Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05216

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05214 and MPMX19_05215 overlap by 26 nucleotidesMPMX19_05215 and MPMX19_05216 are separated by 38 nucleotidesMPMX19_05216 and MPMX19_05217 are separated by 166 nucleotides MPMX19_05214: MPMX19_05214 - ECF RNA polymerase sigma factor SigE, at 740,303 to 740,983 _05214 MPMX19_05215: MPMX19_05215 - hypothetical protein, at 740,958 to 741,437 _05215 MPMX19_05216: MPMX19_05216 - hypothetical protein, at 741,476 to 743,158 _05216 MPMX19_05217: MPMX19_05217 - Flagellin, at 743,325 to 744,149 _05217 Position (kb) 741 742 743 744Strain fitness (log2 ratio) -2 -1 0 1 2 3at 740.646 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.814 kb on + strand, within MPMX19_05214at 740.815 kb on - strand, within MPMX19_05214at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.182 kb on - strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.350 kb on - strand, within MPMX19_05215at 741.350 kb on - strand, within MPMX19_05215at 741.400 kb on + strandat 741.401 kb on - strandat 741.401 kb on - strandat 741.401 kb on - strandat 741.421 kb on + strandat 741.451 kb on + strandat 741.452 kb on - strandat 741.501 kb on + strandat 741.501 kb on + strandat 741.501 kb on + strandat 741.501 kb on + strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.558 kb on + strandat 741.558 kb on + strandat 741.559 kb on - strandat 741.559 kb on - strandat 741.559 kb on - strandat 741.559 kb on - strandat 741.561 kb on + strandat 741.561 kb on + strandat 741.561 kb on + strandat 741.561 kb on + strandat 741.562 kb on - strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.583 kb on - strandat 741.583 kb on - strandat 741.678 kb on + strand, within MPMX19_05216at 741.678 kb on + strand, within MPMX19_05216at 741.678 kb on + strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.768 kb on + strand, within MPMX19_05216at 741.769 kb on - strand, within MPMX19_05216at 741.769 kb on - strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.890 kb on + strand, within MPMX19_05216at 741.934 kb on - strand, within MPMX19_05216at 741.934 kb on - strand, within MPMX19_05216at 742.245 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.255 kb on - strand, within MPMX19_05216at 742.255 kb on - strand, within MPMX19_05216at 742.255 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.563 kb on + strand, within MPMX19_05216at 742.564 kb on - strand, within MPMX19_05216at 742.564 kb on - strand, within MPMX19_05216at 742.564 kb on - strand, within MPMX19_05216at 742.564 kb on - strand, within MPMX19_05216at 742.564 kb on - strand, within MPMX19_05216at 742.564 kb on - strand, within MPMX19_05216at 742.719 kb on + strand, within MPMX19_05216at 742.800 kb on + strand, within MPMX19_05216at 742.800 kb on + strand, within MPMX19_05216at 742.800 kb on + strand, within MPMX19_05216at 742.800 kb on + strand, within MPMX19_05216at 742.801 kb on - strand, within MPMX19_05216at 742.801 kb on - strand, within MPMX19_05216at 742.860 kb on + strand, within MPMX19_05216at 742.860 kb on + strand, within MPMX19_05216at 742.860 kb on + strand, within MPMX19_05216at 742.860 kb on + strand, within MPMX19_05216at 742.860 kb on + strand, within MPMX19_05216at 742.861 kb on - strand, within MPMX19_05216at 742.861 kb on - strand, within MPMX19_05216at 742.861 kb on - strand, within MPMX19_05216at 742.861 kb on - strand, within MPMX19_05216at 742.969 kb on + strand, within MPMX19_05216at 742.969 kb on + strand, within MPMX19_05216at 742.971 kb on + strand, within MPMX19_05216at 742.971 kb on + strand, within MPMX19_05216at 742.971 kb on + strand, within MPMX19_05216at 742.971 kb on + strand, within MPMX19_05216at 742.972 kb on - strand, within MPMX19_05216at 742.972 kb on - strand, within MPMX19_05216at 742.972 kb on - strand, within MPMX19_05216at 742.972 kb on - strand, within MPMX19_05216at 742.972 kb on - strand, within MPMX19_05216at 742.972 kb on - strand, within MPMX19_05216at 742.972 kb on - strand, within MPMX19_05216at 743.068 kb on - strandat 743.109 kb on + strandat 743.109 kb on + strandat 743.821 kb on + strand, within MPMX19_05217at 743.822 kb on - strand, within MPMX19_05217at 744.103 kb on + strandat 744.103 kb on + strandat 744.103 kb on + strandat 744.104 kb on - strandat 744.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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740,646 + MPMX19_05214 0.50 -0.2
740,778 + MPMX19_05214 0.70 -0.2
740,778 + MPMX19_05214 0.70 +1.1
740,778 + MPMX19_05214 0.70 -2.0
740,778 + MPMX19_05214 0.70 -0.7
740,778 + MPMX19_05214 0.70 +1.0
740,778 + MPMX19_05214 0.70 +0.6
740,779 - MPMX19_05214 0.70 -0.4
740,779 - MPMX19_05214 0.70 -0.8
740,779 - MPMX19_05214 0.70 +0.4
740,779 - MPMX19_05214 0.70 -0.7
740,779 - MPMX19_05214 0.70 -1.2
740,779 - MPMX19_05214 0.70 -0.8
740,779 - MPMX19_05214 0.70 -0.5
740,779 - MPMX19_05214 0.70 -0.3
740,779 - MPMX19_05214 0.70 +2.8
740,814 + MPMX19_05214 0.75 +0.5
740,815 - MPMX19_05214 0.75 +0.8
741,181 + MPMX19_05215 0.46 -1.3
741,181 + MPMX19_05215 0.46 +0.3
741,181 + MPMX19_05215 0.46 +1.2
741,181 + MPMX19_05215 0.46 +0.2
741,181 + MPMX19_05215 0.46 +0.0
741,182 - MPMX19_05215 0.47 -0.0
741,349 + MPMX19_05215 0.81 +0.2
741,349 + MPMX19_05215 0.81 -2.2
741,349 + MPMX19_05215 0.81 +0.8
741,349 + MPMX19_05215 0.81 -1.8
741,349 + MPMX19_05215 0.81 +0.2
741,350 - MPMX19_05215 0.82 +1.3
741,350 - MPMX19_05215 0.82 -0.8
741,400 + -2.1
741,401 - +0.2
741,401 - -1.3
741,401 - +1.2
741,421 + -0.2
741,451 + +0.3
741,452 - -1.3
741,501 + +0.5
741,501 + -0.8
741,501 + +0.6
741,501 + -0.9
741,502 - +0.5
741,502 - -0.5
741,502 - +0.0
741,502 - -1.2
741,502 - -0.2
741,502 - -0.1
741,502 - -2.4
741,558 + +0.2
741,558 + -0.5
741,559 - -0.4
741,559 - -0.7
741,559 - -0.3
741,559 - -0.2
741,561 + +0.1
741,561 + -0.1
741,561 + -0.7
741,561 + +0.2
741,562 - +0.1
741,582 + -1.3
741,582 + -1.3
741,582 + +0.5
741,582 + -2.1
741,582 + +0.4
741,583 - -0.7
741,583 - +1.0
741,678 + MPMX19_05216 0.12 -0.8
741,678 + MPMX19_05216 0.12 -0.7
741,678 + MPMX19_05216 0.12 +0.4
741,679 - MPMX19_05216 0.12 -0.8
741,679 - MPMX19_05216 0.12 -0.3
741,679 - MPMX19_05216 0.12 -0.4
741,679 - MPMX19_05216 0.12 -0.0
