Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03005

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03004 and MPMX19_03005 are separated by 11 nucleotidesMPMX19_03005 and MPMX19_03006 are separated by 14 nucleotides MPMX19_03004: MPMX19_03004 - 2-oxoisovalerate dehydrogenase subunit beta, at 266,584 to 267,579 _03004 MPMX19_03005: MPMX19_03005 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 267,591 to 268,664 _03005 MPMX19_03006: MPMX19_03006 - Ribose import permease protein RbsC, at 268,679 to 269,668 _03006 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 266.930 kb on + strand, within MPMX19_03004at 266.930 kb on + strand, within MPMX19_03004at 266.930 kb on + strand, within MPMX19_03004at 266.931 kb on - strand, within MPMX19_03004at 266.948 kb on + strand, within MPMX19_03004at 266.949 kb on - strand, within MPMX19_03004at 267.044 kb on + strand, within MPMX19_03004at 267.045 kb on - strand, within MPMX19_03004at 267.045 kb on - strand, within MPMX19_03004at 267.110 kb on + strand, within MPMX19_03004at 267.110 kb on + strand, within MPMX19_03004at 267.111 kb on - strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.462 kb on - strand, within MPMX19_03004at 267.474 kb on - strand, within MPMX19_03004at 267.557 kb on + strandat 267.558 kb on - strandat 267.658 kb on + strandat 267.889 kb on + strand, within MPMX19_03005at 267.889 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.333 kb on + strand, within MPMX19_03005at 268.576 kb on + strandat 268.576 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.661 kb on - strandat 268.661 kb on - strandat 268.661 kb on - strandat 268.661 kb on - strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.067 kb on + strand, within MPMX19_03006at 269.067 kb on + strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.200 kb on - strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.592 kb on + strandat 269.592 kb on + strandat 269.592 kb on + strandat 269.593 kb on - strandat 269.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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266,930 + MPMX19_03004 0.35 -1.9
266,930 + MPMX19_03004 0.35 +0.2
266,930 + MPMX19_03004 0.35 -2.6
266,931 - MPMX19_03004 0.35 -2.1
266,948 + MPMX19_03004 0.37 -1.7
266,949 - MPMX19_03004 0.37 +0.5
267,044 + MPMX19_03004 0.46 -1.4
267,045 - MPMX19_03004 0.46 -1.2
267,045 - MPMX19_03004 0.46 -0.4
267,110 + MPMX19_03004 0.53 -1.6
267,110 + MPMX19_03004 0.53 +1.2
267,111 - MPMX19_03004 0.53 -0.4
267,167 + MPMX19_03004 0.59 -0.4
267,167 + MPMX19_03004 0.59 +0.9
267,167 + MPMX19_03004 0.59 -0.8
267,167 + MPMX19_03004 0.59 +1.8
267,168 - MPMX19_03004 0.59 -0.7
267,168 - MPMX19_03004 0.59 -0.2
267,168 - MPMX19_03004 0.59 -1.6
267,266 + MPMX19_03004 0.68 +0.5
267,266 + MPMX19_03004 0.68 -0.1
267,266 + MPMX19_03004 0.68 -1.3
267,326 + MPMX19_03004 0.74 +0.2
267,326 + MPMX19_03004 0.74 -1.5
267,326 + MPMX19_03004 0.74 +0.2
267,326 + MPMX19_03004 0.74 -0.4
267,326 + MPMX19_03004 0.74 +1.2
267,326 + MPMX19_03004 0.74 -0.2
267,326 + MPMX19_03004 0.74 -0.2
