Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00982

Experiment: NL-CCM; ambient oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00980 and MPMX19_00981 are separated by 233 nucleotidesMPMX19_00981 and MPMX19_00982 are separated by 15 nucleotidesMPMX19_00982 and MPMX19_00983 are separated by 39 nucleotides MPMX19_00980: MPMX19_00980 - Methyl-accepting chemotaxis protein, at 1,019,194 to 1,020,882 _00980 MPMX19_00981: MPMX19_00981 - hypothetical protein, at 1,021,116 to 1,021,847 _00981 MPMX19_00982: MPMX19_00982 - Guanylate kinase, at 1,021,863 to 1,022,510 _00982 MPMX19_00983: MPMX19_00983 - hypothetical protein, at 1,022,550 to 1,023,446 _00983 Position (kb) 1021 1022 1023Strain fitness (log2 ratio) -3 -2 -1 0 1at 1020.969 kb on + strandat 1020.970 kb on - strandat 1020.985 kb on + strandat 1020.985 kb on + strandat 1020.986 kb on - strandat 1020.986 kb on - strandat 1020.986 kb on - strandat 1020.986 kb on - strandat 1020.986 kb on - strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.993 kb on + strandat 1020.994 kb on - strandat 1020.994 kb on - strandat 1020.994 kb on - strandat 1020.994 kb on - strandat 1020.994 kb on - strandat 1020.994 kb on - strandat 1020.994 kb on - strandat 1021.032 kb on + strandat 1021.032 kb on + strandat 1021.033 kb on - strandat 1021.074 kb on + strandat 1021.080 kb on + strandat 1021.081 kb on - strandat 1021.081 kb on - strandat 1021.081 kb on - strandat 1021.081 kb on - strandat 1021.089 kb on + strandat 1021.132 kb on - strandat 1021.209 kb on + strand, within MPMX19_00981at 1021.209 kb on + strand, within MPMX19_00981at 1021.209 kb on + strand, within MPMX19_00981at 1021.210 kb on - strand, within MPMX19_00981at 1021.210 kb on - strand, within MPMX19_00981at 1021.210 kb on - strand, within MPMX19_00981at 1021.210 kb on - strand, within MPMX19_00981at 1021.210 kb on - strand, within MPMX19_00981at 1021.210 kb on - strand, within MPMX19_00981at 1021.210 kb on - strand, within MPMX19_00981at 1021.671 kb on + strand, within MPMX19_00981at 1021.672 kb on - strand, within MPMX19_00981at 1021.672 kb on - strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.761 kb on + strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.762 kb on - strand, within MPMX19_00981at 1021.764 kb on + strand, within MPMX19_00981at 1021.765 kb on - strand, within MPMX19_00981at 1021.820 kb on - strandat 1021.820 kb on - strandat 1021.845 kb on + strandat 1021.845 kb on + strandat 1021.845 kb on + strandat 1021.845 kb on + strandat 1021.845 kb on + strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.846 kb on - strandat 1021.850 kb on - strandat 1021.865 kb on - strandat 1021.865 kb on - strandat 1021.872 kb on - strandat 1023.377 kb on - strandat 1023.377 kb on - strandat 1023.377 kb on - strandat 1023.377 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.490 kb on - strandat 1023.492 kb on - strandat 1023.492 kb on - strandat 1023.492 kb on - strandat 1023.492 kb on - strandat 1023.492 kb on - strandat 1023.492 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
