Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03754

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03752 and MPMX19_03753 are separated by 279 nucleotidesMPMX19_03753 and MPMX19_03754 are separated by 50 nucleotidesMPMX19_03754 and MPMX19_03755 are separated by 106 nucleotides MPMX19_03752: MPMX19_03752 - hypothetical protein, at 1,197,735 to 1,198,100 _03752 MPMX19_03753: MPMX19_03753 - hypothetical protein, at 1,198,380 to 1,198,865 _03753 MPMX19_03754: MPMX19_03754 - hypothetical protein, at 1,198,916 to 1,199,449 _03754 MPMX19_03755: MPMX19_03755 - Copper transport protein YcnJ, at 1,199,556 to 1,201,259 _03755 Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -2 -1 0 1 2at 1198.179 kb on + strandat 1198.871 kb on + strandat 1198.871 kb on + strandat 1198.871 kb on + strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.171 kb on + strand, within MPMX19_03754at 1199.172 kb on - strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.261 kb on + strand, within MPMX19_03754at 1199.262 kb on - strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.399 kb on + strandat 1199.529 kb on + strandat 1199.582 kb on + strandat 1199.583 kb on - strandat 1199.583 kb on - strandat 1199.583 kb on - strandat 1199.583 kb on - strandat 1199.781 kb on - strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.872 kb on - strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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1,198,179 + +0.0
1,198,871 + +0.1
1,198,871 + -0.1
1,198,871 + -0.1
1,198,872 - -1.0
1,198,872 - -0.5
1,198,872 - +1.1
1,198,872 - -0.4
1,198,872 - -0.9
1,198,872 - -0.8
1,198,872 - -0.6
1,199,030 + MPMX19_03754 0.21 +0.6
1,199,030 + MPMX19_03754 0.21 +1.8
1,199,030 + MPMX19_03754 0.21 +0.8
1,199,030 + MPMX19_03754 0.21 -0.1
1,199,030 + MPMX19_03754 0.21 +0.2
1,199,030 + MPMX19_03754 0.21 +1.0
1,199,031 - MPMX19_03754 0.22 -2.0
1,199,031 - MPMX19_03754 0.22 -1.8
1,199,031 - MPMX19_03754 0.22 -1.1
1,199,031 - MPMX19_03754 0.22 +0.3
1,199,031 - MPMX19_03754 0.22 -0.4
1,199,031 - MPMX19_03754 0.22 +0.4
1,199,031 - MPMX19_03754 0.22 -1.1
1,199,031 - MPMX19_03754 0.22 -0.6
1,199,031 - MPMX19_03754 0.22 -0.7
1,199,033 + MPMX19_03754 0.22 +0.1
1,199,033 + MPMX19_03754 0.22 +0.1
1,199,033 + MPMX19_03754 0.22 -1.0
1,199,033 + MPMX19_03754 0.22 -0.5
1,199,033 + MPMX19_03754 0.22 -2.2
1,199,033 + MPMX19_03754 0.22 +0.2
1,199,033 + MPMX19_03754 0.22 -1.9
1,199,033 + MPMX19_03754 0.22 +1.2
1,199,033 + MPMX19_03754 0.22 -0.3
1,199,033 + MPMX19_03754 0.22 -0.9
1,199,033 + MPMX19_03754 0.22 -2.3
1,199,033 + MPMX19_03754 0.22 -1.0
1,199,034 - MPMX19_03754 0.22 -0.1
1,199,034 - MPMX19_03754 0.22 +0.5
1,199,034 - MPMX19_03754 0.22 -1.8
1,199,034 - MPMX19_03754 0.22 -0.3
1,199,034 - MPMX19_03754 0.22 -0.3
1,199,034 - MPMX19_03754 0.22 +1.0
1,199,034 - MPMX19_03754 0.22 +0.8
1,199,034 - MPMX19_03754 0.22 -1.0
1,199,034 - MPMX19_03754 0.22 +0.9
1,199,034 - MPMX19_03754 0.22 -0.7
1,199,034 - MPMX19_03754 0.22 +0.4
1,199,171 + MPMX19_03754 0.48 +0.8
1,199,172 - MPMX19_03754 0.48 +1.8
1,199,183 + MPMX19_03754 0.50 -0.5
1,199,183 + MPMX19_03754 0.50 -0.7
1,199,183 + MPMX19_03754 0.50 -0.1
1,199,183 + MPMX19_03754 0.50 -0.1
1,199,183 + MPMX19_03754 0.50 -0.3
1,199,183 + MPMX19_03754 0.50 -0.2
