Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF418 and GFF419 are separated by 17 nucleotides GFF419 and GFF420 are separated by 220 nucleotides GFF420 and GFF421 are separated by 6 nucleotides GFF421 and GFF422 overlap by 4 nucleotides
GFF418 - Adaptive-response sensory-kinase SasA, at 461,027 to 462,361
GFF418
GFF419 - hypothetical protein, at 462,379 to 462,708
GFF419
GFF420 - hypothetical protein, at 462,929 to 463,186
GFF420
GFF421 - Response regulator PleD, at 463,193 to 463,645
GFF421
GFF422 - Sensor histidine kinase RcsC, at 463,642 to 465,624
GFF422
Position (kb) 463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 462.211 kb on + strand, within GFF418 at 462.211 kb on + strand, within GFF418 at 462.212 kb on - strand, within GFF418 at 462.360 kb on - strand at 462.477 kb on - strand, within GFF419 at 462.477 kb on - strand, within GFF419 at 462.514 kb on + strand, within GFF419 at 462.592 kb on + strand, within GFF419 at 462.685 kb on + strand at 462.686 kb on - strand at 462.689 kb on + strand at 462.689 kb on + strand at 462.689 kb on + strand at 462.689 kb on + strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.690 kb on - strand at 462.744 kb on + strand at 462.745 kb on - strand at 462.745 kb on - strand at 462.745 kb on - strand at 462.759 kb on - strand at 462.805 kb on + strand at 462.816 kb on + strand at 462.833 kb on + strand at 462.834 kb on - strand at 462.859 kb on + strand at 462.860 kb on - strand at 462.860 kb on - strand at 462.904 kb on - strand at 462.911 kb on + strand at 462.911 kb on + strand at 462.912 kb on - strand at 462.934 kb on + strand at 462.935 kb on - strand at 462.962 kb on - strand, within GFF420 at 462.969 kb on + strand, within GFF420 at 462.969 kb on + strand, within GFF420 at 462.970 kb on - strand, within GFF420 at 462.970 kb on - strand, within GFF420 at 462.970 kb on - strand, within GFF420 at 462.970 kb on - strand, within GFF420 at 463.034 kb on - strand, within GFF420 at 463.050 kb on + strand, within GFF420 at 463.051 kb on - strand, within GFF420 at 463.105 kb on - strand, within GFF420 at 463.147 kb on - strand, within GFF420 at 463.149 kb on + strand, within GFF420 at 463.150 kb on - strand, within GFF420 at 463.150 kb on - strand, within GFF420 at 463.184 kb on + strand at 463.195 kb on - strand at 463.200 kb on + strand at 463.380 kb on - strand, within GFF421 at 463.395 kb on + strand, within GFF421 at 463.396 kb on - strand, within GFF421 at 463.396 kb on - strand, within GFF421 at 463.396 kb on - strand, within GFF421 at 463.396 kb on - strand, within GFF421 at 463.396 kb on - strand, within GFF421 at 463.396 kb on - strand, within GFF421 at 463.396 kb on - strand, within GFF421 at 463.607 kb on - strand at 463.637 kb on + strand at 463.637 kb on + strand at 463.638 kb on - strand at 463.638 kb on - strand at 463.638 kb on - strand at 463.638 kb on - strand at 463.638 kb on - strand at 463.638 kb on - strand at 463.668 kb on + strand at 463.675 kb on + strand at 463.675 kb on + strand at 463.675 kb on + strand at 463.675 kb on + strand at 463.675 kb on + strand at 463.676 kb on - strand at 463.676 kb on - strand at 463.676 kb on - strand at 463.693 kb on + strand at 463.699 kb on + strand at 463.700 kb on - strand at 463.700 kb on - strand at 463.716 kb on - strand at 463.716 kb on - strand at 463.723 kb on - strand at 463.723 kb on - strand at 463.775 kb on - strand at 463.874 kb on - strand, within GFF422 at 463.891 kb on - strand, within GFF422 at 463.891 kb on - strand, within GFF422 at 464.134 kb on + strand, within GFF422 at 464.142 kb on + strand, within GFF422 at 464.142 kb on + strand, within GFF422 at 464.229 kb on + strand, within GFF422 at 464.229 kb on + strand, within GFF422 at 464.230 kb on - strand, within GFF422 at 464.340 kb on - strand, within GFF422 at 464.340 kb on - strand, within GFF422 at 464.376 kb on - strand, within GFF422 at 464.400 kb on + strand, within GFF422 at 464.400 kb on + strand, within GFF422 at 464.401 kb on - strand, within GFF422 at 464.401 kb on - strand, within GFF422 at 464.475 kb on + strand, within GFF422 at 464.510 kb on + strand, within GFF422 at 464.511 kb on - strand, within GFF422 at 464.511 kb on - strand, within GFF422 at 464.521 kb on + strand, within GFF422 at 464.521 kb on + strand, within GFF422 at 464.522 kb on - strand, within GFF422 at 464.522 kb on - strand, within GFF422 at 464.611 kb on + strand, within GFF422
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 462,211 + GFF418 0.89 -0.6 462,211 + GFF418 0.89 +0.3 462,212 - GFF418 0.89 +0.0 462,360 - -0.5 462,477 - GFF419 0.30 +1.0 462,477 - GFF419 0.30 -0.4 462,514 + GFF419 0.41 -1.0 462,592 + GFF419 0.65 -0.6 462,685 + -2.0 462,686 - +0.6 462,689 + -1.2 462,689 + -0.1 462,689 + +0.2 462,689 + +0.3 462,690 - +0.0 462,690 - +0.6 462,690 - -0.4 462,690 - -0.4 462,690 - -1.4 462,690 - -2.3 462,690 - -2.9 462,690 - -1.3 462,690 - -0.8 462,690 - -1.4 462,744 + +0.6 462,745 - +1.3 462,745 - -0.1 462,745 - -1.3 462,759 - -0.7 462,805 + -1.0 462,816 + +0.6 462,833 + -0.3 462,834 - -2.8 462,859 + -1.0 462,860 - +0.3 462,860 - -1.1 462,904 - -1.3 462,911 + -0.4 462,911 + -0.5 462,912 - -0.1 462,934 + -1.4 462,935 - -1.2 462,962 - GFF420 0.13 -1.0 462,969 + GFF420 0.16 -0.8 462,969 + GFF420 0.16 -1.3 462,970 - GFF420 0.16 -0.8 462,970 - GFF420 0.16 -2.4 462,970 - GFF420 0.16 -0.3 462,970 - GFF420 0.16 -0.3 463,034 - GFF420 0.41 -1.6 463,050 + GFF420 0.47 -0.5 463,051 - GFF420 0.47 -1.3 463,105 - GFF420 0.68 +0.3 463,147 - GFF420 0.84 -1.6 463,149 + GFF420 0.85 -0.3 463,150 - GFF420 0.86 +0.0 463,150 - GFF420 0.86 -0.7 463,184 + -0.3 463,195 - -0.8 463,200 + +0.2 463,380 - GFF421 0.41 -0.3 463,395 + GFF421 0.45 -1.1 463,396 - GFF421 0.45 -0.6 463,396 - GFF421 0.45 -1.7 463,396 - GFF421 0.45 +0.5 463,396 - GFF421 0.45 -0.6 463,396 - GFF421 0.45 -0.6 463,396 - GFF421 0.45 -0.4 463,396 - GFF421 0.45 -0.3 463,607 - +0.0 463,637 + +0.1 463,637 + -1.3 463,638 - -1.6 463,638 - -1.1 463,638 - +0.0 463,638 - -1.1 463,638 - -1.1 463,638 - -0.9 463,668 + -1.3 463,675 + +0.8 463,675 + -0.3 463,675 + -0.2 463,675 + -0.9 463,675 + -0.6 463,676 - +0.6 463,676 - -0.8 463,676 - -0.4 463,693 + -0.7 463,699 + +0.0 463,700 - -0.5 463,700 - -0.6 463,716 - -1.0 463,716 - -0.0 463,723 - -0.2 463,723 - -1.8 463,775 - -1.1 463,874 - GFF422 0.12 -0.7 463,891 - GFF422 0.13 +0.1 463,891 - GFF422 0.13 +0.0 464,134 + GFF422 0.25 -0.6 464,142 + GFF422 0.25 +0.1 464,142 + GFF422 0.25 -1.0 464,229 + GFF422 0.30 -1.3 464,229 + GFF422 0.30 -0.6 464,230 - GFF422 0.30 +0.3 464,340 - GFF422 0.35 -0.6 464,340 - GFF422 0.35 -2.1 464,376 - GFF422 0.37 +0.0 464,400 + GFF422 0.38 -1.0 464,400 + GFF422 0.38 +0.3 464,401 - GFF422 0.38 -1.6 464,401 - GFF422 0.38 -0.6 464,475 + GFF422 0.42 -0.5 464,510 + GFF422 0.44 -0.5 464,511 - GFF422 0.44 -1.3 464,511 - GFF422 0.44 -3.0 464,521 + GFF422 0.44 -1.0 464,521 + GFF422 0.44 +0.6 464,522 - GFF422 0.44 -0.3 464,522 - GFF422 0.44 -1.0 464,611 + GFF422 0.49 -0.3
Or see this region's nucleotide sequence