MPMX19_04153 0.87 +0.3 466,925 - MPMX19_04153 0.87 +0.3 466,925 - MPMX19_04153 0.87 -0.5 466,925 - MPMX19_04153 0.87 -0.3 466,925 - MPMX19_04153 0.87 -0.8 466,925 - MPMX19_04153 0.87 -0.4 466,925 - MPMX19_04153 0.87 -0.3 467,044 + -1.4 467,044 + +0.2 467,044 + -1.6 467,045 - -0.3 467,045 - -2.0 467,045 - +0.3 467,095 + +0.8 467,095 + -1.6 467,095 + +0.5 467,095 + -1.4 467,096 - -1.1 467,096 - -0.7 467,244 + -0.4 467,282 - -0.4 467,282 - -2.4 467,286 + -0.5 467,289 + -0.2 467,562 + -0.5 467,596 + +0.1 467,596 + +1.0 467,596 + -0.8 467,596 + +0.2 467,617 - -0.5 467,617 - -0.1 467,650 + +0.2 467,651 - +0.4 467,670 - +0.0 467,716 + +0.2 467,716 + -2.3 467,759 + +0.6 467,759 + -0.8 467,759 + -0.8 467,759 + +1.3 467,759 + -1.2 467,759 + -2.3 467,759 + -0.5 467,759 + -0.6 467,759 + -0.7 467,759 + -1.6 467,759 + -1.6 467,759 + -1.2 467,760 - +0.4 467,760 - +0.2 467,760 - -1.1 467,760 - -0.0 467,760 - -1.4 467,760 - -0.5 467,760 - -0.1 467,760 - -0.1 467,760 - -2.2 467,760 - -1.2 467,760 - -1.4 467,768 + +0.4 467,768 + +0.5 467,787 + +0.5 467,787 + -0.7 467,787 + -0.6 467,787 + -0.2 467,787 + -0.8 467,787 + -0.2 467,787 + +0.7 467,787 + -1.1 467,787 + +0.7 467,788 - +0.4 467,788 - +0.8 467,788 - +1.0 467,788 - -1.6 467,788 - +0.8 467,788 - +0.5 467,788 - -0.8 467,788 - +0.2 467,788 - +0.4 467,788 - +0.8 467,798 + +0.5 467,798 + -0.8 467,799 - -1.2 467,799 - -0.5 467,799 - +1.1 467,840 + -1.0 467,873 + MPMX19_04154 0.13 -1.9 467,873 + MPMX19_04154 0.13 +0.7 467,873 + MPMX19_04154 0.13 -0.3 467,874 - MPMX19_04154 0.14 -0.9 467,874 - MPMX19_04154 0.14 +0.6 467,874 - MPMX19_04154 0.14 +0.2 467,874 - MPMX19_04154 0.14 +0.6 468,143 + MPMX19_04154 0.46 +0.6 468,143 + MPMX19_04154 0.46 +1.8 468,143 + MPMX19_04154 0.46 -0.6 468,143 + MPMX19_04154 0.46 -0.8 468,143 + MPMX19_04154 0.46 -1.9 468,144 - MPMX19_04154 0.47 +0.4 468,150 + MPMX19_04154 0.47 -1.4 468,150 + MPMX19_04154 0.47 +0.2 468,150 + MPMX19_04154 0.47 +0.2 468,151 - MPMX19_04154 0.47 +1.1 469,554 + MPMX19_04155 0.36 +0.2 469,554 + MPMX19_04155 0.36 +0.4 469,554 + MPMX19_04155 0.36 +0.6 469,555 - MPMX19_04155 0.36 +0.0 469,555 - MPMX19_04155 0.36 +0.8 469,555 - MPMX19_04155 0.36 +0.7 469,555 - MPMX19_04155 0.36 -1.3 469,555 - MPMX19_04155 0.36 +0.8 469,555 - MPMX19_04155 0.36 +0.2 469,555 - MPMX19_04155 0.36 +0.5
Or see this region's nucleotide sequence