Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06075 and MPMX19_06076 overlap by 1 nucleotides MPMX19_06076 and MPMX19_06077 are separated by 35 nucleotides
MPMX19_06075: MPMX19_06075 - HTH-type transcriptional regulator HexR, at 244,362 to 245,288
_06075
MPMX19_06076: MPMX19_06076 - KHG/KDPG aldolase, at 245,288 to 245,941
_06076
MPMX19_06077: MPMX19_06077 - Sensor histidine kinase RcsC, at 245,977 to 249,438
_06077
Position (kb) 245
246 Strain fitness (log2 ratio) -2
-1
0
1 at 244.317 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.290 kb on + strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.291 kb on - strand at 246.479 kb on + strand, within MPMX19_06077 at 246.479 kb on + strand, within MPMX19_06077 at 246.479 kb on + strand, within MPMX19_06077 at 246.480 kb on - strand, within MPMX19_06077 at 246.480 kb on - strand, within MPMX19_06077
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 244,317 + -0.2 246,290 + -0.4 246,290 + -0.2 246,290 + +0.4 246,290 + -0.4 246,290 + -0.2 246,290 + -1.0 246,290 + -0.9 246,290 + -0.0 246,290 + -0.6 246,290 + -1.7 246,290 + +0.9 246,290 + -0.1 246,290 + -1.4 246,291 - -1.0 246,291 - +0.1 246,291 - -0.9 246,291 - -1.9 246,291 - -0.5 246,291 - -1.0 246,291 - -1.0 246,291 - -1.1 246,291 - -0.7 246,479 + MPMX19_06077 0.15 -0.5 246,479 + MPMX19_06077 0.15 +0.2 246,479 + MPMX19_06077 0.15 -1.6 246,480 - MPMX19_06077 0.15 -0.4 246,480 - MPMX19_06077 0.15 -1.0
Or see this region's nucleotide sequence