Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05463 and MPMX19_05464 are separated by 375 nucleotides
MPMX19_05463: MPMX19_05463 - hypothetical protein, at 156,653 to 157,528
_05463
MPMX19_05464: MPMX19_05464 - hypothetical protein, at 157,904 to 158,566
_05464
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.909 kb on + strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.910 kb on - strand, within MPMX19_05463 at 156.912 kb on + strand, within MPMX19_05463 at 156.912 kb on + strand, within MPMX19_05463 at 156.912 kb on + strand, within MPMX19_05463 at 156.912 kb on + strand, within MPMX19_05463 at 156.912 kb on + strand, within MPMX19_05463 at 156.913 kb on - strand, within MPMX19_05463 at 156.913 kb on - strand, within MPMX19_05463 at 156.924 kb on + strand, within MPMX19_05463 at 156.925 kb on - strand, within MPMX19_05463 at 156.925 kb on - strand, within MPMX19_05463 at 156.925 kb on - strand, within MPMX19_05463 at 157.258 kb on + strand, within MPMX19_05463 at 157.258 kb on + strand, within MPMX19_05463 at 157.258 kb on + strand, within MPMX19_05463 at 157.258 kb on + strand, within MPMX19_05463 at 157.259 kb on - strand, within MPMX19_05463 at 157.259 kb on - strand, within MPMX19_05463 at 157.259 kb on - strand, within MPMX19_05463 at 157.259 kb on - strand, within MPMX19_05463 at 157.259 kb on - strand, within MPMX19_05463 at 157.259 kb on - strand, within MPMX19_05463 at 157.259 kb on - strand, within MPMX19_05463 at 157.322 kb on - strand, within MPMX19_05463 at 157.541 kb on + strand at 157.563 kb on - strand at 157.618 kb on + strand at 157.618 kb on + strand at 157.618 kb on + strand at 157.618 kb on + strand at 157.618 kb on + strand at 157.618 kb on + strand at 157.619 kb on - strand at 157.619 kb on - strand at 157.619 kb on - strand at 157.631 kb on + strand at 157.632 kb on - strand at 157.632 kb on - strand at 157.632 kb on - strand at 157.632 kb on - strand at 157.632 kb on - strand at 157.632 kb on - strand at 157.639 kb on + strand at 157.651 kb on + strand at 157.651 kb on + strand at 157.652 kb on - strand at 157.736 kb on + strand at 157.736 kb on + strand at 157.736 kb on + strand at 157.736 kb on + strand at 157.736 kb on + strand at 157.736 kb on + strand at 157.737 kb on - strand at 157.737 kb on - strand at 157.737 kb on - strand at 157.737 kb on - strand at 157.737 kb on - strand at 157.737 kb on - strand at 157.947 kb on + strand at 157.947 kb on + strand at 157.948 kb on - strand at 157.948 kb on - strand at 157.948 kb on - strand at 157.948 kb on - strand at 158.134 kb on - strand, within MPMX19_05464 at 158.178 kb on + strand, within MPMX19_05464 at 158.178 kb on + strand, within MPMX19_05464 at 158.179 kb on - strand, within MPMX19_05464 at 158.179 kb on - strand, within MPMX19_05464 at 158.208 kb on + strand, within MPMX19_05464 at 158.208 kb on + strand, within MPMX19_05464 at 158.209 kb on - strand, within MPMX19_05464 at 158.209 kb on - strand, within MPMX19_05464 at 158.209 kb on - strand, within MPMX19_05464 at 158.232 kb on + strand, within MPMX19_05464 at 158.233 kb on - strand, within MPMX19_05464 at 158.233 