267,326 + MPMX19_03004 0.74 -1.1
267,326 + MPMX19_03004 0.74 +0.2
267,326 + MPMX19_03004 0.74 +0.3
267,326 + MPMX19_03004 0.74 -1.0
267,326 + MPMX19_03004 0.74 -0.6
267,326 + MPMX19_03004 0.74 -1.4
267,326 + MPMX19_03004 0.74 +1.2
267,326 + MPMX19_03004 0.74 +0.2
267,326 + MPMX19_03004 0.74 +0.8
267,326 + MPMX19_03004 0.74 -0.6
267,326 + MPMX19_03004 0.74 -1.7
267,326 + MPMX19_03004 0.74 +1.9
267,327 - MPMX19_03004 0.75 +0.8
267,327 - MPMX19_03004 0.75 -1.8
267,327 - MPMX19_03004 0.75 -0.7
267,461 + MPMX19_03004 0.88 -0.4
267,461 + MPMX19_03004 0.88 -0.1
267,461 + MPMX19_03004 0.88 -0.3
267,462 - MPMX19_03004 0.88 -0.7
267,474 - MPMX19_03004 0.89 +1.3
267,557 + -1.4
267,558 - +0.7
267,658 + +0.6
267,889 + MPMX19_03005 0.28 -1.7
267,889 + MPMX19_03005 0.28 +0.5
268,147 + MPMX19_03005 0.52 -0.2
268,147 + MPMX19_03005 0.52 +0.6
268,147 + MPMX19_03005 0.52 -1.4
268,147 + MPMX19_03005 0.52 -0.8
268,333 + MPMX19_03005 0.69 -1.8
268,576 + +0.6
268,576 + -0.9
268,660 + +0.8
268,660 + +0.6
268,660 + -0.2
268,660 + -0.6
268,660 + -0.2
268,660 + -0.6
268,661 - -0.4
268,661 - -0.1
268,661 - -0.4
268,661 - -1.1
268,761 + -0.5
268,761 + -1.4
268,761 + -0.4
268,761 + -0.1
268,761 + -0.2
268,761 + -1.6
268,761 + +0.1
268,761 + +0.2
268,762 - -0.2
268,762 - -1.0
268,762 - -0.9
268,762 - -0.3
268,762 - -1.5
268,762 - -1.1
268,762 - -0.4
268,762 - +0.4
268,762 - +1.2
268,762 - +0.3
269,004 + MPMX19_03006 0.33 +0.2
269,004 + MPMX19_03006 0.33 -0.9
269,004 + MPMX19_03006 0.33 +0.9
269,004 + MPMX19_03006 0.33 +0.3
269,004 + MPMX19_03006 0.33 -1.2
269,004 + MPMX19_03006 0.33 -1.0
269,004 + MPMX19_03006 0.33 -0.2
269,005 - MPMX19_03006 0.33 -0.4
269,005 - MPMX19_03006 0.33 +0.4
269,005 - MPMX19_03006 0.33 +0.8
269,061 + MPMX19_03006 0.39 -1.2
269,061 + MPMX19_03006 0.39 -0.8
269,061 + MPMX19_03006 0.39 +0.2
269,062 - MPMX19_03006 0.39 +1.0
269,062 - MPMX19_03006 0.39 -0.9
269,062 - MPMX19_03006 0.39 +1.8
269,062 - MPMX19_03006 0.39 -0.7
269,067 + MPMX19_03006 0.39 +0.2
269,067 + MPMX19_03006 0.39 -0.1
269,068 - MPMX19_03006 0.39 -0.2
269,068 - MPMX19_03006 0.39 +1.3
269,068 - MPMX19_03006 0.39 -0.5
269,178 + MPMX19_03006 0.50 -1.8
269,178 + MPMX19_03006 0.50 -1.1
269,178 + MPMX19_03006 0.50 -1.2
269,178 + MPMX19_03006 0.50 -0.1
269,178 + MPMX19_03006 0.50 +0.2
269,178 + MPMX19_03006 0.50 +0.5
269,178 + MPMX19_03006 0.50 -1.7
269,179 - MPMX19_03006 0.51 +0.5
269,179 - MPMX19_03006 0.51 +0.4
269,179 - MPMX19_03006 0.51 -1.0
269,179 - MPMX19_03006 0.51 -1.3
269,179 - MPMX19_03006 0.51 -1.5
269,179 - MPMX19_03006 0.51 -0.6
269,179 - MPMX19_03006 0.51 -0.6
269,179 - MPMX19_03006 0.51 -1.7
269,179 - MPMX19_03006 0.51 -0.5
269,179 - MPMX19_03006 0.51 -0.9
269,199 + MPMX19_03006 0.53 -0.9
269,199 + MPMX19_03006 0.53 -1.1
269,199 + MPMX19_03006 0.53 +0.7
269,199 + MPMX19_03006 0.53 -0.2
269,199 + MPMX19_03006 0.53 -0.7
269,200 - MPMX19_03006 0.53 -0.1
269,418 + MPMX19_03006 0.75 -0.8
269,418 + MPMX19_03006 0.75 -1.4
269,418 + MPMX19_03006 0.75 -0.0
269,592 + +1.2
269,592 + +0.8
269,592 + +0.8
269,593 - -1.2
269,593 - +0.5

Or see this region's nucleotide sequence