Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00890 and MPMX19_00891 overlap by 4 nucleotides MPMX19_00891 and MPMX19_00892 overlap by 23 nucleotides MPMX19_00892 and MPMX19_00893 are separated by 413 nucleotides
MPMX19_00890: MPMX19_00890 - hypothetical protein, at 924,200 to 924,571
_00890
MPMX19_00891: MPMX19_00891 - hypothetical protein, at 924,568 to 925,380
_00891
MPMX19_00892: MPMX19_00892 - Thermostable carboxypeptidase 1, at 925,358 to 926,845
_00892
MPMX19_00893: MPMX19_00893 - Anthranilate synthase component 1, at 927,259 to 928,770
_00893
Position (kb) 925
926
927 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 924.534 kb on - strand at 924.534 kb on - strand at 924.828 kb on + strand, within MPMX19_00891 at 924.874 kb on + strand, within MPMX19_00891 at 924.874 kb on + strand, within MPMX19_00891 at 924.875 kb on - strand, within MPMX19_00891 at 925.124 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.277 kb on - strand, within MPMX19_00891 at 925.306 kb on + strand at 925.306 kb on + strand at 925.306 kb on + strand at 925.306 kb on + strand at 925.306 kb on + strand at 925.307 kb on - strand at 925.307 kb on - strand at 925.307 kb on - strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.721 kb on + strand, within MPMX19_00892 at 925.721 kb on + strand, within MPMX19_00892 at 925.721 kb on + strand, within MPMX19_00892 at 925.721 kb on + strand, within MPMX19_00892 at 925.721 kb on + strand, within MPMX19_00892 at 925.721 kb on + strand, within MPMX19_00892 at 925.721 kb on + strand, within MPMX19_00892 at 925.721 kb on + strand, within MPMX19_00892 at 925.722 kb on - strand, within MPMX19_00892 at 925.722 kb on - strand, within MPMX19_00892 at 925.722 kb on - strand, within MPMX19_00892 at 925.722 kb on - strand, within MPMX19_00892 at 925.722 kb on - strand, within MPMX19_00892 at 925.722 kb on - strand, within MPMX19_00892 at 925.811 kb on + strand, within MPMX19_00892 at 925.812 kb on - strand, within MPMX19_00892 at 925.812 kb on - strand, within MPMX19_00892 at 925.812 kb on - strand, within MPMX19_00892 at 926.102 kb on + strand, within MPMX19_00892 at 926.103 kb on - strand, within MPMX19_00892 at 926.103 kb on - strand, within MPMX19_00892 at 926.165 kb on + strand, within MPMX19_00892 at 926.165 kb on + strand, within MPMX19_00892 at 926.165 kb on + strand, within MPMX19_00892 at 926.165 kb on + strand, within MPMX19_00892 at 926.165 kb on + strand, within MPMX19_00892 at 926.166 kb on - strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.417 kb on + strand, within MPMX19_00892 at 926.417 kb on + strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.441 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.837 kb on + strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.096 kb on - strand at 927.097 kb on + strand at 927.097 kb on + strand at 927.097 kb on + strand at 927.098 kb on - strand at 927.098 kb on - strand at 927.127 kb on + strand at 927.335 kb on + strand at 927.335 kb on + strand at 927.335 kb on + strand at 927.336 kb on - strand