Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06122 and MPMX19_06123 are separated by 67 nucleotides MPMX19_06123 and MPMX19_06124 are separated by 324 nucleotides
MPMX19_06122: MPMX19_06122 - Acetylornithine deacetylase, at 307,389 to 308,717
_06122
MPMX19_06123: MPMX19_06123 - hypothetical protein, at 308,785 to 309,483
_06123
MPMX19_06124: MPMX19_06124 - Chloramphenicol acetyltransferase, at 309,808 to 310,443
_06124
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.938 kb on + strand, within MPMX19_06122 at 307.938 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.302 kb on - strand, within MPMX19_06122 at 308.302 kb on - strand, within MPMX19_06122 at 308.388 kb on + strand, within MPMX19_06122 at 308.389 kb on - strand, within MPMX19_06122 at 308.389 kb on - strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.571 kb on + strand, within MPMX19_06122 at 308.572 kb on - strand, within MPMX19_06122 at 308.786 kb on + strand at 308.786 kb on + strand at 308.786 kb on + strand at 308.787 kb on - strand at 308.787 kb on - strand at 308.787 kb on - strand at 308.787 kb on - strand at 308.849 kb on + strand at 308.849 kb on + strand at 309.272 kb on + strand, within MPMX19_06123 at 309.275 kb on + strand, within MPMX19_06123 at 309.275 kb on + strand, within MPMX19_06123 at 309.634 kb on + strand at 309.634 kb on + strand at 309.634 kb on + strand at 309.634 kb on + strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.638 kb on + strand at 309.638 kb on + strand at 309.638 kb on + strand at 309.638 kb on + strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.775 kb on + strand at 309.775 kb on + strand at 309.775 kb on + strand at 309.776 kb on - strand at 309.889 kb on + strand, within MPMX19_06124 at 309.889 kb on + strand, within MPMX19_06124 at 309.889 kb on + strand, within MPMX19_06124 at 309.889 kb on + strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 310.117 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 307,938 + MPMX19_06122 0.41 -2.1 307,938 + MPMX19_06122 0.41 -0.2 308,284 + MPMX19_06122 0.67 +0.4 308,284 + MPMX19_06122 0.67 +0.1 308,284 + MPMX19_06122 0.67 +0.7 308,284 + MPMX19_06122 0.67 -1.2 308,284 + MPMX19_06122 0.67 +0.4 308,284 + MPMX19_06122 0.67 -2.4 308,284 + MPMX19_06122 0.67 +0.8 308,285 - MPMX19_06122 0.67 -0.4 308,285 - MPMX19_06122 0.67 -1.7 308,285 - MPMX19_06122 0.67 +0.5 308,285 - MPMX19_06122 0.67 -0.2 308,285 - MPMX19_06122 0.67 -1.2 308,285 - MPMX19_06122 0.67 +1.0 308,302 - MPMX19_06122 0.69 -1.9 308,302 - MPMX19_06122 0.69 -0.5 308,388 + MPMX19_06122 0.75 -1.0 308,389 - MPMX19_06122 0.75 -0.7 308,389 - MPMX19_06122 0.75 -0.6 308,520 + MPMX19_06122 0.85 -0.4 308,520 + MPMX19_06122 0.85 -1.4 308,520 + MPMX19_06122 0.85 +1.4 308,520 + MPMX19_06122 0.85 +0.3 308,520 + MPMX19_06122 0.85 -0.2 308,520 + MPMX19_06122 0.85 -0.3 308,520 + MPMX19_06122 0.85 -0.3 308,520 + MPMX19_06122 0.85 -0.6 308,520 + MPMX19_06122 0.85 -1.0 308,520 + MPMX19_06122 0.85 -1.2 308,520 + MPMX19_06122 0.85 -1.5 308,521 - MPMX19_06122 0.85 -1.3 308,521 - MPMX19_06122 0.85 -0.6 308,521 - MPMX19_06122 0.85 -2.5 308,521 - MPMX19_06122 0.85 -0.7 308,521 - MPMX19_06122 0.85 -1.2 308,521 - MPMX19_06122 0.85 +0.3 308,521 - MPMX19_06122 0.85 -1.4 308,521 - MPMX19_06122 0.85 +0.4 308,521 - MPMX19_06122 0.85 -1.9 308,521 - MPMX19_06122 0.85 -0.9 308,521 - MPMX19_06122 0.85 -0.1 308,521 - MPMX19_06122 0.85 +0.6 308,521 - MPMX19_06122 0.85 -0.7 308,521 - MPMX19_06122 0.85 -0.2 308,571 + MPMX19_06122 0.89 +0.3 308,572 - MPMX19_06122 0.89 -0.2 308,786 + -0.4 308,786 + +0.4 308,786 + -1.3 308,787 - -1.0 308,787 - -0.1 308,787 - -0.3 308,787 - -1.3 308,849 + +0.2 308,849 + -0.5 309,272 + MPMX19_06123 0.70 -0.3 309,275 + MPMX19_06123 0.70 -0.2 309,275 + MPMX19_06123 0.70 -1.6 309,634 + -0.2 309,634 + -0.7 309,634 + -0.8 309,634 + +0.1 309,635 - -0.3 309,635 - -0.8 309,635 - -1.0 309,635 - -0.2 309,635 - -1.2 309,635 - -0.2 309,638 + -0.6 309,638 + -1.4 309,638 + -0.3 309,638 + +2.2 309,639 - -0.4 309,639 - +0.2 309,639 - -1.3 309,639 - -0.5 309,639 - -0.0 309,665 + -0.2 309,665 + +0.4 309,665 + -0.0 309,665 + -0.6 309,665 + -1.6 309,665 + +0.4 309,665 + -0.3 309,666 - -0.8 309,666 - -1.0 309,666 - -0.4 309,666 - -1.0 309,666 - -0.5 309,666 - -0.5 309,666 - -0.3 309,666 - -0.4 309,775 + +0.8 309,775 + -0.6 309,775 + +0.2 309,776 - -0.0 309,889 + MPMX19_06124 0.13 +0.5 309,889 + MPMX19_06124 0.13 -0.2 309,889 + MPMX19_06124 0.13 -0.2 309,889 + MPMX19_06124 0.13 -0.6 309,890 - MPMX19_06124 0.13 -1.6 309,890 - MPMX19_06124 0.13 +0.1 309,890 - MPMX19_06124 0.13 +0.8 309,890 - MPMX19_06124 0.13 -0.9 309,895 + MPMX19_06124 0.14 -1.2 309,895 + MPMX19_06124 0.14 -1.7 309,895 + MPMX19_06124 0.14 -0.3 309,895 + MPMX19_06124 0.14 -1.4 309,895 + MPMX19_06124 0.14 +0.4 309,896 - MPMX19_06124 0.14 -0.7 309,896 - MPMX19_06124 0.14 -0.5 309,896 - MPMX19_06124 0.14 -0.2 309,896 - MPMX19_06124 0.14 +0.3 309,896 - MPMX19_06124 0.14 -2.1 309,896 - MPMX19_06124 0.14 -2.4 309,896 - MPMX19_06124 0.14 -0.4 309,896 - MPMX19_06124 0.14 -1.1 309,898 + MPMX19_06124 0.14 +0.6 309,898 + MPMX19_06124 0.14 -0.2 309,898 + MPMX19_06124 0.14 -0.4 309,898 + MPMX19_06124 0.14 -0.7 309,899 - MPMX19_06124 0.14 -1.0 309,899 - MPMX19_06124 0.14 -0.1 309,899 - MPMX19_06124 0.14 +0.4 309,899 - MPMX19_06124 0.14 +0.9 309,910 + MPMX19_06124 0.16 -0.3 309,910 + MPMX19_06124 0.16 +0.4 309,910 + MPMX19_06124 0.16 -2.0 309,910 + MPMX19_06124 0.16 -0.0 309,910 + MPMX19_06124 0.16 -1.7 309,910 + MPMX19_06124 0.16 -1.0 309,910 + MPMX19_06124 0.16 -1.0 309,911 - MPMX19_06124 0.16 -1.4 309,911 - MPMX19_06124 0.16 +0.8 309,911 - MPMX19_06124 0.16 +0.1 309,911 - MPMX19_06124 0.16 +1.1 309,911 - MPMX19_06124 0.16 -1.1 309,911 - MPMX19_06124 0.16 +0.6 309,911 - MPMX19_06124 0.16 +0.1 309,911 - MPMX19_06124 0.16 -0.6 309,911 - MPMX19_06124 0.16 -1.4 310,117 + MPMX19_06124 0.49 -0.6 310,252 + MPMX19_06124 0.70 -0.0 310,252 + MPMX19_06124 0.70 +0.0 310,252 + MPMX19_06124 0.70 +0.2 310,252 + MPMX19_06124 0.70 -0.7 310,252 + MPMX19_06124 0.70 -0.2 310,252 + MPMX19_06124 0.70 -2.5 310,253 - MPMX19_06124 0.70 +1.2 310,253 - MPMX19_06124 0.70 +0.6 310,253 - MPMX19_06124 0.70 +0.1 310,253 - MPMX19_06124 0.70 -0.5
Or see this region's nucleotide sequence