Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06773

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06771 and MPMX19_06772 are separated by 26 nucleotidesMPMX19_06772 and MPMX19_06773 are separated by 147 nucleotidesMPMX19_06773 and MPMX19_06774 overlap by 4 nucleotidesMPMX19_06774 and MPMX19_06775 are separated by 32 nucleotides MPMX19_06771: MPMX19_06771 - hypothetical protein, at 37,611 to 38,417 _06771 MPMX19_06772: MPMX19_06772 - hypothetical protein, at 38,444 to 39,004 _06772 MPMX19_06773: MPMX19_06773 - 2-(R)-hydroxypropyl-CoM dehydrogenase, at 39,152 to 39,940 _06773 MPMX19_06774: MPMX19_06774 - hypothetical protein, at 39,937 to 40,635 _06774 MPMX19_06775: MPMX19_06775 - Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase, at 40,668 to 41,561 _06775 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.639 kb on + strand, within MPMX19_06772at 38.639 kb on + strand, within MPMX19_06772at 38.639 kb on + strand, within MPMX19_06772at 38.639 kb on + strand, within MPMX19_06772at 38.640 kb on - strand, within MPMX19_06772at 38.645 kb on + strand, within MPMX19_06772at 38.645 kb on + strand, within MPMX19_06772at 38.645 kb on + strand, within MPMX19_06772at 38.645 kb on + strand, within MPMX19_06772at 38.645 kb on + strand, within MPMX19_06772at 38.645 kb on + strand, within MPMX19_06772at 38.645 kb on + strand, within MPMX19_06772at 38.646 kb on - strand, within MPMX19_06772at 38.646 kb on - strand, within MPMX19_06772at 38.646 kb on - strand, within MPMX19_06772at 38.646 kb on - strand, within MPMX19_06772at 38.646 kb on - strand, within MPMX19_06772at 38.646 kb on - strand, within MPMX19_06772at 38.648 kb on + strand, within MPMX19_06772at 38.649 kb on - strand, within MPMX19_06772at 38.741 kb on + strand, within MPMX19_06772at 38.741 kb on + strand, within MPMX19_06772at 38.741 kb on + strand, within MPMX19_06772at 38.742 kb on - strand, within MPMX19_06772at 38.768 kb on + strand, within MPMX19_06772at 38.768 kb on + strand, within MPMX19_06772at 38.768 kb on + strand, within MPMX19_06772at 38.768 kb on + strand, within MPMX19_06772at 38.768 kb on + strand, within MPMX19_06772at 38.768 kb on + strand, within MPMX19_06772at 38.769 kb on - strand, within MPMX19_06772at 38.769 kb on - strand, within MPMX19_06772at 38.769 kb on - strand, within MPMX19_06772at 38.769 kb on - strand, within MPMX19_06772at 38.769 kb on - strand, within MPMX19_06772at 38.936 kb on + strand, within MPMX19_06772at 38.936 kb on + strand, within MPMX19_06772at 38.936 kb on + strand, within MPMX19_06772at 38.936 kb on + strand, within MPMX19_06772at 38.936 kb on + strand, within MPMX19_06772at 38.936 kb on + strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.954 kb on + strandat 38.954 kb on + strandat 38.954 kb on + strandat 38.954 kb on + strandat 38.955 kb on - strandat 38.955 kb on - strandat 39.046 kb on + strandat 39.047 kb on - strandat 39.104 kb on - strandat 39.719 kb on + strand, within MPMX19_06773at 39.719 kb on + strand, within MPMX19_06773at 39.719 kb on + strand, within MPMX19_06773at 39.719 kb on + strand, within MPMX19_06773at 39.720 kb on - strand, within MPMX19_06773at 39.833 kb on + strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 40.010 kb on + strand, within MPMX19_06774at 40.010 kb on + strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.114 kb on + strand, within MPMX19_06774at 40.114 kb on + strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.150 kb on + strand, within MPMX19_06774at 40.150 kb on + strand, within MPMX19_06774at 40.150 kb on + strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.423 kb on + strand, within MPMX19_06774at 40.423 kb on + strand, within MPMX19_06774at 40.423 kb on + strand, within MPMX19_06774at 40.881 kb on + strand, within MPMX19_06775at 40.881 kb on + strand, within MPMX19_06775at 40.882 kb on - strand, within MPMX19_06775