at 927.336 kb on - strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.458 kb on + strand, within MPMX19_00893 at 927.458 kb on + strand, within MPMX19_00893 at 927.458 kb on + strand, within MPMX19_00893 at 927.459 kb on - strand, within MPMX19_00893 at 927.459 kb on - strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.644 kb on + strand, within MPMX19_00893 at 927.644 kb on + strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 924,534 - +0.2 924,534 - -0.6 924,828 + MPMX19_00891 0.32 -0.9 924,874 + MPMX19_00891 0.38 -1.3 924,874 + MPMX19_00891 0.38 +0.4 924,875 - MPMX19_00891 0.38 +1.1 925,124 + MPMX19_00891 0.68 -0.9 925,261 + MPMX19_00891 0.85 -0.6 925,261 + MPMX19_00891 0.85 -0.6 925,261 + MPMX19_00891 0.85 -1.0 925,261 + MPMX19_00891 0.85 -1.1 925,261 + MPMX19_00891 0.85 +3.0 925,261 + MPMX19_00891 0.85 +0.1 925,261 + MPMX19_00891 0.85 -0.6 925,261 + MPMX19_00891 0.85 -1.3 925,261 + MPMX19_00891 0.85 -0.6 925,261 + MPMX19_00891 0.85 -0.3 925,261 + MPMX19_00891 0.85 -0.3 925,262 - MPMX19_00891 0.85 -0.9 925,262 - MPMX19_00891 0.85 -0.6 925,262 - MPMX19_00891 0.85 -0.0 925,262 - MPMX19_00891 0.85 -0.8 925,262 - MPMX19_00891 0.85 -0.6 925,262 - MPMX19_00891 0.85 -0.8 925,262 - MPMX19_00891 0.85 +0.2 925,262 - MPMX19_00891 0.85 -0.2 925,262 - MPMX19_00891 0.85 -0.9 925,262 - MPMX19_00891 0.85 -0.8 925,262 - MPMX19_00891 0.85 +0.3 925,277 - MPMX19_00891 0.87 -0.8 925,306 + -0.4 925,306 + +0.8 925,306 + -1.2 925,306 + -0.6 925,306 + +0.8 925,307 - -0.0 925,307 - -0.5 925,307 - -0.3 925,367 + -0.8 925,367 + +0.0 925,367 + -1.8 925,367 + +0.5 925,367 + +0.4 925,367 + +0.7 925,367 + -0.3 925,367 + -0.7 925,368 - -0.6 925,368 - -1.6 925,368 - +0.1 925,368 - -1.0 925,368 - +1.0 925,368 - -0.2 925,721 + MPMX19_00892 0.24 +0.7 925,721 + MPMX19_00892 0.24 -2.0 925,721 + MPMX19_00892 0.24 -0.5 925,721 + MPMX19_00892 0.24 -3.1 925,721 + MPMX19_00892 0.24 +0.1 925,721 + MPMX19_00892 0.24 +0.1 925,721 + MPMX19_00892 0.24 -0.5 925,721 + MPMX19_00892 0.24 -1.1 925,722 - MPMX19_00892 0.24 -1.6 925,722 - MPMX19_00892 0.24 -0.3 925,722 - MPMX19_00892 0.24 -1.1 925,722 - MPMX19_00892 0.24 -0.3 925,722 - MPMX19_00892 0.24 +0.1 925,722 - MPMX19_00892 0.24 -0.7 925,811 + MPMX19_00892 0.30 -2.3 925,812 - MPMX19_00892 0.31 -0.3 925,812 - MPMX19_00892 0.31 -2.0 925,812 - MPMX19_00892 0.31 -1.5 926,102 + MPMX19_00892 0.50 -0.4 926,103 - MPMX19_00892 0.50 -1.0 926,103 - MPMX19_00892 0.50 -1.8 926,165 + MPMX19_00892 0.54 -0.7 926,165 + MPMX19_00892 0.54 -0.8 926,165 + MPMX19_00892 0.54 -0.8 926,165 + MPMX19_00892 0.54 -0.6 926,165 + MPMX19_00892 0.54 -0.5 926,166 - MPMX19_00892 0.54 -0.9 926,366 + MPMX19_00892 0.68 -0.5 926,366 + MPMX19_00892 0.68 -1.5 926,366 + MPMX19_00892 0.68 -0.3 926,366 + MPMX19_00892 0.68 -0.3 926,367 - MPMX19_00892 0.68 +0.8 926,367 - MPMX19_00892 0.68 +0.7 926,367 - MPMX19_00892 0.68 -0.8 926,417 + MPMX19_00892 0.71 -0.4 926,417 + MPMX19_00892 0.71 +0.1 926,418 - MPMX19_00892 0.71 -0.1 926,418 - MPMX19_00892 0.71 -0.9 926,418 - MPMX19_00892 0.71 -0.3 926,418 - MPMX19_00892 0.71 -1.1 