Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03007 and MPMX19_03008 are separated by 88 nucleotides MPMX19_03008 and MPMX19_03009 are separated by 148 nucleotides
MPMX19_03007: MPMX19_03007 - Arabinose import ATP-binding protein AraG, at 269,665 to 271,203
_03007
MPMX19_03008: MPMX19_03008 - hypothetical protein, at 271,292 to 272,239
_03008
MPMX19_03009: MPMX19_03009 - Erythritol catabolism regulatory protein EryD, at 272,388 to 273,374
_03009
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.707 kb on + strand, within MPMX19_03008 at 271.708 kb on - strand, within MPMX19_03008 at 271.708 kb on - strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.881 kb on + strand, within MPMX19_03008 at 271.882 kb on - strand, within MPMX19_03008 at 272.264 kb on + strand at 272.264 kb on + strand at 272.265 kb on - strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.370 kb on - strand at 272.370 kb on - strand at 272.370 kb on - strand at 272.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 271,626 + MPMX19_03008 0.35 +2.4 271,626 + MPMX19_03008 0.35 +0.9 271,626 + MPMX19_03008 0.35 -1.7 271,626 + MPMX19_03008 0.35 -1.4 271,626 + MPMX19_03008 0.35 +0.4 271,626 + MPMX19_03008 0.35 +0.2 271,626 + MPMX19_03008 0.35 -0.0 271,627 - MPMX19_03008 0.35 +0.2 271,627 - MPMX19_03008 0.35 -1.2 271,627 - MPMX19_03008 0.35 +0.0 271,627 - MPMX19_03008 0.35 +0.7 271,627 - MPMX19_03008 0.35 -1.0 271,668 + MPMX19_03008 0.40 -1.4 271,668 + MPMX19_03008 0.40 -0.2 271,668 + MPMX19_03008 0.40 -0.3 271,668 + MPMX19_03008 0.40 +0.4 271,668 + MPMX19_03008 0.40 +0.4 271,668 + MPMX19_03008 0.40 +2.5 271,668 + MPMX19_03008 0.40 +0.5 271,668 + MPMX19_03008 0.40 -0.2 271,668 + MPMX19_03008 0.40 -1.5 271,669 - MPMX19_03008 0.40 -0.9 271,669 - MPMX19_03008 0.40 -0.9 271,669 - MPMX19_03008 0.40 -0.7 271,669 - MPMX19_03008 0.40 -1.9 271,669 - MPMX19_03008 0.40 -1.5 271,669 - MPMX19_03008 0.40 -1.5 271,707 + MPMX19_03008 0.44 -0.2 271,708 - MPMX19_03008 0.44 -1.0 271,708 - MPMX19_03008 0.44 +0.0 271,815 + MPMX19_03008 0.55 -1.6 271,815 + MPMX19_03008 0.55 +1.2 271,815 + MPMX19_03008 0.55 +1.8 271,815 + MPMX19_03008 0.55 -2.2 271,816 - MPMX19_03008 0.55 -1.3 271,816 - MPMX19_03008 0.55 +0.2 271,816 - MPMX19_03008 0.55 -0.7 271,816 - MPMX19_03008 0.55 -0.0 271,816 - MPMX19_03008 0.55 +0.3 271,881 + MPMX19_03008 0.62 -0.9 271,882 - MPMX19_03008 0.62 +0.6 272,264 + -0.4 272,264 + -0.1 272,265 - -0.6 272,369 + -1.1 272,369 + +0.5 272,369 + +0.3 272,370 - +1.0 272,370 - -0.6 272,370 - -1.0 272,370 - -0.6
Or see this region's nucleotide sequence