Strain Fitness in Methylophilus sp. DMC18 around GFF2083

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2081 and GFF2082 are separated by 59 nucleotidesGFF2082 and GFF2083 are separated by 97 nucleotidesGFF2083 and GFF2084 are separated by 54 nucleotidesGFF2084 and GFF2085 are separated by 92 nucleotides GFF2081 - hypothetical protein, at 127,099 to 127,473 GFF2081 GFF2082 - putative oxidoreductase, at 127,533 to 128,357 GFF2082 GFF2083 - hypothetical protein, at 128,455 to 128,676 GFF2083 GFF2084 - Arylamine N-acetyltransferase / N-hydroxyarylamine O-acetyltransferase, at 128,731 to 129,495 GFF2084 GFF2085 - Energy-dependent translational throttle protein EttA, at 129,588 to 131,252 GFF2085 Position (kb) 128 129Strain fitness (log2 ratio) -2 -1 0 1at 127.475 kb on + strandat 127.476 kb on - strandat 127.476 kb on - strandat 127.497 kb on + strandat 127.536 kb on + strandat 127.537 kb on - strandat 127.571 kb on + strandat 127.571 kb on + strandat 127.572 kb on - strandat 127.572 kb on - strandat 127.654 kb on + strand, within GFF2082at 127.654 kb on + strand, within GFF2082at 127.654 kb on + strand, within GFF2082at 127.654 kb on + strand, within GFF2082at 127.654 kb on + strand, within GFF2082at 127.654 kb on + strand, within GFF2082at 127.654 kb on + strand, within GFF2082at 127.654 kb on + strand, within GFF2082at 127.655 kb on - strand, within GFF2082at 127.655 kb on - strand, within GFF2082at 127.655 kb on - strand, within GFF2082at 127.655 kb on - strand, within GFF2082at 127.730 kb on + strand, within GFF2082at 127.730 kb on + strand, within GFF2082at 127.730 kb on + strand, within GFF2082at 127.731 kb on - strand, within GFF2082at 127.737 kb on + strand, within GFF2082at 127.737 kb on + strand, within GFF2082at 127.737 kb on + strand, within GFF2082at 127.738 kb on - strand, within GFF2082at 127.750 kb on + strand, within GFF2082at 127.750 kb on + strand, within GFF2082at 127.750 kb on + strand, within GFF2082at 127.750 kb on + strand, within GFF2082at 127.751 kb on - strand, within GFF2082at 127.751 kb on - strand, within GFF2082at 127.751 kb on - strand, within GFF2082at 127.801 kb on - strand, within GFF2082at 127.815 kb on - strand, within GFF2082at 127.937 kb on + strand, within GFF2082at 127.984 kb on + strand, within GFF2082at 127.985 kb on - strand, within GFF2082at 128.048 kb on + strand, within GFF2082at 128.063 kb on + strand, within GFF2082at 128.064 kb on - strand, within GFF2082at 128.067 kb on + strand, within GFF2082at 128.068 kb on - strand, within GFF2082at 128.068 kb on - strand, within GFF2082at 128.068 kb on - strand, within GFF2082at 128.100 kb on + strand, within GFF2082at 128.101 kb on - strand, within GFF2082at 128.134 kb on - strand, within GFF2082at 128.167 kb on - strand, within GFF2082at 128.243 kb on + strand, within GFF2082at 128.337 kb on - strandat 128.402 kb on + strandat 128.402 kb on + strandat 128.403 kb on - strandat 128.403 kb on - strandat 128.406 kb on + strandat 128.406 kb on + strandat 128.406 kb on + strandat 128.406 kb on + strandat 128.421 kb on + strandat 128.455 kb on - strandat 128.455 kb on - strandat 128.487 kb on - strand, within GFF2083at 128.487 kb on - strand, within GFF2083at 128.487 kb on - strand, within GFF2083at 128.563 kb on + strand, within GFF2083at 128.563 kb on + strand, within GFF2083at 128.563 kb on + strand, within GFF2083at 128.563 kb on + strand, within GFF2083at 128.564 kb on - strand, within GFF2083at 128.564 kb on - strand, within GFF2083at 128.565 kb on + strand, within GFF2083at 128.565 kb on + strand, within GFF2083at 128.565 kb on + strand, within GFF2083at 128.565 kb on + strand, within GFF2083at 128.565 kb