1,199,183 + MPMX19_03754 0.50 +0.8
1,199,183 + MPMX19_03754 0.50 +0.6
1,199,183 + MPMX19_03754 0.50 -1.2
1,199,183 + MPMX19_03754 0.50 -1.2
1,199,183 + MPMX19_03754 0.50 -0.1
1,199,184 - MPMX19_03754 0.50 +1.0
1,199,184 - MPMX19_03754 0.50 -0.2
1,199,184 - MPMX19_03754 0.50 +2.5
1,199,184 - MPMX19_03754 0.50 -0.7
1,199,184 - MPMX19_03754 0.50 -1.2
1,199,184 - MPMX19_03754 0.50 -0.8
1,199,184 - MPMX19_03754 0.50 +0.6
1,199,261 + MPMX19_03754 0.65 +1.6
1,199,262 - MPMX19_03754 0.65 -1.9
1,199,318 + MPMX19_03754 0.75 -0.8
1,199,318 + MPMX19_03754 0.75 -0.6
1,199,318 + MPMX19_03754 0.75 -1.5
1,199,318 + MPMX19_03754 0.75 -0.7
1,199,318 + MPMX19_03754 0.75 -0.5
1,199,318 + MPMX19_03754 0.75 +0.5
1,199,318 + MPMX19_03754 0.75 -0.9
1,199,318 + MPMX19_03754 0.75 -0.1
1,199,318 + MPMX19_03754 0.75 -2.0
1,199,318 + MPMX19_03754 0.75 -0.8
1,199,318 + MPMX19_03754 0.75 -0.7
1,199,318 + MPMX19_03754 0.75 -1.5
1,199,318 + MPMX19_03754 0.75 -0.5
1,199,318 + MPMX19_03754 0.75 -0.1
1,199,319 - MPMX19_03754 0.75 -2.1
1,199,319 - MPMX19_03754 0.75 -2.3
1,199,319 - MPMX19_03754 0.75 -1.2
1,199,319 - MPMX19_03754 0.75 -0.2
1,199,319 - MPMX19_03754 0.75 +0.8
1,199,319 - MPMX19_03754 0.75 +1.0
1,199,319 - MPMX19_03754 0.75 +0.5
1,199,319 - MPMX19_03754 0.75 -2.1
1,199,319 - MPMX19_03754 0.75 -0.1
1,199,319 - MPMX19_03754 0.75 -0.8
1,199,319 - MPMX19_03754 0.75 -0.2
1,199,319 - MPMX19_03754 0.75 -0.7
1,199,399 + -1.5
1,199,529 + -0.7
1,199,582 + +1.1
1,199,583 - +0.1
1,199,583 - +0.7
1,199,583 - -0.8
1,199,583 - +0.7
1,199,781 - MPMX19_03755 0.13 -0.8
1,199,859 + MPMX19_03755 0.18 -1.2
1,199,859 + MPMX19_03755 0.18 +1.5
1,199,859 + MPMX19_03755 0.18 -1.0
1,199,859 + MPMX19_03755 0.18 -0.7
1,199,859 + MPMX19_03755 0.18 +0.2
1,199,859 + MPMX19_03755 0.18 +1.4
1,199,859 + MPMX19_03755 0.18 -1.4
1,199,859 + MPMX19_03755 0.18 -1.4
1,199,859 + MPMX19_03755 0.18 +1.1
1,199,859 + MPMX19_03755 0.18 -0.2
1,199,859 + MPMX19_03755 0.18 +0.4
1,199,859 + MPMX19_03755 0.18 -2.7
1,199,859 + MPMX19_03755 0.18 -0.5
1,199,859 + MPMX19_03755 0.18 -0.2
1,199,859 + MPMX19_03755 0.18 +1.6
1,199,859 + MPMX19_03755 0.18 +0.1
1,199,859 + MPMX19_03755 0.18 +1.0
1,199,859 + MPMX19_03755 0.18 -0.2
1,199,860 - MPMX19_03755 0.18 -0.6
1,199,860 - MPMX19_03755 0.18 -0.0
1,199,860 - MPMX19_03755 0.18 -0.0
1,199,860 - MPMX19_03755 0.18 +0.3
1,199,860 - MPMX19_03755 0.18 -0.9
1,199,860 - MPMX19_03755 0.18 +0.4
1,199,860 - MPMX19_03755 0.18 -0.7
1,199,860 - MPMX19_03755 0.18 +0.1
1,199,860 - MPMX19_03755 0.18 -1.2
1,199,860 - MPMX19_03755 0.18 -1.3
1,199,860 - MPMX19_03755 0.18 -1.0
1,199,860 - MPMX19_03755 0.18 +0.5
1,199,860 - MPMX19_03755 0.18 -0.2
1,199,860 - MPMX19_03755 0.18 -0.5
1,199,860 - MPMX19_03755 0.18 +0.8
1,199,860 - MPMX19_03755 0.18 -0.7
1,199,860 - MPMX19_03755 0.18 +0.2
1,199,872 - MPMX19_03755 0.19 -1.8
1,200,021 + MPMX19_03755 0.27 +0.1
1,200,021 + MPMX19_03755 0.27 +0.5
1,200,021 + MPMX19_03755 0.27 -1.0
1,200,021 + MPMX19_03755 0.27 -1.0
1,200,021 + MPMX19_03755 0.27 +0.1
1,200,022 - MPMX19_03755 0.27 -0.2
1,200,022 - MPMX19_03755 0.27 -0.2
1,200,022 - MPMX19_03755 0.27 +0.1
1,200,022 - MPMX19_03755 0.27 -1.4
1,200,022 - MPMX19_03755 0.27 -0.2
1,200,022 - MPMX19_03755 0.27 -1.2

Or see this region's nucleotide sequence