926,418 - MPMX19_00892 0.71 -0.2 926,418 - MPMX19_00892 0.71 -0.6 926,441 + MPMX19_00892 0.73 +0.4 926,597 + MPMX19_00892 0.83 -1.4 926,597 + MPMX19_00892 0.83 -1.6 926,597 + MPMX19_00892 0.83 -0.8 926,598 - MPMX19_00892 0.83 +0.3 926,598 - MPMX19_00892 0.83 -1.0 926,598 - MPMX19_00892 0.83 -1.3 926,598 - MPMX19_00892 0.83 +0.7 926,598 - MPMX19_00892 0.83 +0.2 926,609 + MPMX19_00892 0.84 +0.2 926,609 + MPMX19_00892 0.84 +0.4 926,609 + MPMX19_00892 0.84 -2.1 926,609 + MPMX19_00892 0.84 +0.3 926,609 + MPMX19_00892 0.84 -1.0 926,610 - MPMX19_00892 0.84 -0.1 926,610 - MPMX19_00892 0.84 -0.4 926,610 - MPMX19_00892 0.84 -0.8 926,610 - MPMX19_00892 0.84 +0.8 926,610 - MPMX19_00892 0.84 -2.0 926,610 - MPMX19_00892 0.84 +0.4 926,610 - MPMX19_00892 0.84 +0.1 926,610 - MPMX19_00892 0.84 -0.5 926,837 + -0.5 926,838 - +0.1 926,838 - -0.1 926,838 - +0.2 926,838 - -1.2 926,900 + -0.4 926,900 + -1.1 926,900 + +0.3 926,900 + -1.2 926,900 + -0.6 927,092 + -2.6 927,092 + -0.3 927,092 + -0.9 927,092 + -0.6 927,092 + +0.1 927,092 + -0.5 927,093 - +0.5 927,093 - +0.4 927,093 - -1.2 927,093 - -0.8 927,093 - +0.5 927,093 - -0.6 927,093 - -2.1 927,093 - -1.1 927,093 - +0.7 927,093 - -0.9 927,093 - -0.7 927,095 + -0.2 927,095 + +0.5 927,095 + -0.6 927,095 + +0.3 927,095 + -1.4 927,095 + -0.7 927,096 - -1.1 927,097 + -0.2 927,097 + +0.3 927,097 + -0.2 927,098 - -1.5 927,098 - -1.1 927,127 + -1.3 927,335 + -1.0 927,335 + +0.2 927,335 + -1.2 927,336 - -1.8 927,336 - -0.7 927,386 + -1.1 927,386 + -1.5 927,386 + +0.3 927,386 + +1.2 927,386 + -0.2 927,386 + -0.3 927,386 + -1.1 927,386 + -0.9 927,386 + -0.1 927,386 + +0.3 927,386 + -0.3 927,386 + -1.5 927,386 + -0.4 927,386 + -0.5 927,386 + -0.0 927,386 + +0.3 927,386 + -1.3 927,386 + -0.3 927,386 + +0.2 927,386 + +0.1 927,386 + +0.7 927,386 + -0.3 927,386 + -1.1 927,386 + +0.8 927,386 + -0.2 927,386 + -0.7 927,387 - +1.2 927,387 - +0.1 927,387 - +0.2 927,387 - -0.1 927,387 - -0.3 927,387 - +0.1 927,387 - -0.7 927,387 - -0.7 927,387 - -1.8 927,387 - +0.4 927,387 - -0.8 927,387 - -0.1 927,387 - -1.7 927,387 - -0.0 927,387 - -0.6 927,387 - -1.1 927,387 - +0.5 927,387 - +0.2 927,387 - -0.2 927,387 - +0.7 927,387 - -0.7 927,387 - -0.2 927,387 - +0.2 927,387 - -0.9 927,387 - -0.3 927,387 - -0.4 927,387 - -0.2 927,387 - -0.5 927,387 - -0.0 927,387 - -2.0 927,387 - -0.9 927,458 + MPMX19_00893 0.13 +0.2 927,458 + MPMX19_00893 0.13 -0.3 927,458 + MPMX19_00893 0.13 -0.9 927,459 - MPMX19_00893 0.13 -2.0 927,459 - MPMX19_00893 0.13 -0.6 927,476 + MPMX19_00893 0.14 +0.1 927,476 + MPMX19_00893 0.14 -1.5 927,476 + MPMX19_00893 0.14 -0.9 927,477 - MPMX19_00893 0.14 -1.6 927,477 - MPMX19_00893 0.14 -1.2 927,477 - MPMX19_00893 0.14 -2.0 927,477 - MPMX19_00893 0.14 +0.7 927,644 + MPMX19_00893 0.25 +1.0 927,644 + MPMX19_00893 0.25 +0.1 927,645 - MPMX19_00893 0.26 +0.5 927,645 - MPMX19_00893 0.26 -3.3 927,645 - MPMX19_00893 0.26 -1.0 927,645 - MPMX19_00893 0.26 +0.4 927,645 - MPMX19_00893 0.26 -1.9 927,829 - MPMX19_00893 0.38 -3.0 927,829 - MPMX19_00893 0.38 -0.1
Or see this region's nucleotide sequence