Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03522 and MPMX19_03523 are separated by 96 nucleotides MPMX19_03523 and MPMX19_03524 are separated by 355 nucleotides MPMX19_03524 and MPMX19_03525 are separated by 40 nucleotides MPMX19_03525 and MPMX19_03526 overlap by 4 nucleotides
MPMX19_03522: MPMX19_03522 - Flavohemoprotein, at 940,368 to 942,467
_03522
MPMX19_03523: MPMX19_03523 - hypothetical protein, at 942,564 to 943,028
_03523
MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315
_03524
MPMX19_03525: MPMX19_03525 - 3-dehydroquinate dehydratase, at 945,356 to 945,805
_03525
MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704
_03526
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 942.534 kb on - strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.560 kb on - strand at 942.560 kb on - strand at 942.673 kb on - strand, within MPMX19_03523 at 942.673 kb on - strand, within MPMX19_03523 at 942.674 kb on + strand, within MPMX19_03523 at 942.674 kb on + strand, within MPMX19_03523 at 942.675 kb on - strand, within MPMX19_03523 at 942.675 kb on - strand, within MPMX19_03523 at 942.826 kb on - strand, within MPMX19_03523 at 942.826 kb on - strand, within MPMX19_03523 at 942.831 kb on + strand, within MPMX19_03523 at 942.831 kb on + strand, within MPMX19_03523 at 942.832 kb on - strand, within MPMX19_03523 at 942.832 kb on - strand, within MPMX19_03523 at 942.861 kb on + strand, within MPMX19_03523 at 942.862 kb on - strand, within MPMX19_03523 at 943.124 kb on - strand at 943.137 kb on + strand at 943.137 kb on + strand at 943.137 kb on + strand at 943.138 kb on - strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.199 kb on - strand at 943.215 kb on + strand at 943.243 kb on + strand at 943.244 kb on - strand at 943.354 kb on - strand at 943.354 kb on - strand at 943.354 kb on - strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.402 kb on - strand at 943.801 kb on + strand, within MPMX19_03524 at 943.802 kb on - strand, within MPMX19_03524 at 944.366 kb on - strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.774 kb on - strand, within MPMX19_03524 at 944.774 kb on - strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.058 kb on + strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.131 kb on - strand at 945.131 kb on - strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.167 kb on - strand at 945.304 kb on + strand at 945.304 kb on + strand at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.843 kb on + strand at 945.843 kb on + strand at 945.843 kb on + strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 942,534 - -1.1 942,559 + -1.6 942,559 + -1.7 942,559 + -1.2 942,559 + +0.1 942,559 + +0.5 942,559 + -1.0 942,560 - -0.7 942,560 - -0.8 942,673 - MPMX19_03523 0.23 +0.2 942,673 - MPMX19_03523 0.23 -0.2 942,674 + MPMX19_03523 0.24 +1.4 942,674 + MPMX19_03523 0.24 -0.0 942,675 - MPMX19_03523 0.24 -0.2 942,675 - MPMX19_03523 0.24 -0.6 942,826 - MPMX19_03523 0.56 +0.3 942,826 - MPMX19_03523 0.56 +0.3 942,831 + MPMX19_03523 0.57 -1.8 942,831 + MPMX19_03523 0.57 +0.0 942,832 - MPMX19_03523 0.58 -0.2 942,832 - MPMX19_03523 0.58 -1.6 942,861 + MPMX19_03523 0.64 -0.6 942,862 - MPMX19_03523 0.64 -0.2 943,124 - -1.0 943,137 + +0.2 943,137 + +1.8 943,137 + -0.6 943,138 - -2.8 943,163 + -0.2 943,163 + +0.8 943,163 + +0.8 943,163 + -1.5 943,163 + +0.5 943,164 - -1.6 943,164 - -0.3 943,164 - -0.7 943,164 - +0.3 943,199 - +0.9 943,215 + -1.6 943,243 + -1.0 943,244 - -0.6 943,354 - -1.4 943,354 - +0.3 943,354 - -0.7 943,401 + +0.0 943,401 + -1.2 943,402 - -1.5 943,801 + MPMX19_03524 0.22 -2.0 943,802 - MPMX19_03524 0.22 +1.5 944,366 - MPMX19_03524 0.51 -1.6 944,593 + MPMX19_03524 0.63 -0.6 944,593 + MPMX19_03524 0.63 -0.2 944,593 + MPMX19_03524 0.63 -0.8 944,593 + MPMX19_03524 0.63 -1.3 944,593 + MPMX19_03524 0.63 -0.1 944,593 + MPMX19_03524 0.63 +0.5 944,593 + MPMX19_03524 0.63 -0.5 944,593 + MPMX19_03524 0.63 -1.2 944,594 - MPMX19_03524 0.63 -1.1 944,594 - MPMX19_03524 0.63 +0.2 944,594 - MPMX19_03524 0.63 -0.8 944,594 - MPMX19_03524 0.63 -0.5 944,594 - MPMX19_03524 0.63 -1.8 944,773 + MPMX19_03524 0.72 +1.3 944,773 + MPMX19_03524 0.72 +0.2 944,773 + MPMX19_03524 0.72 +0.8 944,773 + MPMX19_03524 0.72 +1.4 944,774 - MPMX19_03524 0.72 -1.0 944,774 - MPMX19_03524 0.72 -1.2 945,055 + MPMX19_03524 0.86 -0.6 945,055 + MPMX19_03524 0.86 -0.8 945,055 + MPMX19_03524 0.86 +0.4 945,055 + MPMX19_03524 0.86 -0.7 945,055 + MPMX19_03524 0.86 +0.8 945,056 - MPMX19_03524 0.87 -1.7 945,056 - MPMX19_03524 0.87 -0.8 945,056 - MPMX19_03524 0.87 -1.3 945,056 - MPMX19_03524 0.87 +1.1 945,056 - MPMX19_03524 0.87 -1.0 945,056 - MPMX19_03524 0.87 -1.4 945,056 - MPMX19_03524 0.87 -2.5 945,056 - MPMX19_03524 0.87 -0.1 945,056 - MPMX19_03524 0.87 -0.2 945,058 + MPMX19_03524 0.87 +0.8 945,059 - MPMX19_03524 0.87 -1.6 945,059 - MPMX19_03524 0.87 -1.9 945,130 + +0.4 945,130 + -0.8 945,130 + -0.6 945,130 + -2.2 945,130 + +0.6 945,130 + -0.6 945,130 + -0.7 945,131 - -0.6 945,131 - -3.1 945,166 + +1.8 945,166 + +0.0 945,166 + -1.3 945,166 + +2.2 945,166 + +0.2 945,166 + +1.0 945,166 + +0.0 945,166 + +0.3 945,166 + +0.4 945,166 + +0.5 945,166 + +2.1 945,166 + -1.4 945,167 - +0.8 945,304 + -1.7 945,304 + -0.8 945,425 + MPMX19_03525 0.15 +0.2 945,425 + MPMX19_03525 0.15 -0.2 945,425 + MPMX19_03525 0.15 -0.8 945,425 + MPMX19_03525 0.15 +0.1 945,425 + MPMX19_03525 0.15 -2.2 945,425 + MPMX19_03525 0.15 -1.6 945,425 + MPMX19_03525 0.15 -1.2 945,425 + MPMX19_03525 0.15 -0.8 945,425 + MPMX19_03525 0.15 -1.6 945,425 + MPMX19_03525 0.15 +0.3 945,425 + MPMX19_03525 0.15 -1.0 945,425 + MPMX19_03525 0.15 -0.6 945,425 + MPMX19_03525 0.15 -0.3 945,425 + MPMX19_03525 0.15 +0.6 945,425 + MPMX19_03525 0.15 -0.9 945,425 + MPMX19_03525 0.15 +0.0 945,425 + MPMX19_03525 0.15 -0.9 945,425 + MPMX19_03525 0.15 -0.5 945,426 - MPMX19_03525 0.16 -0.6 945,426 - MPMX19_03525 0.16 -0.6 945,426 - MPMX19_03525 0.16 +0.2 945,426 - MPMX19_03525 0.16 +0.0 945,426 - MPMX19_03525 0.16 -1.2 945,426 - MPMX19_03525 0.16 -1.7 945,426 - MPMX19_03525 0.16 -0.1 945,426 - MPMX19_03525 0.16 -0.8 945,426 - MPMX19_03525 0.16 -0.6 945,426 - MPMX19_03525 0.16 -0.4 945,426 - MPMX19_03525 0.16 +0.9 945,426 - MPMX19_03525 0.16 +0.4 945,426 - MPMX19_03525 0.16 -0.8 945,702 - MPMX19_03525 0.77 -2.4 945,702 - MPMX19_03525 0.77 -0.2 945,752 + MPMX19_03525 0.88 +0.5 945,752 + MPMX19_03525 0.88 +0.1 945,752 + MPMX19_03525 0.88 -0.8 945,752 + MPMX19_03525 0.88 -0.9 945,752 + MPMX19_03525 0.88 -1.3 945,753 - MPMX19_03525 0.88 +0.2 945,753 - MPMX19_03525 0.88 -1.4 945,753 - MPMX19_03525 0.88 -0.1 945,753 - MPMX19_03525 0.88 -1.2 945,843 + -0.2 945,843 + -0.8 945,843 + -0.9 945,844 - -0.9 945,844 - -1.9 945,844 - -0.2 945,844 - +1.0 945,844 - +0.1 945,938 - MPMX19_03526 0.15 +0.4 945,938 - MPMX19_03526 0.15 +0.3 945,938 - MPMX19_03526 0.15 +0.8 946,018 + MPMX19_03526 0.24 +0.2 946,018 + MPMX19_03526 0.24 +0.7 946,018 + MPMX19_03526 0.24 -1.0 946,019 - MPMX19_03526 0.24 +0.2 946,019 - MPMX19_03526 0.24 -0.8 946,019 - MPMX19_03526 0.24 -0.7 946,039 + MPMX19_03526 0.26 -0.5 946,039 + MPMX19_03526 0.26 -1.2 946,039 + MPMX19_03526 0.26 +0.3 946,039 + MPMX19_03526 0.26 -1.4 946,040 - MPMX19_03526 0.26 -0.4 946,040 - MPMX19_03526 0.26 -1.3 946,040 - MPMX19_03526 0.26 -0.9
Or see this region's nucleotide sequence