Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06473

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06472 and MPMX19_06473 are separated by 63 nucleotidesMPMX19_06473 and MPMX19_06474 are separated by 26 nucleotidesMPMX19_06474 and MPMX19_06475 are separated by 6 nucleotides MPMX19_06472: MPMX19_06472 - Alkanesulfonate monooxygenase, at 255,819 to 256,943 _06472 MPMX19_06473: MPMX19_06473 - Putative aliphatic sulfonates-binding protein, at 257,007 to 258,020 _06473 MPMX19_06474: MPMX19_06474 - Vitamin B12 import ATP-binding protein BtuD, at 258,047 to 258,910 _06474 MPMX19_06475: MPMX19_06475 - Putative aliphatic sulfonates transport permease protein SsuC, at 258,917 to 259,744 _06475 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.174 kb on + strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.182 kb on - strand, within MPMX19_06472at 256.230 kb on + strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.418 kb on - strand, within MPMX19_06472at 256.534 kb on + strand, within MPMX19_06472at 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.962 kb on + strandat 256.962 kb on + strandat 256.962 kb on + strandat 256.962 kb on + strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 257.001 kb on + strandat 257.103 kb on - strandat 257.103 kb on - strandat 257.348 kb on - strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.578 kb on + strand, within MPMX19_06473at 257.579 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.670 kb on + strand, within MPMX19_06473at 257.670 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 258.009 kb on - strandat 258.088 kb on - strandat 258.648 kb on - strand, within MPMX19_06474

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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256,174 + MPMX19_06472 0.32 -0.0
256,175 - MPMX19_06472 0.32 -0.7
256,175 - MPMX19_06472 0.32 +0.6
256,175 - MPMX19_06472 0.32 -2.0
256,182 - MPMX19_06472 0.32 +0.0
256,230 + MPMX19_06472 0.37 -0.6
256,231 - MPMX19_06472 0.37 -1.2
256,231 - MPMX19_06472 0.37 -0.2
256,231 - MPMX19_06472 0.37 +0.2
256,336 + MPMX19_06472 0.46 -0.7
256,336 + MPMX19_06472 0.46 +0.5
256,336 + MPMX19_06472 0.46 -0.1
256,336 + MPMX19_06472 0.46 -0.6
256,336 + MPMX19_06472 0.46 -0.0
256,336 + MPMX19_06472 0.46 +0.3
256,336 + MPMX19_06472 0.46 -0.9
256,337 - MPMX19_06472 0.46 -1.0
256,337 - MPMX19_06472 0.46 -0.7
256,337 - MPMX19_06472 0.46 +0.3
256,337 - MPMX19_06472 0.46 -0.4
256,337 - MPMX19_06472 0.46 -1.0
256,418 - MPMX19_06472 0.53 -0.3
256,534 + MPMX19_06472 0.64 -0.3
256,958 + -1.6
256,958 + -0.1
256,958 + -0.3
256,958 + +0.9
256,958 + -0.3
256,958 + +0.5
256,958 + +0.2
256,958 + -0.5
256,958 + -0.1
256,958 + -0.8
256,959 - -1.2
256,959 - +0.1
256,959 - -1.7
256,959 - -0.1
256,959 - +0.4
256,959 - -0.6
256,959 - -0.2
256,962 + +0.5
256,962 + -0.4
256,962 + -0.5
256,962 + -1.1
256,963 - -0.8
256,963 - -0.2
256,963 - +0.4
256,963 - -0.7
256,963 - -0.7
256,963 - -2.0
257,001 + -0.5
257,103 - -0.5
257,103 - +0.2
257,348 - MPMX19_06473 0.34 +0.7
257,353 + MPMX19_06473 0.34 +0.1
257,353 + MPMX19_06473 0.34 +0.6
257,353 + MPMX19_06473 0.34 -1.6
257,353 + MPMX19_06473 0.34 -1.0
257,353 + MPMX19_06473 0.34 -2.1
257,354 - MPMX19_06473 0.34 +1.3
257,354 - MPMX19_06473 0.34 +0.8
257,354 - MPMX19_06473 0.34 +0.8
257,354 - MPMX19_06473 0.34 -1.8
257,354 - MPMX19_06473 0.34 -0.4
257,354 - MPMX19_06473 0.34 +0.2
257,354 - MPMX19_06473 0.34 -1.3
257,354 - MPMX19_06473 0.34 -0.4
257,354 - MPMX19_06473 0.34 +2.1
257,432 - MPMX19_06473 0.42 +0.4
257,432 - MPMX19_06473 0.42 +0.5
257,432 - MPMX19_06473 0.42 +0.1
257,432 - MPMX19_06473 0.42 +0.8
257,432 - MPMX19_06473 0.42 -1.4
257,552 - MPMX19_06473 0.54 +1.6
257,552 - MPMX19_06473 0.54 +0.5
257,552 - MPMX19_06473 0.54 +0.5
257,552 - MPMX19_06473 0.54 +0.4
257,552 - MPMX19_06473 0.54 +0.8
257,552 - MPMX19_06473 0.54 +0.5
257,552 - MPMX19_06473 0.54 -1.8
257,552 - MPMX19_06473 0.54 -0.4
257,552 - MPMX19_06473 0.54 -0.9
257,552 - MPMX19_06473 0.54 +1.6
257,552 - MPMX19_06473 0.54 -1.8
257,555 - MPMX19_06473 0.54 -0.2
257,555 - MPMX19_06473 0.54 -0.7
257,555 - MPMX19_06473 0.54 +0.6
257,555 - MPMX19_06473 0.54 -0.5
257,555 - MPMX19_06473 0.54 +0.5
257,555 - MPMX19_06473 0.54 -0.4
257,578 + MPMX19_06473 0.56 -0.4
257,579 - MPMX19_06473 0.56 +0.6
257,656 - MPMX19_06473 0.64 -0.5
257,656 - MPMX19_06473 0.64 +0.3
257,656 - MPMX19_06473 0.64 +1.0
257,670 + MPMX19_06473 0.65 +0.2
257,670 + MPMX19_06473 0.65 -1.2
257,866 + MPMX19_06473 0.85 -0.7
257,866 + MPMX19_06473 0.85 +1.1
257,866 + MPMX19_06473 0.85 -0.1
257,866 + MPMX19_06473 0.85 +1.3
257,866 + MPMX19_06473 0.85 -0.1
258,009 - -0.1
258,088 - -0.2
258,648 - MPMX19_06474 0.70 -2.0

Or see this region's nucleotide sequence