Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04137

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04136 and MPMX19_04137 are separated by 67 nucleotidesMPMX19_04137 and MPMX19_04138 are separated by 118 nucleotidesMPMX19_04138 and MPMX19_04139 are separated by 95 nucleotides MPMX19_04136: MPMX19_04136 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 448,090 to 449,142 _04136 MPMX19_04137: MPMX19_04137 - HTH-type transcriptional regulator PgrR, at 449,210 to 450,094 _04137 MPMX19_04138: MPMX19_04138 - hypothetical protein, at 450,213 to 450,674 _04138 MPMX19_04139: MPMX19_04139 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 450,770 to 451,420 _04139 Position (kb) 449 450 451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 448.357 kb on + strand, within MPMX19_04136at 448.357 kb on + strand, within MPMX19_04136at 448.357 kb on + strand, within MPMX19_04136at 448.357 kb on + strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.399 kb on + strand, within MPMX19_04136at 448.399 kb on + strand, within MPMX19_04136at 448.399 kb on + strand, within MPMX19_04136at 448.400 kb on - strand, within MPMX19_04136at 448.400 kb on - strand, within MPMX19_04136at 448.555 kb on + strand, within MPMX19_04136at 448.555 kb on + strand, within MPMX19_04136at 448.555 kb on + strand, within MPMX19_04136at 448.740 kb on + strand, within MPMX19_04136at 448.741 kb on - strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 449.017 kb on + strand, within MPMX19_04136at 449.017 kb on + strand, within MPMX19_04136at 449.018 kb on - strand, within MPMX19_04136at 449.018 kb on - strand, within MPMX19_04136at 449.018 kb on - strand, within MPMX19_04136at 449.271 kb on + strandat 449.271 kb on + strandat 449.271 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.505 kb on + strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.812 kb on + strand, within MPMX19_04137at 450.095 kb on + strandat 450.321 kb on + strand, within MPMX19_04138at 450.321 kb on + strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.364 kb on - strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.385 kb on - strand, within MPMX19_04138at 450.414 kb on + strand, within MPMX19_04138at 450.414 kb on + strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.465 kb on + strand, within MPMX19_04138at 450.493 kb on - strand, within MPMX19_04138at 450.502 kb on - strand, within MPMX19_04138