on + strand, within GFF2083at 128.640 kb on + strand, within GFF2083at 128.640 kb on + strand, within GFF2083at 128.641 kb on - strand, within GFF2083at 128.641 kb on - strand, within GFF2083at 128.674 kb on + strandat 128.732 kb on + strandat 128.732 kb on + strandat 128.732 kb on + strandat 128.757 kb on + strandat 128.757 kb on + strandat 128.757 kb on + strandat 128.757 kb on + strandat 128.758 kb on - strandat 128.758 kb on - strandat 128.758 kb on - strandat 128.785 kb on + strandat 128.866 kb on + strand, within GFF2084at 128.866 kb on + strand, within GFF2084at 128.866 kb on + strand, within GFF2084at 128.866 kb on + strand, within GFF2084at 128.866 kb on + strand, within GFF2084at 128.866 kb on + strand, within GFF2084at 128.867 kb on - strand, within GFF2084at 128.867 kb on - strand, within GFF2084at 128.869 kb on + strand, within GFF2084at 128.869 kb on + strand, within GFF2084at 128.869 kb on + strand, within GFF2084at 128.869 kb on + strand, within GFF2084at 128.870 kb on - strand, within GFF2084at 128.870 kb on - strand, within GFF2084at 128.870 kb on - strand, within GFF2084at 128.870 kb on - strand, within GFF2084at 128.870 kb on - strand, within GFF2084at 128.934 kb on - strand, within GFF2084at 129.008 kb on - strand, within GFF2084at 129.008 kb on - strand, within GFF2084at 129.010 kb on + strand, within GFF2084at 129.010 kb on + strand, within GFF2084at 129.042 kb on + strand, within GFF2084at 129.043 kb on - strand, within GFF2084at 129.081 kb on + strand, within GFF2084at 129.081 kb on + strand, within GFF2084at 129.082 kb on - strand, within GFF2084at 129.082 kb on - strand, within GFF2084at 129.085 kb on + strand, within GFF2084at 129.086 kb on - strand, within GFF2084at 129.110 kb on + strand, within GFF2084at 129.110 kb on + strand, within GFF2084at 129.110 kb on + strand, within GFF2084at 129.110 kb on + strand, within GFF2084at 129.111 kb on - strand, within GFF2084at 129.111 kb on - strand, within GFF2084at 129.111 kb on - strand, within GFF2084at 129.134 kb on - strand, within GFF2084at 129.247 kb on + strand, within GFF2084at 129.248 kb on - strand, within GFF2084at 129.285 kb on - strand, within GFF2084at 129.303 kb on - strand, within GFF2084at 129.306 kb on + strand, within GFF2084at 129.306 kb on + strand, within GFF2084at 129.307 kb on - strand, within GFF2084at 129.319 kb on + strand, within GFF2084at 129.320 kb on - strand, within GFF2084at 129.358 kb on + strand, within GFF2084at 129.358 kb on + strand, within GFF2084at 129.359 kb on - strand, within GFF2084at 129.359 kb on - strand, within GFF2084at 129.359 kb on - strand, within GFF2084at 129.359 kb on - strand, within GFF2084at 129.359 kb on - strand, within GFF2084at 129.359 kb on - strand, within GFF2084at 129.388 kb on + strand, within GFF2084at 129.446 kb on + strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.447 kb on - strandat 129.451 kb on + strandat 129.451 kb on + strandat 129.452 kb on - strandat 129.542 kb on + strandat 129.556 kb on + strandat 129.606 kb on - strandat 129.606 kb on - strandat 129.615 kb on - strandat 129.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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127,475 + +0.4
127,476 - +1.0
127,476 - +1.0
127,497 + +0.0
127,536 + -0.4
127,537 - -1.3
127,571 + +0.4
127,571 + +0.6
127,572 - +0.3
127,572 - -1.0
127,654 + GFF2082 0.15 -0.4
127,654 + GFF2082 0.15 +0.1
127,654 + GFF2082 0.15 -1.3
127,654 + GFF2082 0.15 +0.6
127,654 + GFF2082 0.15 -0.3
127,654 + GFF2082 0.15 -0.5
127,654 + GFF2082 0.15 -2.0
127,654 + GFF2082 0.15 -0.3
127,655 - GFF2082 0.15 -1.4
127,655 - GFF2082 0.15 -1.8
127,655 - GFF2082 0.15 -0.3
127,655 - GFF2082 0.15 -0.7
