Strain Fitness in Methylophilus sp. DMC18 around GFF1054

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1052 and GFF1053 are separated by 21 nucleotidesGFF1053 and GFF1054 are separated by 183 nucleotidesGFF1054 and GFF1055 are separated by 89 nucleotidesGFF1055 and GFF1056 are separated by 5 nucleotides GFF1052 - S-methyl-5'-thioinosine phosphorylase, at 290,979 to 291,734 GFF1052 GFF1053 - Peptide deformylase, at 291,756 to 292,289 GFF1053 GFF1054 - hypothetical protein, at 292,473 to 292,748 GFF1054 GFF1055 - hypothetical protein, at 292,838 to 293,125 GFF1055 GFF1056 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 293,131 to 295,707 GFF1056 Position (kb) 292 293Strain fitness (log2 ratio) -2 -1 0 1at 291.487 kb on + strand, within GFF1052at 291.487 kb on + strand, within GFF1052at 291.487 kb on + strand, within GFF1052at 291.488 kb on - strand, within GFF1052at 291.573 kb on + strand, within GFF1052at 291.574 kb on - strand, within GFF1052at 291.620 kb on + strand, within GFF1052at 291.623 kb on + strand, within GFF1052at 291.624 kb on - strand, within GFF1052at 291.632 kb on + strand, within GFF1052at 291.678 kb on - strandat 291.702 kb on + strandat 291.703 kb on - strandat 291.714 kb on - strandat 291.733 kb on - strandat 291.791 kb on + strandat 291.791 kb on + strandat 291.792 kb on - strandat 291.793 kb on + strandat 291.793 kb on + strandat 291.860 kb on + strand, within GFF1053at 291.861 kb on - strand, within GFF1053at 291.990 kb on - strand, within GFF1053at 292.130 kb on + strand, within GFF1053at 292.195 kb on + strand, within GFF1053at 292.195 kb on + strand, within GFF1053at 292.195 kb on + strand, within GFF1053at 292.196 kb on - strand, within GFF1053at 292.247 kb on + strandat 292.247 kb on + strandat 292.248 kb on - strandat 292.256 kb on - strandat 292.256 kb on - strandat 292.271 kb on - strandat 292.436 kb on + strandat 292.436 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.457 kb on - strandat 292.457 kb on - strandat 292.457 kb on - strandat 292.602 kb on + strand, within GFF1054at 292.602 kb on + strand, within GFF1054at 292.602 kb on + strand, within GFF1054at 292.652 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.734 kb on + strandat 292.746 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.762 kb on - strandat 292.818 kb on + strandat 292.833 kb on + strandat 292.834 kb on - strandat 292.908 kb on + strand, within GFF1055at 292.942 kb on + strand, within GFF1055at 292.942 kb on + strand, within GFF1055at 292.942 kb on + strand, within GFF1055at 292.943 kb on - strand, within GFF1055at 292.943 kb on - strand, within GFF1055at 292.958 kb on + strand, within GFF1055at 292.958 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.982 kb on - strand, within GFF1055at 292.982 kb on - strand, within GFF1055at 292.982 kb on - strand, within GFF1055at 293.011 kb on + strand, within GFF1055at 293.011 kb on + strand, within GFF1055at 293.011 kb on + strand, within GFF1055at 293.012 kb on - strand, within GFF1055at 