remove
1,020,969 + -0.8
1,020,970 - -0.5
1,020,985 + -2.1
1,020,985 + -1.9
1,020,986 - -1.1
1,020,986 - -0.4
1,020,986 - -0.1
1,020,986 - -1.9
1,020,986 - -1.2
1,020,993 + -0.0
1,020,993 + -2.0
1,020,993 + -0.7
1,020,993 + +0.2
1,020,993 + -0.6
1,020,993 + -0.6
1,020,993 + +0.0
1,020,993 + +1.1
1,020,993 + -0.4
1,020,993 + -0.8
1,020,993 + +0.1
1,020,993 + -0.5
1,020,993 + +0.4
1,020,994 - +0.1
1,020,994 - -0.5
1,020,994 - -0.5
1,020,994 - -0.5
1,020,994 - +0.2
1,020,994 - +0.6
1,020,994 - +1.2
1,021,032 + -1.0
1,021,032 + -0.4
1,021,033 - -1.1
1,021,074 + +0.4
1,021,080 + -1.8
1,021,081 - -3.3
1,021,081 - +0.7
1,021,081 - +1.7
1,021,081 - -2.4
1,021,089 + -2.2
1,021,132 - +0.2
1,021,209 + MPMX19_00981 0.13 -0.3
1,021,209 + MPMX19_00981 0.13 -0.1
1,021,209 + MPMX19_00981 0.13 -0.8
1,021,210 - MPMX19_00981 0.13 -0.6
1,021,210 - MPMX19_00981 0.13 +1.1
1,021,210 - MPMX19_00981 0.13 -1.5
1,021,210 - MPMX19_00981 0.13 -0.3
1,021,210 - MPMX19_00981 0.13 -1.8
1,021,210 - MPMX19_00981 0.13 -0.9
1,021,210 - MPMX19_00981 0.13 +1.1
1,021,671 + MPMX19_00981 0.76 -0.3
1,021,672 - MPMX19_00981 0.76 -1.2
1,021,672 - MPMX19_00981 0.76 -0.1
1,021,761 + MPMX19_00981 0.88 -1.6
1,021,761 + MPMX19_00981 0.88 -2.4
1,021,761 + MPMX19_00981 0.88 +0.3
1,021,761 + MPMX19_00981 0.88 -1.1
1,021,761 + MPMX19_00981 0.88 -0.8
1,021,761 + MPMX19_00981 0.88 -2.2
1,021,761 + MPMX19_00981 0.88 -0.1
1,021,761 + MPMX19_00981 0.88 +0.4
1,021,761 + MPMX19_00981 0.88 -1.5
1,021,761 + MPMX19_00981 0.88 -1.0
1,021,761 + MPMX19_00981 0.88 -0.8
1,021,761 + MPMX19_00981 0.88 -0.6
1,021,762 - MPMX19_00981 0.88 -0.9
1,021,762 - MPMX19_00981 0.88 +1.2
1,021,762 - MPMX19_00981 0.88 -2.1
1,021,762 - MPMX19_00981 0.88 +0.3
1,021,762 - MPMX19_00981 0.88 +1.4
1,021,762 - MPMX19_00981 0.88 -0.0
1,021,762 - MPMX19_00981 0.88 -0.1
1,021,762 - MPMX19_00981 0.88 -0.4
1,021,762 - MPMX19_00981 0.88 -0.6
1,021,762 - MPMX19_00981 0.88 -0.1
1,021,762 - MPMX19_00981 0.88 -1.8
1,021,764 + MPMX19_00981 0.89 -0.9
1,021,765 - MPMX19_00981 0.89 -1.4
1,021,820 - -0.1
1,021,820 - -0.2
1,021,845 + +1.3
1,021,845 + -0.5
1,021,845 + -0.0
1,021,845 + -0.9
1,021,845 + -0.3
1,021,846 - -1.3
1,021,846 - -1.4
1,021,846 - -0.1
1,021,846 - +0.2
1,021,846 - -0.7
1,021,846 - -1.2
1,021,846 - -0.4
1,021,846 - -0.1
1,021,846 - -0.8
1,021,846 - -0.5
1,021,850 - -0.6
1,021,865 - -2.1
1,021,865 - -0.4
1,021,872 - -0.5
1,023,377 - -1.6
1,023,377 - +0.2
1,023,377 - +1.3
1,023,377 - -1.4
1,023,490 - +0.0
1,023,490 - -0.2
1,023,490 - -0.6
1,023,490 - +0.6
1,023,490 - +0.1
1,023,490 - +0.1
1,023,490 - +0.1
1,023,490 - +0.3
1,023,490 - -0.6
1,023,492 - -1.0
1,023,492 - +0.0
1,023,492 - +0.6
1,023,492 - +1.2
1,023,492 - -0.6
1,023,492 - -1.6

Or see this region's nucleotide sequence