kb on - strand, within MPMX19_05464 at 158.233 kb on - strand, within MPMX19_05464 at 158.255 kb on + strand, within MPMX19_05464 at 158.256 kb on - strand, within MPMX19_05464 at 158.302 kb on + strand, within MPMX19_05464 at 158.302 kb on + strand, within MPMX19_05464 at 158.303 kb on - strand, within MPMX19_05464 at 158.303 kb on - strand, within MPMX19_05464 at 158.303 kb on - strand, within MPMX19_05464 at 158.303 kb on - strand, within MPMX19_05464 at 158.303 kb on - strand, within MPMX19_05464 at 158.316 kb on + strand, within MPMX19_05464 at 158.325 kb on + strand, within MPMX19_05464 at 158.325 kb on + strand, within MPMX19_05464 at 158.383 kb on - strand, within MPMX19_05464 at 158.388 kb on + strand, within MPMX19_05464 at 158.388 kb on + strand, within MPMX19_05464 at 158.389 kb on - strand, within MPMX19_05464 at 158.391 kb on + strand, within MPMX19_05464 at 158.391 kb on + strand, within MPMX19_05464 at 158.391 kb on + strand, within MPMX19_05464 at 158.391 kb on + strand, within MPMX19_05464 at 158.391 kb on + strand, within MPMX19_05464 at 158.392 kb on - strand, within MPMX19_05464 at 158.451 kb on - strand, within MPMX19_05464 at 158.451 kb on - strand, within MPMX19_05464 at 158.487 kb on + strand, within MPMX19_05464 at 158.487 kb on + strand, within MPMX19_05464 at 158.487 kb on + strand, within MPMX19_05464 at 158.487 kb on + strand, within MPMX19_05464 at 158.488 kb on - strand, within MPMX19_05464 at 158.488 kb on - strand, within MPMX19_05464 at 158.564 kb on + strand at 158.564 kb on + strand at 158.564 kb on + strand at 158.565 kb on - strand at 158.565 kb on - strand at 158.565 kb on - strand at 158.625 kb on + strand at 158.625 kb on + strand at 158.646 kb on + strand at 158.646 kb on + strand at 158.647 kb on - strand at 158.736 kb on - strand at 158.744 kb on + strand at 158.744 kb on + strand at 158.744 kb on + strand at 158.745 kb on - strand at 158.745 kb on - strand at 158.745 kb on - strand at 158.745 kb on - strand at 158.745 kb on - strand at 158.819 kb on + strand at 158.819 kb on + strand at 158.819 kb on + strand at 158.820 kb on - strand at 158.820 kb on - strand at 158.831 kb on + strand at 158.831 kb on + strand at 158.832 kb on - strand at 158.832 kb on - strand at 158.832 kb on - strand at 158.832 kb on - strand at 158.832 kb on - strand at 158.832 kb on - strand at 158.834 kb on + strand at 158.835 kb on - strand at 158.835 kb on - strand at 158.846 kb on + strand at 158.854 kb on + strand at 158.854 kb on + strand at 158.854 kb on + strand at 158.854 kb on + strand at 158.854 kb on + strand at 158.854 kb on + strand at 158.854 kb on + strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.855 kb on - strand at 158.865 kb on - strand at 158.865 kb on - strand at 158.878 kb on - strand at 158.883 kb on + strand at 158.883 kb on + strand at 158.883 kb on + strand at 158.883 kb on + strand at 158.883 kb on + strand at 158.884 kb on - strand at 158.884 kb on - strand at 158.884 kb on - strand at 158.884 kb on - strand at 158.884 kb on - strand at 158.884 kb on - strand at 158.889 kb on - strand at 158.898 kb on - strand at 