293.012 kb on - strand, within GFF1055at 293.049 kb on + strand, within GFF1055at 293.049 kb on + strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.111 kb on + strandat 293.134 kb on + strandat 293.134 kb on + strandat 293.135 kb on - strandat 293.135 kb on - strandat 293.135 kb on - strandat 293.190 kb on + strandat 293.193 kb on + strandat 293.214 kb on + strandat 293.238 kb on + strandat 293.239 kb on - strandat 293.239 kb on - strandat 293.253 kb on + strandat 293.253 kb on + strandat 293.253 kb on + strandat 293.253 kb on + strandat 293.254 kb on - strandat 293.254 kb on - strandat 293.257 kb on + strandat 293.257 kb on + strandat 293.257 kb on + strandat 293.257 kb on + strandat 293.258 kb on - strandat 293.258 kb on - strandat 293.258 kb on - strandat 293.302 kb on + strandat 293.329 kb on - strandat 293.379 kb on + strandat 293.398 kb on - strand, within GFF1056at 293.406 kb on + strand, within GFF1056at 293.407 kb on - strand, within GFF1056at 293.475 kb on + strand, within GFF1056at 293.493 kb on + strand, within GFF1056at 293.503 kb on + strand, within GFF1056at 293.512 kb on - strand, within GFF1056at 293.513 kb on + strand, within GFF1056at 293.513 kb on + strand, within GFF1056at 293.547 kb on + strand, within GFF1056at 293.548 kb on - strand, within GFF1056at 293.548 kb on - strand, within GFF1056at 293.565 kb on - strand, within GFF1056at 293.565 kb on - strand, within GFF1056at 293.583 kb on - strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.607 kb on - strand, within GFF1056at 293.607 kb on - strand, within GFF1056at 293.634 kb on + strand, within GFF1056at 293.666 kb on + strand, within GFF1056at 293.667 kb on - strand, within GFF1056

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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291,487 + GFF1052 0.67 -0.4
291,487 + GFF1052 0.67 -1.1
291,487 + GFF1052 0.67 +0.1
291,488 - GFF1052 0.67 -1.2
291,573 + GFF1052 0.79 -2.1
291,574 - GFF1052 0.79 +0.5
291,620 + GFF1052 0.85 -0.8
291,623 + GFF1052 0.85 +0.3
291,624 - GFF1052 0.85 -1.7
291,632 + GFF1052 0.86 -2.2
291,678 - +0.8
291,702 + -0.3
291,703 - -0.3
291,714 - -0.9
291,733 - -2.4
291,791 + +0.2
291,791 + -0.9
291,792 - -0.9
291,793 + -1.7
291,793 + -1.0
291,860 + GFF1053 0.19 +0.5
291,861 - GFF1053 0.20 +0.4
291,990 - GFF1053 0.44 -0.1
292,130 + GFF1053 0.70 -1.2
292,195 + GFF1053 0.82 -1.0
292,195 + GFF1053 0.82 +0.3
292,195 + GFF1053 0.82 -0.6
292,196 - GFF1053 0.82 -0.9
292,247 + +0.3
292,247 + -0.9
292,248 - +0.6
292,256 - -1.3
292,256 - -1.5
292,271 - -1.0
292,436 + -0.1
292,436 + -0.3
292,456 + -0.9
292,456 + +0.3
292,456 + +0.7
292,456 + -0.9
292,456 + -0.5
292,456 + -0.5
292,456 + -1.5
292,456 + -1.8
292,457 - -0.8
292,457 - -0.9
292,457 - -0.2
292,602 + GFF1054 0.47 -0.2
292,602 + GFF1054 0.47 -0.9
292,602 + GFF1054 0.47 +0.1
292,652 + GFF1054 0.65 -1.0
292,671 + GFF1054 0.72 -0.5
292,671 + GFF1054 0.72 +0.3
292,671 + GFF1054 0.72 -0.9
292,671 + GFF1054 0.72 -0.8
292,671 + GFF1054 0.72 -0.7
292,671 + GFF1054 0.72 -0.7