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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448,357 + MPMX19_04136 0.25 +0.8
448,357 + MPMX19_04136 0.25 -1.6
448,357 + MPMX19_04136 0.25 -1.9
448,357 + MPMX19_04136 0.25 -0.1
448,358 - MPMX19_04136 0.25 -0.8
448,358 - MPMX19_04136 0.25 -0.6
448,358 - MPMX19_04136 0.25 -1.2
448,358 - MPMX19_04136 0.25 -0.4
448,358 - MPMX19_04136 0.25 -0.2
448,358 - MPMX19_04136 0.25 +0.2
448,399 + MPMX19_04136 0.29 +0.8
448,399 + MPMX19_04136 0.29 +0.9
448,399 + MPMX19_04136 0.29 +0.8
448,400 - MPMX19_04136 0.29 +1.2
448,400 - MPMX19_04136 0.29 +0.1
448,555 + MPMX19_04136 0.44 -1.8
448,555 + MPMX19_04136 0.44 -1.4
448,555 + MPMX19_04136 0.44 -0.7
448,740 + MPMX19_04136 0.62 -1.4
448,741 - MPMX19_04136 0.62 -1.5
448,771 + MPMX19_04136 0.65 -0.8
448,771 + MPMX19_04136 0.65 -0.3
448,771 + MPMX19_04136 0.65 -1.1
448,771 + MPMX19_04136 0.65 -0.4
448,772 - MPMX19_04136 0.65 -0.5
448,772 - MPMX19_04136 0.65 +0.2
448,772 - MPMX19_04136 0.65 -0.8
448,772 - MPMX19_04136 0.65 +1.6
448,772 - MPMX19_04136 0.65 +0.2
448,772 - MPMX19_04136 0.65 -0.2
448,772 - MPMX19_04136 0.65 -0.6
448,772 - MPMX19_04136 0.65 +0.8
448,772 - MPMX19_04136 0.65 -0.2
448,772 - MPMX19_04136 0.65 +1.2
449,017 + MPMX19_04136 0.88 -0.8
449,017 + MPMX19_04136 0.88 -0.0
449,018 - MPMX19_04136 0.88 -0.8
449,018 - MPMX19_04136 0.88 +0.1
449,018 - MPMX19_04136 0.88 +2.4
449,271 + +0.8
449,271 + +0.1
449,271 + +0.6
449,274 + -1.1
449,274 + -1.2
449,274 + -0.8
449,274 + -1.4
449,274 + -0.5
449,274 + -0.5
449,274 + -0.4
449,274 + +0.8
449,274 + -2.2
449,274 + -1.2
449,274 + +1.8
449,274 + +0.1
449,274 + +0.8
449,274 + -1.6
449,275 - -0.1
449,275 - -0.5
449,275 - +0.8
449,275 - -0.9
449,275 - +0.4
449,275 - -1.9
449,275 - +1.6
449,275 - +1.0
449,275 - -1.6
449,275 - -1.6
449,275 - -1.8
449,275 - -0.6
449,275 - +0.8
449,275 - -0.6
449,275 - -1.9
449,275 - +0.9
449,280 + -0.3
449,280 + -0.6
449,280 + -1.0
449,280 + -0.8
449,280 + -0.9
449,281 - +0.5
449,281 - +2.4
449,281 - -0.1
449,281 - +0.7
449,281 - +0.2
449,370 + MPMX19_04137 0.18 +0.8
449,370 + MPMX19_04137 0.18 -0.7
449,370 + MPMX19_04137 0.18 +0.2
449,370 + MPMX19_04137 0.18 -1.4
449,370 + MPMX19_04137 0.18 +1.2
449,370 + MPMX19_04137 0.18 -1.4
449,370 + MPMX19_04137 0.18 +0.4
449,370 + MPMX19_04137 0.18 -0.2
449,370 + MPMX19_04137 0.18 -0.7
449,370 + MPMX19_04137 0.18 +0.8
449,370 + MPMX19_04137 0.18 -1.8
449,370 + MPMX19_04137 0.18 -1.5
449,370 + MPMX19_04137 0.18 -0.5
449,370 + MPMX19_04137 0.18 +0.2
449,370 + MPMX19_04137 0.18 +0.5
449,370 + MPMX19_04137 0.18 -0.2
449,370 + MPMX19_04137 0.18 -1.6
449,370 + MPMX19_04137 0.18 -0.1
449,371 - MPMX19_04137 0.18 +0.8
449,371 - MPMX19_04137 0.18 +0.1
449,371 - MPMX19_04137 0.18 +0.6
449,371 - MPMX19_04137 0.18 +0.2
449,371 - MPMX19_04137 0.18 -0.7
449,371 - MPMX19_04137 0.18 -0.5
449,371 - MPMX19_04137 0.18 +0.7
449,371 - MPMX19_04137 0.18 -1.0
449,371 - MPMX19_04137 0.18 -0.2
449,371 - MPMX19_04137 0.18 -1.6
449,371 - MPMX19_04137 0.18 +1.0
449,371 - MPMX19_04137 0.18 -0.7
449,487 + MPMX19_04137 0.31 -0.8
449,487 + MPMX19_04137 0.31 -1.6
449,487 + MPMX19_04137 0.31 +0.1
449,487 + MPMX19_04137 0.31 -1.0
449,487 + MPMX19_04137 0.31 -0.5
449,488 - MPMX19_04137 0.31 +0.2
449,488 - MPMX19_04137 0.31 -1.5
449,488 - MPMX19_04137 0.31 +1.0
449,488 - MPMX19_04137 0.31 -0.5
449,488 - MPMX19_04137 0.31 -1.2
449,488 - MPMX19_04137 0.31 -0.5
449,505 + MPMX19_04137 0.33 -0.8
449,506 - MPMX19_04137 0.33 +2.3
449,506 - MPMX19_04137 0.33 -0.4
449,506 - MPMX19_04137 0.33 -1.4
449,812 + MPMX19_04137 0.68 +2.8
450,095 + -0.1
450,321 + MPMX19_04138 0.23 -0.3
450,321 + MPMX19_04138 0.23 +0.2
450,322 - MPMX19_04138 0.24 -0.2
450,322 - MPMX19_04138 0.24 +1.2
450,322 - MPMX19_04138 0.24 +0.1
450,322 - MPMX19_04138 0.24 -1.2
450,322 - MPMX19_04138 0.24 -0.5
450,322 - MPMX19_04138 0.24 +0.1
450,322 - MPMX19_04138 0.24 -0.8
450,322 - MPMX19_04138 0.24 +0.0
450,322 - MPMX19_04138 0.24 +0.4
450,322 - MPMX19_04138 0.24 -1.4
450,363 + MPMX19_04138 0.32 -0.6
450,363 + MPMX19_04138 0.32 -0.6
450,363 + MPMX19_04138 0.32 -0.9
450,363 + MPMX19_04138 0.32 -0.1
450,363 + MPMX19_04138 0.32 +0.4
450,364 - MPMX19_04138 0.33 +0.0
450,384 + MPMX19_04138 0.37 -0.6
450,384 + MPMX19_04138 0.37 -1.8
450,384 + MPMX19_04138 0.37 -0.9
450,384 + MPMX19_04138 0.37 -0.6
450,384 + MPMX19_04138 0.37 +0.8
450,384 + MPMX19_04138 0.37 -1.6
450,384 + MPMX19_04138 0.37 -0.4
450,384 + MPMX19_04138 0.37 -0.2
450,384 + MPMX19_04138 0.37 +1.8
450,385 - MPMX19_04138 0.37 -0.5
450,414 + MPMX19_04138 0.44 +0.2
450,414 + MPMX19_04138 0.44 -0.4
450,415 - MPMX19_04138 0.44 -0.1
450,415 - MPMX19_04138 0.44 -1.0
450,415 - MPMX19_04138 0.44 +1.2
450,415 - MPMX19_04138 0.44 +0.0
450,465 + MPMX19_04138 0.55 +0.4
450,493 - MPMX19_04138 0.61 -1.4
450,502 - MPMX19_04138 0.63 -1.2

Or see this region's nucleotide sequence