Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06265 and MPMX19_06266 are separated by 130 nucleotides MPMX19_06266 and MPMX19_06267 are separated by 433 nucleotides MPMX19_06267 and MPMX19_06268 are separated by 92 nucleotides MPMX19_06268 and MPMX19_06269 are separated by 6 nucleotides
MPMX19_06265: MPMX19_06265 - hypothetical protein, at 16,571 to 17,194
_06265
MPMX19_06266: MPMX19_06266 - hypothetical protein, at 17,325 to 17,687
_06266
MPMX19_06267: MPMX19_06267 - hypothetical protein, at 18,121 to 18,384
_06267
MPMX19_06268: MPMX19_06268 - hypothetical protein, at 18,477 to 19,112
_06268
MPMX19_06269: MPMX19_06269 - IS110 family transposase ISHne4, at 19,119 to 19,652
_06269
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.412 kb on + strand, within MPMX19_06266 at 17.413 kb on - strand, within MPMX19_06266 at 17.413 kb on - strand, within MPMX19_06266 at 17.567 kb on + strand, within MPMX19_06266 at 17.921 kb on + strand at 17.922 kb on - strand at 17.922 kb on - strand at 17.995 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.058 kb on - strand at 18.123 kb on - strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.139 kb on - strand at 18.139 kb on - strand at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.268 kb on + strand, within MPMX19_06267 at 18.397 kb on - strand at 18.397 kb on - strand at 18.470 kb on + strand at 18.471 kb on - strand at 18.527 kb on + strand at 18.527 kb on + strand at 18.528 kb on - strand at 18.528 kb on - strand at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.890 kb on - strand, within MPMX19_06268 at 19.116 kb on + strand at 19.141 kb on + strand at 19.215 kb on - strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.316 kb on + strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.380 kb on + strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 17,412 + MPMX19_06266 0.24 +0.8 17,413 - MPMX19_06266 0.24 -0.7 17,413 - MPMX19_06266 0.24 -1.8 17,567 + MPMX19_06266 0.67 -0.3 17,921 + +0.5 17,922 - -0.4 17,922 - -0.2 17,995 + +1.1 18,003 + -0.9 18,003 + +0.8 18,003 + -1.0 18,003 + +0.6 18,004 - -0.2 18,004 - -2.4 18,004 - +0.2 18,004 - -0.4 18,004 - -0.2 18,004 - -0.5 18,041 + -0.4 18,041 + -0.1 18,041 + +0.1 18,041 + +0.4 18,041 + -1.0 18,041 + +0.3 18,042 - -1.0 18,042 - -0.1 18,042 - -0.3 18,042 - -1.7 18,042 - +0.0 18,058 - +0.4 18,123 - +1.3 18,132 + -0.3 18,132 + -0.3 18,132 + +1.3 18,133 - -0.4 18,133 - -0.3 18,133 - -0.6 18,133 - +0.2 18,133 - +0.0 18,139 - -1.1 18,139 - -2.8 18,218 + MPMX19_06267 0.37 -2.7 18,218 + MPMX19_06267 0.37 +0.4 18,218 + MPMX19_06267 0.37 +0.8 18,218 + MPMX19_06267 0.37 -0.7 18,219 - MPMX19_06267 0.37 +0.2 18,219 - MPMX19_06267 0.37 -1.0 18,219 - MPMX19_06267 0.37 -1.3 18,219 - MPMX19_06267 0.37 -1.1 18,268 + MPMX19_06267 0.56 +0.3 18,397 - +0.6 18,397 - +0.6 18,470 + +1.3 18,471 - -1.4 18,527 + -0.2 18,527 + -0.5 18,528 - -0.0 18,528 - +1.0 18,560 + MPMX19_06268 0.13 -0.6 18,560 + MPMX19_06268 0.13 -0.5 18,560 + MPMX19_06268 0.13 +0.7 18,560 + MPMX19_06268 0.13 -0.6 18,560 + MPMX19_06268 0.13 -1.0 18,560 + MPMX19_06268 0.13 -1.1 18,560 + MPMX19_06268 0.13 +1.0 18,560 + MPMX19_06268 0.13 +0.4 18,560 + MPMX19_06268 0.13 -0.0 18,560 + MPMX19_06268 0.13 -1.0 18,561 - MPMX19_06268 0.13 +0.5 18,561 - MPMX19_06268 0.13 -0.1 18,561 - MPMX19_06268 0.13 +0.0 18,561 - MPMX19_06268 0.13 +1.0 18,727 + MPMX19_06268 0.39 -0.8 18,727 + MPMX19_06268 0.39 +1.0 18,727 + MPMX19_06268 0.39 -0.1 18,727 + MPMX19_06268 0.39 +0.1 18,727 + MPMX19_06268 0.39 +0.1 18,727 + MPMX19_06268 0.39 -0.7 18,728 - MPMX19_06268 0.39 -0.6 18,728 - MPMX19_06268 0.39 -0.7 18,728 - MPMX19_06268 0.39 -1.6 18,728 - MPMX19_06268 0.39 -0.9 18,728 - MPMX19_06268 0.39 +1.9 18,728 - MPMX19_06268 0.39 +1.0 18,763 + MPMX19_06268 0.45 -1.0 18,763 + MPMX19_06268 0.45 +0.3 18,763 + MPMX19_06268 0.45 -1.6 18,764 - MPMX19_06268 0.45 +0.1 18,764 - MPMX19_06268 0.45 -0.5 18,886 + MPMX19_06268 0.64 -0.1 18,886 + MPMX19_06268 0.64 -0.3 18,887 - MPMX19_06268 0.64 -0.6 18,887 - MPMX19_06268 0.64 -0.2 18,889 + MPMX19_06268 0.65 +0.6 18,889 + MPMX19_06268 0.65 -0.4 18,889 + MPMX19_06268 0.65 +0.6 18,890 - MPMX19_06268 0.65 +0.4 19,116 + -1.1 19,141 + -1.7 19,215 - MPMX19_06269 0.18 -0.9 19,297 + MPMX19_06269 0.33 +1.0 19,297 + MPMX19_06269 0.33 -1.2 19,297 + MPMX19_06269 0.33 -0.3 19,297 + MPMX19_06269 0.33 +0.1 19,297 + MPMX19_06269 0.33 +0.9 19,298 - MPMX19_06269 0.34 +0.6 19,298 - MPMX19_06269 0.34 -0.7 19,298 - MPMX19_06269 0.34 -0.6 19,298 - MPMX19_06269 0.34 -0.7 19,298 - MPMX19_06269 0.34 -1.4 19,298 - MPMX19_06269 0.34 +0.8 19,316 + MPMX19_06269 0.37 +0.4 19,317 - MPMX19_06269 0.37 +0.3 19,317 - MPMX19_06269 0.37 +0.2 19,380 + MPMX19_06269 0.49 +0.2 19,381 - MPMX19_06269 0.49 -0.0 19,381 - MPMX19_06269 0.49 +1.6 19,381 - MPMX19_06269 0.49 -1.1
Or see this region's nucleotide sequence