Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02815 and MPMX19_02816 are separated by 14 nucleotides MPMX19_02816 and MPMX19_02817 are separated by 83 nucleotides MPMX19_02817 and MPMX19_02818 are separated by 141 nucleotides
MPMX19_02815: MPMX19_02815 - 2-keto-4-pentenoate hydratase, at 52,028 to 52,792
_02815
MPMX19_02816: MPMX19_02816 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 52,807 to 53,493
_02816
MPMX19_02817: MPMX19_02817 - Serine 3-dehydrogenase, at 53,577 to 54,365
_02817
MPMX19_02818: MPMX19_02818 - hypothetical protein, at 54,507 to 55,979
_02818
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 53.218 kb on + strand, within MPMX19_02816 at 53.218 kb on + strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.491 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 54.052 kb on - strand, within MPMX19_02817 at 54.052 kb on - strand, within MPMX19_02817 at 54.211 kb on - strand, within MPMX19_02817 at 54.211 kb on - strand, within MPMX19_02817 at 54.437 kb on + strand at 54.438 kb on - strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.638 kb on + strand at 54.638 kb on + strand at 54.639 kb on - strand at 54.639 kb on - strand at 54.639 kb on - strand at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 53,218 + MPMX19_02816 0.60 -0.3 53,218 + MPMX19_02816 0.60 +0.7 53,219 - MPMX19_02816 0.60 -0.2 53,219 - MPMX19_02816 0.60 -1.4 53,219 - MPMX19_02816 0.60 -1.4 53,219 - MPMX19_02816 0.60 -0.5 53,491 + -0.8 53,534 + -0.9 53,534 + +0.3 53,534 + +0.0 53,534 + -1.3 53,534 + +0.0 53,534 + -0.6 53,535 - -0.0 53,535 - -1.1 53,535 - -0.2 53,535 - +0.9 53,535 - -1.1 53,535 - +0.5 53,535 - -0.2 53,536 + -1.2 53,536 + -0.9 53,536 + +1.4 53,536 + -0.8 53,536 + -0.8 53,536 + -0.6 53,537 - +0.0 53,537 - +0.8 53,537 - -1.0 53,537 - -0.2 53,537 - +0.4 53,537 - +0.2 53,537 - -1.6 54,052 - MPMX19_02817 0.60 -1.3 54,052 - MPMX19_02817 0.60 -1.9 54,211 - MPMX19_02817 0.80 -0.8 54,211 - MPMX19_02817 0.80 -0.6 54,437 + +0.2 54,438 - -0.4 54,524 + -1.2 54,524 + -0.8 54,524 + -0.0 54,524 + -1.6 54,524 + +0.1 54,524 + +0.2 54,524 + +2.8 54,524 + -1.0 54,524 + -1.6 54,524 + +0.2 54,524 + -0.6 54,524 + -1.8 54,525 - +0.8 54,525 - +0.8 54,525 - +0.4 54,525 - +0.6 54,525 - -1.2 54,525 - +0.4 54,525 - -0.5 54,525 - -0.4 54,525 - -0.6 54,525 - +1.3 54,525 - -0.9 54,525 - -1.6 54,638 + +1.2 54,638 + +0.4 54,639 - -0.7 54,639 - +2.0 54,639 - -0.0 55,317 + MPMX19_02818 0.55 -1.2 55,317 + MPMX19_02818 0.55 -0.9 55,317 + MPMX19_02818 0.55 -1.8
Or see this region's nucleotide sequence