Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1513 and GFF1514 are separated by 124 nucleotides GFF1514 and GFF1515 are separated by 5 nucleotides GFF1515 and GFF1516 are separated by 12 nucleotides
GFF1513 - hypothetical protein, at 154,488 to 155,561
GFF1513
GFF1514 - Cytosol aminopeptidase, at 155,686 to 157,167
GFF1514
GFF1515 - DNA polymerase III subunit chi, at 157,173 to 157,601
GFF1515
GFF1516 - hypothetical protein, at 157,614 to 158,567
GFF1516
Position (kb) 155
156
157
158 Strain fitness (log2 ratio) -2
-1
0
1 at 155.641 kb on - strand at 155.764 kb on - strand at 155.977 kb on - strand, within GFF1514 at 156.094 kb on + strand, within GFF1514 at 156.094 kb on + strand, within GFF1514 at 156.095 kb on - strand, within GFF1514 at 156.280 kb on + strand, within GFF1514 at 156.542 kb on - strand, within GFF1514 at 156.642 kb on + strand, within GFF1514 at 156.642 kb on + strand, within GFF1514 at 156.642 kb on + strand, within GFF1514 at 156.687 kb on + strand, within GFF1514 at 156.687 kb on + strand, within GFF1514 at 156.710 kb on + strand, within GFF1514 at 156.796 kb on - strand, within GFF1514 at 156.943 kb on + strand, within GFF1514 at 156.944 kb on - strand, within GFF1514 at 157.036 kb on + strand at 157.141 kb on + strand at 157.141 kb on + strand at 157.142 kb on - strand at 157.165 kb on + strand at 157.165 kb on + strand at 157.165 kb on + strand at 157.166 kb on - strand at 157.191 kb on + strand at 157.193 kb on + strand at 157.193 kb on + strand at 157.193 kb on + strand at 157.208 kb on + strand at 157.231 kb on + strand, within GFF1515 at 157.231 kb on + strand, within GFF1515 at 157.231 kb on + strand, within GFF1515 at 157.231 kb on + strand, within GFF1515 at 157.232 kb on - strand, within GFF1515 at 157.232 kb on - strand, within GFF1515 at 157.272 kb on + strand, within GFF1515 at 157.272 kb on + strand, within GFF1515 at 157.272 kb on + strand, within GFF1515 at 157.272 kb on + strand, within GFF1515 at 157.342 kb on + strand, within GFF1515 at 157.429 kb on + strand, within GFF1515 at 157.429 kb on + strand, within GFF1515 at 157.429 kb on + strand, within GFF1515 at 157.430 kb on - strand, within GFF1515 at 157.437 kb on - strand, within GFF1515 at 157.545 kb on + strand, within GFF1515 at 157.545 kb on + strand, within GFF1515 at 157.574 kb on + strand at 157.574 kb on + strand at 157.574 kb on + strand at 157.574 kb on + strand at 157.575 kb on - strand at 157.729 kb on + strand, within GFF1516 at 157.819 kb on - strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.879 kb on + strand, within GFF1516 at 157.880 kb on - strand, within GFF1516 at 157.880 kb on - strand, within GFF1516 at 157.880 kb on - strand, within GFF1516 at 157.880 kb on - strand, within GFF1516 at 157.880 kb on - strand, within GFF1516 at 158.063 kb on + strand, within GFF1516 at 158.063 kb on + strand, within GFF1516 at 158.063 kb on + strand, within GFF1516 at 158.145 kb on - strand, within GFF1516
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 155,641 - +0.0 155,764 - -1.0 155,977 - GFF1514 0.20 -1.0 156,094 + GFF1514 0.28 +0.0 156,094 + GFF1514 0.28 +0.0 156,095 - GFF1514 0.28 -1.0 156,280 + GFF1514 0.40 -1.0 156,542 - GFF1514 0.58 -1.0 156,642 + GFF1514 0.65 -1.3 156,642 + GFF1514 0.65 -0.4 156,642 + GFF1514 0.65 -1.6 156,687 + GFF1514 0.68 -0.6 156,687 + GFF1514 0.68 -2.0 156,710 + GFF1514 0.69 -0.3 156,796 - GFF1514 0.75 -1.2 156,943 + GFF1514 0.85 -1.0 156,944 - GFF1514 0.85 -0.7 157,036 + -0.9 157,141 + -0.8 157,141 + -1.3 157,142 - -2.2 157,165 + +0.1 157,165 + -1.2 157,165 + -1.0 157,166 - -1.6 157,191 + +0.6 157,193 + -1.3 157,193 + -0.8 157,193 + -1.3 157,208 + +0.0 157,231 + GFF1515 0.14 -0.5 157,231 + GFF1515 0.14 -1.1 157,231 + GFF1515 0.14 -1.2 157,231 + GFF1515 0.14 -1.3 157,232 - GFF1515 0.14 -0.9 157,232 - GFF1515 0.14 -2.2 157,272 + GFF1515 0.23 -0.3 157,272 + GFF1515 0.23 +0.0 157,272 + GFF1515 0.23 -0.5 157,272 + GFF1515 0.23 -2.7 157,342 + GFF1515 0.39 -1.0 157,429 + GFF1515 0.60 -1.3 157,429 + GFF1515 0.60 -1.0 157,429 + GFF1515 0.60 +0.4 157,430 - GFF1515 0.60 -0.4 157,437 - GFF1515 0.62 -0.7 157,545 + GFF1515 0.87 +1.0 157,545 + GFF1515 0.87 -2.0 157,574 + -0.7 157,574 + -0.5 157,574 + -0.7 157,574 + +0.5 157,575 - +0.0 157,729 + GFF1516 0.12 +0.7 157,819 - GFF1516 0.21 -0.8 157,879 + GFF1516 0.28 -0.3 157,879 + GFF1516 0.28 -0.1 157,879 + GFF1516 0.28 +1.0 157,879 + GFF1516 0.28 -0.5 157,879 + GFF1516 0.28 -1.3 157,879 + GFF1516 0.28 -1.0 157,879 + GFF1516 0.28 -0.6 157,879 + GFF1516 0.28 -1.0 157,879 + GFF1516 0.28 +0.6 157,879 + GFF1516 0.28 -0.8 157,879 + GFF1516 0.28 +0.7 157,879 + GFF1516 0.28 -1.3 157,879 + GFF1516 0.28 -0.3 157,880 - GFF1516 0.28 -0.3 157,880 - GFF1516 0.28 +0.0 157,880 - GFF1516 0.28 -0.3 157,880 - GFF1516 0.28 +0.0 157,880 - GFF1516 0.28 -1.2 158,063 + GFF1516 0.47 +0.2 158,063 + GFF1516 0.47 -1.7 158,063 + GFF1516 0.47 +0.0 158,145 - GFF1516 0.56 -0.9
Or see this region's nucleotide sequence