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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38,169 + MPMX19_06771 0.69 -0.7
38,169 + MPMX19_06771 0.69 -0.4
38,169 + MPMX19_06771 0.69 +0.2
38,169 + MPMX19_06771 0.69 -0.6
38,169 + MPMX19_06771 0.69 -0.4
38,169 + MPMX19_06771 0.69 -0.1
38,169 + MPMX19_06771 0.69 +0.0
38,170 - MPMX19_06771 0.69 -0.1
38,170 - MPMX19_06771 0.69 -0.4
38,170 - MPMX19_06771 0.69 +0.5
38,170 - MPMX19_06771 0.69 +0.3
38,170 - MPMX19_06771 0.69 +0.3
38,639 + MPMX19_06772 0.35 -1.2
38,639 + MPMX19_06772 0.35 -0.1
38,639 + MPMX19_06772 0.35 -0.2
38,639 + MPMX19_06772 0.35 +0.1
38,640 - MPMX19_06772 0.35 -1.1
38,645 + MPMX19_06772 0.36 +0.9
38,645 + MPMX19_06772 0.36 +1.5
38,645 + MPMX19_06772 0.36 -0.0
38,645 + MPMX19_06772 0.36 -0.5
38,645 + MPMX19_06772 0.36 +0.7
38,645 + MPMX19_06772 0.36 -0.3
38,645 + MPMX19_06772 0.36 +1.5
38,646 - MPMX19_06772 0.36 -0.8
38,646 - MPMX19_06772 0.36 +0.1
38,646 - MPMX19_06772 0.36 +0.0
38,646 - MPMX19_06772 0.36 -0.8
38,646 - MPMX19_06772 0.36 -0.6
38,646 - MPMX19_06772 0.36 -0.5
38,648 + MPMX19_06772 0.36 -0.1
38,649 - MPMX19_06772 0.37 +0.2
38,741 + MPMX19_06772 0.53 -0.1
38,741 + MPMX19_06772 0.53 -0.7
38,741 + MPMX19_06772 0.53 -1.1
38,742 - MPMX19_06772 0.53 +1.0
38,768 + MPMX19_06772 0.58 +1.0
38,768 + MPMX19_06772 0.58 +0.4
38,768 + MPMX19_06772 0.58 -0.5
38,768 + MPMX19_06772 0.58 +0.1
38,768 + MPMX19_06772 0.58 -0.1
38,768 + MPMX19_06772 0.58 -1.0
38,769 - MPMX19_06772 0.58 -1.0
38,769 - MPMX19_06772 0.58 -0.9
38,769 - MPMX19_06772 0.58 +0.5
38,769 - MPMX19_06772 0.58 +0.2
38,769 - MPMX19_06772 0.58 +0.2
38,936 + MPMX19_06772 0.88 +1.2
38,936 + MPMX19_06772 0.88 -0.6
38,936 + MPMX19_06772 0.88 -0.4
38,936 + MPMX19_06772 0.88 +0.6
38,936 + MPMX19_06772 0.88 -1.0
38,936 + MPMX19_06772 0.88 +0.0
38,937 - MPMX19_06772 0.88 -0.9
38,937 - MPMX19_06772 0.88 -0.4
38,937 - MPMX19_06772 0.88 -1.1
38,937 - MPMX19_06772 0.88 +0.1
38,937 - MPMX19_06772 0.88 +0.8
38,937 - MPMX19_06772 0.88 +0.2
38,937 - MPMX19_06772 0.88 -1.8
38,954 + +0.2
38,954 + -0.7
38,954 + -0.4
38,954 + +0.2
38,955 - -0.7
38,955 - -0.4
39,046 + +0.1
39,047 - +0.2
39,104 - -0.1
39,719 + MPMX19_06773 0.72 +0.4
39,719 + MPMX19_06773 0.72 +0.3
39,719 + MPMX19_06773 0.72 -0.0
39,719 + MPMX19_06773 0.72 -0.7
39,720 - MPMX19_06773 0.72 +2.1
39,833 + MPMX19_06773 0.86 +0.2
39,834 - MPMX19_06773 0.86 +0.7
39,834 - MPMX19_06773 0.86 +1.2
39,834 - MPMX19_06773 0.86 +0.5
39,834 - MPMX19_06773 0.86 +2.2
39,834 - MPMX19_06773 0.86 -0.8
40,010 + MPMX19_06774 0.10 +0.3
40,010 + MPMX19_06774 0.10 -1.7
40,011 - MPMX19_06774 0.11 -0.5
40,011 - MPMX19_06774 0.11 +0.2
40,011 - MPMX19_06774 0.11 +0.4
40,011 - MPMX19_06774 0.11 -1.2
40,114 + MPMX19_06774 0.25 -1.0
40,114 + MPMX19_06774 0.25 +0.3
40,115 - MPMX19_06774 0.25 +0.1
40,115 - MPMX19_06774 0.25 -1.3
40,115 - MPMX19_06774 0.25 +0.2
40,115 - MPMX19_06774 0.25 +0.9
40,150 + MPMX19_06774 0.30 -0.6
40,150 + MPMX19_06774 0.30 +0.7
40,150 + MPMX19_06774 0.30 +0.3
40,151 - MPMX19_06774 0.31 +0.7
40,151 - MPMX19_06774 0.31 -0.1
40,151 - MPMX19_06774 0.31 +0.5
40,151 - MPMX19_06774 0.31 -0.5
40,423 + MPMX19_06774 0.70 +0.3
40,423 + MPMX19_06774 0.70 -0.7
40,423 + MPMX19_06774 0.70 +0.7
40,881 + MPMX19_06775 0.24 -0.5
40,881 + MPMX19_06775 0.24 -0.4
40,882 - MPMX19_06775 0.24 -0.6

Or see this region's nucleotide sequence