741,679 - MPMX19_05216 0.12 -0.1
741,679 - MPMX19_05216 0.12 -1.8
741,768 + MPMX19_05216 0.17 +0.3
741,769 - MPMX19_05216 0.17 +0.8
741,769 - MPMX19_05216 0.17 -1.5
741,789 + MPMX19_05216 0.19 +0.6
741,789 + MPMX19_05216 0.19 +0.3
741,789 + MPMX19_05216 0.19 -0.1
741,789 + MPMX19_05216 0.19 +0.4
741,789 + MPMX19_05216 0.19 -2.3
741,789 + MPMX19_05216 0.19 -0.3
741,789 + MPMX19_05216 0.19 -0.3
741,789 + MPMX19_05216 0.19 -2.1
741,789 + MPMX19_05216 0.19 -0.9
741,789 + MPMX19_05216 0.19 +0.4
741,789 + MPMX19_05216 0.19 -0.7
741,790 - MPMX19_05216 0.19 -0.4
741,790 - MPMX19_05216 0.19 -0.6
741,790 - MPMX19_05216 0.19 -0.2
741,790 - MPMX19_05216 0.19 +0.1
741,890 + MPMX19_05216 0.25 -0.2
741,934 - MPMX19_05216 0.27 -1.1
741,934 - MPMX19_05216 0.27 +0.5
742,245 + MPMX19_05216 0.46 -1.0
742,254 + MPMX19_05216 0.46 -0.6
742,254 + MPMX19_05216 0.46 +1.5
742,254 + MPMX19_05216 0.46 +0.7
742,254 + MPMX19_05216 0.46 -0.6
742,254 + MPMX19_05216 0.46 -0.6
742,255 - MPMX19_05216 0.46 +0.4
742,255 - MPMX19_05216 0.46 -0.4
742,255 - MPMX19_05216 0.46 -0.8
742,345 - MPMX19_05216 0.52 -0.4
742,345 - MPMX19_05216 0.52 -0.1
742,345 - MPMX19_05216 0.52 -0.7
742,345 - MPMX19_05216 0.52 -0.3
742,345 - MPMX19_05216 0.52 -0.7
742,345 - MPMX19_05216 0.52 -0.6
742,563 + MPMX19_05216 0.65 +0.9
742,563 + MPMX19_05216 0.65 -0.1
742,563 + MPMX19_05216 0.65 -0.1
742,563 + MPMX19_05216 0.65 +1.8
742,563 + MPMX19_05216 0.65 -1.1
742,563 + MPMX19_05216 0.65 -1.5
742,563 + MPMX19_05216 0.65 -0.6
742,563 + MPMX19_05216 0.65 -0.2
742,563 + MPMX19_05216 0.65 -1.3
742,563 + MPMX19_05216 0.65 -2.1
742,563 + MPMX19_05216 0.65 +0.5
742,563 + MPMX19_05216 0.65 -0.5
742,563 + MPMX19_05216 0.65 -0.7
742,563 + MPMX19_05216 0.65 +0.3
742,564 - MPMX19_05216 0.65 -2.4
742,564 - MPMX19_05216 0.65 +1.1
742,564 - MPMX19_05216 0.65 +0.6
742,564 - MPMX19_05216 0.65 -1.8
742,564 - MPMX19_05216 0.65 +0.8
742,564 - MPMX19_05216 0.65 -0.4
742,719 + MPMX19_05216 0.74 -0.5
742,800 + MPMX19_05216 0.79 +1.0
742,800 + MPMX19_05216 0.79 +0.5
742,800 + MPMX19_05216 0.79 -0.4
742,800 + MPMX19_05216 0.79 -1.4
742,801 - MPMX19_05216 0.79 +0.6
742,801 - MPMX19_05216 0.79 -1.0
742,860 + MPMX19_05216 0.82 -0.1
742,860 + MPMX19_05216 0.82 -1.8
742,860 + MPMX19_05216 0.82 -0.2
742,860 + MPMX19_05216 0.82 +0.2
742,860 + MPMX19_05216 0.82 -0.1
742,861 - MPMX19_05216 0.82 +2.2
742,861 - MPMX19_05216 0.82 -1.1
742,861 - MPMX19_05216 0.82 +0.9
742,861 - MPMX19_05216 0.82 -0.2
742,969 + MPMX19_05216 0.89 -1.7
742,969 + MPMX19_05216 0.89 +1.0
742,971 + MPMX19_05216 0.89 +1.2
742,971 + MPMX19_05216 0.89 -1.8
742,971 + MPMX19_05216 0.89 +0.3
742,971 + MPMX19_05216 0.89 +0.8
742,972 - MPMX19_05216 0.89 -0.5
742,972 - MPMX19_05216 0.89 +0.3
742,972 - MPMX19_05216 0.89 -0.5
742,972 - MPMX19_05216 0.89 -1.4
742,972 - MPMX19_05216 0.89 -0.1
742,972 - MPMX19_05216 0.89 -2.1
742,972 - MPMX19_05216 0.89 -1.1
743,068 - +0.0
743,109 + +0.5
743,109 + +0.1
743,821 + MPMX19_05217 0.60 -0.7
743,822 - MPMX19_05217 0.60 -1.9
744,103 + -0.9
744,103 + +0.1
744,103 + -1.6
744,104 - -1.2
744,104 - +0.2

Or see this region's nucleotide sequence