158.898 kb on - strand at 158.986 kb on + strand at 159.016 kb on + strand at 159.045 kb on + strand at 159.045 kb on + strand at 159.045 kb on + strand at 159.045 kb on + strand at 159.045 kb on + strand at 159.045 kb on + strand at 159.046 kb on - strand at 159.046 kb on - strand at 159.046 kb on - strand at 159.047 kb on + strand at 159.048 kb on - strand at 159.048 kb on - strand at 159.106 kb on + strand at 159.106 kb on + strand at 159.106 kb on + strand at 159.107 kb on - strand at 159.107 kb on - strand at 159.107 kb on - strand at 159.234 kb on + strand at 159.235 kb on - strand at 159.251 kb on - strand at 159.299 kb on + strand at 159.299 kb on + strand at 159.299 kb on + strand at 159.300 kb on - strand at 159.300 kb on - strand at 159.300 kb on - strand at 159.300 kb on - strand at 159.300 kb on - strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.352 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.373 kb on - strand at 159.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 156,909 + MPMX19_05463 0.29 -1.2 156,909 + MPMX19_05463 0.29 +0.5 156,909 + MPMX19_05463 0.29 -0.3 156,909 + MPMX19_05463 0.29 +1.6 156,909 + MPMX19_05463 0.29 +0.6 156,909 + MPMX19_05463 0.29 -0.5 156,909 + MPMX19_05463 0.29 -0.0 156,909 + MPMX19_05463 0.29 -1.6 156,909 + MPMX19_05463 0.29 +0.8 156,910 - MPMX19_05463 0.29 -0.2 156,910 - MPMX19_05463 0.29 -0.4 156,910 - MPMX19_05463 0.29 +0.0 156,910 - MPMX19_05463 0.29 -0.4 156,910 - MPMX19_05463 0.29 -0.9 156,910 - MPMX19_05463 0.29 +1.6 156,910 - MPMX19_05463 0.29 -0.3 156,910 - MPMX19_05463 0.29 -0.2 156,910 - MPMX19_05463 0.29 -0.3 156,910 - MPMX19_05463 0.29 -1.8 156,910 - MPMX19_05463 0.29 -0.0 156,912 + MPMX19_05463 0.30 +0.3 156,912 + MPMX19_05463 0.30 +1.3 156,912 + MPMX19_05463 0.30 -0.7 156,912 + MPMX19_05463 0.30 -1.0 156,912 + MPMX19_05463 0.30 +1.8 156,913 - MPMX19_05463 0.30 -1.0 156,913 - MPMX19_05463 0.30 -1.2 156,924 + MPMX19_05463 0.31 -0.8 156,925 - MPMX19_05463 0.31 -0.5 156,925 - MPMX19_05463 0.31 -1.0 156,925 - MPMX19_05463 0.31 -0.4 157,258 + MPMX19_05463 0.69 +1.6 157,258 + MPMX19_05463 0.69 -0.1 157,258 + MPMX19_05463 0.69 -0.6 157,258 + MPMX19_05463 0.69 +0.3 157,259 - MPMX19_05463 0.69 -1.5 157,259 - MPMX19_05463 0.69 +0.4 157,259 - MPMX19_05463 0.69 -0.2 157,259 - MPMX19_05463 0.69 -0.1 157,259 - MPMX19_05463 0.69 +0.8 157,259 - MPMX19_05463 0.69 -1.8 157,259 - MPMX19_05463 0.69 -0.8 157,322 - MPMX19_05463 0.76 -1.6 157,541 + +1.1 157,563 - -1.1 157,618 + -1.0 157,618 + -0.7 157,618 + +0.3 157,618 + +0.8 157,618 + -1.8 157,618 + +0.8 157,619 - -0.5 157,619 - +0.6 157,619 - +0.4 157,631 + -0.6 157,632 - -1.7 157,632 - -2.3 157,632 - -0.2 157,632 - -1.3 157,632 - -0.2 157,632 - +1.3 157,639 + +1.1 157,651 + -1.8 157,651 + +0.0 157,652 - +0.7 157,736 + +0.6 157,736 + +0.6 157,736 + +0.9 157,736 + -1.2 157,736 + -0.6 157,736 + +1.4 157,737 - +1.1 157,737 - -0.3 157,737 - -1.3 157,737 - -0.4 157,737 - +1.4 157,737 - -1.4 157,947 + -1.0 157,947 + +0.1 157,948 - -1.8 157,948 - +1.6 157,948 - -2.1 157,948 - -1.5 158,134 - MPMX19_05464 0.35 -0.1 158,178 + MPMX19_05464 0.41 -1.6 158,178 + MPMX19_05464 