127,730 + GFF2082 0.24 +0.6
127,730 + GFF2082 0.24 -0.6
127,730 + GFF2082 0.24 -0.8
127,731 - GFF2082 0.24 -0.5
127,737 + GFF2082 0.25 +0.3
127,737 + GFF2082 0.25 +0.2
127,737 + GFF2082 0.25 -1.0
127,738 - GFF2082 0.25 -1.3
127,750 + GFF2082 0.26 -0.3
127,750 + GFF2082 0.26 -0.4
127,750 + GFF2082 0.26 +0.7
127,750 + GFF2082 0.26 -0.4
127,751 - GFF2082 0.26 -1.0
127,751 - GFF2082 0.26 -1.6
127,751 - GFF2082 0.26 +0.6
127,801 - GFF2082 0.32 -0.2
127,815 - GFF2082 0.34 -1.1
127,937 + GFF2082 0.49 -0.7
127,984 + GFF2082 0.55 -1.0
127,985 - GFF2082 0.55 -1.3
128,048 + GFF2082 0.62 -0.6
128,063 + GFF2082 0.64 +0.6
128,064 - GFF2082 0.64 -1.0
128,067 + GFF2082 0.65 -1.8
128,068 - GFF2082 0.65 -0.7
128,068 - GFF2082 0.65 -1.0
128,068 - GFF2082 0.65 -1.1
128,100 + GFF2082 0.69 -1.0
128,101 - GFF2082 0.69 +1.0
128,134 - GFF2082 0.73 -0.6
128,167 - GFF2082 0.77 +0.5
128,243 + GFF2082 0.86 +0.6
128,337 - +0.1
128,402 + -2.5
128,402 + -0.8
128,403 - -1.0
128,403 - -0.6
128,406 + +0.1
128,406 + -0.4
128,406 + -2.0
128,406 + +1.0
128,421 + -0.6
128,455 - -0.1
128,455 - -0.5
128,487 - GFF2083 0.14 -0.7
128,487 - GFF2083 0.14 -0.2
128,487 - GFF2083 0.14 -1.0
128,563 + GFF2083 0.49 +0.1
128,563 + GFF2083 0.49 -1.0
128,563 + GFF2083 0.49 -0.6
128,563 + GFF2083 0.49 -0.2
128,564 - GFF2083 0.49 -0.6
128,564 - GFF2083 0.49 -0.8
128,565 + GFF2083 0.50 -1.2
128,565 + GFF2083 0.50 +1.0
128,565 + GFF2083 0.50 +0.8
128,565 + GFF2083 0.50 -2.1
128,565 + GFF2083 0.50 -1.0
128,640 + GFF2083 0.83 -0.2
128,640 + GFF2083 0.83 +1.4
128,641 - GFF2083 0.84 +0.7
128,641 - GFF2083 0.84 -0.4
128,674 + -1.7
128,732 + -0.2
128,732 + -1.3
128,732 + -1.6
128,757 + +0.0
128,757 + -1.8
128,757 + -0.4
128,757 + -0.6
128,758 - +1.0
128,758 - -1.1
128,758 - -1.3
128,785 + -0.7
128,866 + GFF2084 0.18 -0.7
128,866 + GFF2084 0.18 -1.4
128,866 + GFF2084 0.18 -0.9
128,866 + GFF2084 0.18 +0.6
128,866 + GFF2084 0.18 -1.1
128,866 + GFF2084 0.18 -0.5
128,867 - GFF2084 0.18 -1.9
128,867 - GFF2084 0.18 -0.6
128,869 + GFF2084 0.18 -0.2
128,869 + GFF2084 0.18 -1.0
128,869 + GFF2084 0.18 -1.0
128,869 + GFF2084 0.18 -0.1
128,870 - GFF2084 0.18 -0.7
128,870 - GFF2084 0.18 -0.6
128,870 - GFF2084 0.18 -0.7
128,870 - GFF2084 0.18 -0.1
128,870 - GFF2084 0.18 -1.4
128,934 - GFF2084 0.27 -0.6
129,008 - GFF2084 0.36 -1.0
129,008 - GFF2084 0.36 -0.6
129,010 + GFF2084 0.36 +0.7
129,010 + GFF2084 0.36 -1.2
129,042 + GFF2084 0.41 -1.0
129,043 - GFF2084 0.41 -1.0
129,081 + GFF2084 0.46 -1.5
129,081 + GFF2084 0.46 -0.3
129,082 - GFF2084 0.46 -1.3
129,082 - GFF2084 0.46 -0.5
129,085 + GFF2084 0.46 -1.5
129,086 - GFF2084 0.46 -1.6
129,110 + GFF2084 0.50 -0.2
129,110 + GFF2084 0.50 -0.8
129,110 + GFF2084 0.50 -0.9
129,110 + GFF2084 0.50 -0.6
129,111 - GFF2084 0.50 -0.3
129,111 - GFF2084 0.50 -1.2
129,111 - GFF2084 0.50 -0.7
129,134 - GFF2084 0.53 -0.2
129,247 + GFF2084 0.67 -0.2
129,248 - GFF2084 0.68 -1.9
129,285 - GFF2084 0.72 -1.0
129,303 - GFF2084 0.75 -1.4
129,306 + GFF2084 0.75 -1.0
129,306 + GFF2084 0.75 -0.6
129,307 - GFF2084 0.75 +0.1
129,319 + GFF2084 0.77 +1.0
129,320 - GFF2084 0.77 +1.2
129,358 + GFF2084 0.82 -1.8
129,358 + GFF2084 0.82 -0.9
129,359 - GFF2084 0.82 +1.0
129,359 - GFF2084 0.82 -0.2
129,359 - GFF2084 0.82 -0.5
129,359 - GFF2084 0.82 +0.6
129,359 - GFF2084 0.82 -1.2
129,359 - GFF2084 0.82 +0.5
129,388 + GFF2084 0.86 +0.7
129,446 + -1.6
129,447 - -1.3
129,447 - -1.0
129,447 - +0.0
129,447 - -0.4
129,447 - -1.0
129,447 - -1.3
129,447 - -1.3
129,447 - -1.8
129,447 - -0.6
129,451 + +1.3
129,451 + +0.0
129,452 - -0.7
129,542 + +0.1
129,556 + -0.3
129,606 - +0.3
129,606 - -1.5
129,615 - +0.0
129,667 + -0.1

Or see this region's nucleotide sequence