292,671 + GFF1054 0.72 -0.2
292,675 + GFF1054 0.73 -0.5
292,675 + GFF1054 0.73 -0.6
292,675 + GFF1054 0.73 -0.4
292,675 + GFF1054 0.73 -0.7
292,675 + GFF1054 0.73 +0.1
292,675 + GFF1054 0.73 -1.0
292,734 + +0.3
292,746 + -0.5
292,761 + +0.3
292,761 + -0.0
292,761 + -0.5
292,761 + -1.0
292,761 + -0.7
292,761 + +0.3
292,761 + +0.6
292,762 - -0.2
292,818 + -0.6
292,833 + -1.4
292,834 - +1.1
292,908 + GFF1055 0.24 +1.1
292,942 + GFF1055 0.36 -0.2
292,942 + GFF1055 0.36 +1.1
292,942 + GFF1055 0.36 -1.4
292,943 - GFF1055 0.36 -0.9
292,943 - GFF1055 0.36 -1.5
292,958 + GFF1055 0.42 +0.9
292,958 + GFF1055 0.42 +0.2
292,960 + GFF1055 0.42 +1.5
292,960 + GFF1055 0.42 -0.3
292,960 + GFF1055 0.42 +0.8
292,960 + GFF1055 0.42 -1.4
292,960 + GFF1055 0.42 -0.9
292,960 + GFF1055 0.42 -0.5
292,960 + GFF1055 0.42 -0.4
292,961 - GFF1055 0.43 -1.7
292,961 - GFF1055 0.43 +0.3
292,961 - GFF1055 0.43 -0.1
292,961 - GFF1055 0.43 -1.2
292,979 + GFF1055 0.49 +0.1
292,979 + GFF1055 0.49 -0.1
292,979 + GFF1055 0.49 -1.3
292,979 + GFF1055 0.49 -1.2
292,979 + GFF1055 0.49 -0.2
292,979 + GFF1055 0.49 -2.1
292,979 + GFF1055 0.49 -1.1
292,980 - GFF1055 0.49 -1.7
292,980 - GFF1055 0.49 -1.2
292,980 - GFF1055 0.49 -0.7
292,980 - GFF1055 0.49 +1.1
292,980 - GFF1055 0.49 +0.2
292,980 - GFF1055 0.49 -1.2
292,980 - GFF1055 0.49 -1.1
292,981 + GFF1055 0.50 +0.5
292,981 + GFF1055 0.50 -1.1
292,981 + GFF1055 0.50 -0.9
292,981 + GFF1055 0.50 -0.9
292,981 + GFF1055 0.50 +0.1
292,981 + GFF1055 0.50 -0.8
292,982 - GFF1055 0.50 -1.8
292,982 - GFF1055 0.50 +0.3
292,982 - GFF1055 0.50 +0.1
293,011 + GFF1055 0.60 -0.9
293,011 + GFF1055 0.60 -0.5
293,011 + GFF1055 0.60 -1.7
293,012 - GFF1055 0.60 +1.4
293,012 - GFF1055 0.60 +0.1
293,049 + GFF1055 0.73 -0.1
293,049 + GFF1055 0.73 +0.1
293,050 - GFF1055 0.74 -0.7
293,050 - GFF1055 0.74 -1.7
293,050 - GFF1055 0.74 +0.3
293,050 - GFF1055 0.74 -1.2
293,111 + -1.3
293,134 + -0.2
293,134 + -0.7
293,135 - -0.9
293,135 - +0.9
293,135 - -0.7
293,190 + -0.9
293,193 + -1.5
293,214 + +0.3
293,238 + -1.7
293,239 - -0.7
293,239 - -0.9
293,253 + -0.9
293,253 + -0.5
293,253 + -1.7
293,253 + -1.2
293,254 - -0.9
293,254 - -2.7
293,257 + -1.2
293,257 + -1.2
293,257 + -1.2
293,257 + -0.9
293,258 - -1.2
293,258 - -1.5
293,258 - -1.1
293,302 + +1.4
293,329 - -1.7
293,379 + -1.7
293,398 - GFF1056 0.10 -0.9
293,406 + GFF1056 0.11 -0.5
293,407 - GFF1056 0.11 -1.2
293,475 + GFF1056 0.13 -0.9
293,493 + GFF1056 0.14 -0.9
293,503 + GFF1056 0.14 -0.9
293,512 - GFF1056 0.15 -1.2
293,513 + GFF1056 0.15 -1.5
293,513 + GFF1056 0.15 -0.9
293,547 + GFF1056 0.16 -1.5
293,548 - GFF1056 0.16 -1.5
293,548 - GFF1056 0.16 -1.2
293,565 - GFF1056 0.17 -1.1
293,565 - GFF1056 0.17 -1.7
293,583 - GFF1056 0.18 -1.2
293,606 + GFF1056 0.18 -0.9
293,606 + GFF1056 0.18 -1.2
293,606 + GFF1056 0.18 -0.2
293,606 + GFF1056 0.18 -0.9
293,607 - GFF1056 0.18 -0.7
293,607 - GFF1056 0.18 -2.2
293,634 + GFF1056 0.20 -1.7
293,666 + GFF1056 0.21 -2.1
293,667 - GFF1056 0.21 +0.1

Or see this region's nucleotide sequence