0.41 -0.2 158,179 - MPMX19_05464 0.41 +0.1 158,179 - MPMX19_05464 0.41 -1.0 158,208 + MPMX19_05464 0.46 -0.6 158,208 + MPMX19_05464 0.46 -1.2 158,209 - MPMX19_05464 0.46 -3.1 158,209 - MPMX19_05464 0.46 +0.4 158,209 - MPMX19_05464 0.46 +0.3 158,232 + MPMX19_05464 0.49 -0.7 158,233 - MPMX19_05464 0.50 +0.1 158,233 - MPMX19_05464 0.50 -1.0 158,233 - MPMX19_05464 0.50 -2.0 158,255 + MPMX19_05464 0.53 -0.9 158,256 - MPMX19_05464 0.53 -0.2 158,302 + MPMX19_05464 0.60 -0.7 158,302 + MPMX19_05464 0.60 +0.7 158,303 - MPMX19_05464 0.60 -0.8 158,303 - MPMX19_05464 0.60 +0.1 158,303 - MPMX19_05464 0.60 -0.4 158,303 - MPMX19_05464 0.60 -0.4 158,303 - MPMX19_05464 0.60 -0.0 158,316 + MPMX19_05464 0.62 -0.4 158,325 + MPMX19_05464 0.63 -0.8 158,325 + MPMX19_05464 0.63 -0.4 158,383 - MPMX19_05464 0.72 -0.2 158,388 + MPMX19_05464 0.73 -1.8 158,388 + MPMX19_05464 0.73 -2.1 158,389 - MPMX19_05464 0.73 -1.2 158,391 + MPMX19_05464 0.73 -1.2 158,391 + MPMX19_05464 0.73 -0.0 158,391 + MPMX19_05464 0.73 -0.1 158,391 + MPMX19_05464 0.73 -0.9 158,391 + MPMX19_05464 0.73 -0.3 158,392 - MPMX19_05464 0.74 -1.0 158,451 - MPMX19_05464 0.83 -0.6 158,451 - MPMX19_05464 0.83 -0.0 158,487 + MPMX19_05464 0.88 -1.1 158,487 + MPMX19_05464 0.88 -0.4 158,487 + MPMX19_05464 0.88 -1.0 158,487 + MPMX19_05464 0.88 -0.2 158,488 - MPMX19_05464 0.88 -0.2 158,488 - MPMX19_05464 0.88 +0.8 158,564 + -0.3 158,564 + -0.4 158,564 + -0.8 158,565 - -0.9 158,565 - -1.6 158,565 - -0.8 158,625 + -0.0 158,625 + -0.1 158,646 + +0.1 158,646 + -0.0 158,647 - +1.2 158,736 - -0.0 158,744 + -0.8 158,744 + +0.2 158,744 + +1.6 158,745 - +1.1 158,745 - +0.1 158,745 - -0.4 158,745 - -1.7 158,745 - -0.4 158,819 + +0.4 158,819 + -1.3 158,819 + +2.6 158,820 - -0.8 158,820 - +1.6 158,831 + -0.4 158,831 + +0.4 158,832 - -0.2 158,832 - +1.2 158,832 - +0.1 158,832 - -0.4 158,832 - -0.8 158,832 - -0.8 158,834 + +0.1 158,835 - +1.8 158,835 - +1.1 158,846 + -1.4 158,854 + +0.2 158,854 + -0.2 158,854 + -0.3 158,854 + +0.4 158,854 + -0.4 158,854 + -0.4 158,854 + -1.2 158,855 - +0.1 158,855 - +0.2 158,855 - -0.9 158,855 - +1.3 158,855 - +0.5 158,855 - -1.0 158,855 - +0.1 158,855 - -0.9 158,855 - +1.2 158,855 - +0.2 158,855 - -0.2 158,865 - -0.4 158,865 - -0.0 158,878 - -0.3 158,883 + +0.4 158,883 + -1.8 158,883 + -1.3 158,883 + +2.0 158,883 + -0.2 158,884 - +0.6 158,884 - +0.5 158,884 - -0.9 158,884 - -0.0 158,884 - -1.1 158,884 - +0.4 158,889 - -0.3 158,898 - +0.0 158,898 - -1.6 158,986 + -0.4 159,016 + +0.2 159,045 + +0.6 159,045 + +0.1 159,045 + -0.4 159,045 + -0.0 159,045 + -0.8 159,045 + +0.5 159,046 - -0.9 159,046 - -0.8 159,046 - -0.2 159,047 + -1.6 159,048 - -1.8 159,048 - -2.0 159,106 + +1.1 159,106 + -0.6 159,106 + +0.6 159,107 - -0.2 159,107 - -1.5 159,107 - +1.6 159,234 + -0.6 159,235 - +0.9 159,251 - -1.2 159,299 + -1.5 159,299 + -0.9 159,299 + -0.2 159,300 - -1.6 159,300 - -0.3 159,300 - +1.1 159,300 - -0.3 159,300 - +0.1 159,351 + -1.0 159,351 + -1.0 159,351 + -0.2 159,351 + -0.6 159,352 - -1.6 159,363 - -0.0 159,363 - +0.2 159,363 - +0.6 159,363 - -0.6 159,363 - -0.6 159,373 - -0.3 159,373 - +1.1
Or see this region's nucleotide sequence