Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04888

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04887 and MPMX19_04888 are separated by 66 nucleotidesMPMX19_04888 and MPMX19_04889 are separated by 30 nucleotides MPMX19_04887: MPMX19_04887 - Gamma-glutamylputrescine oxidoreductase, at 334,092 to 335,372 _04887 MPMX19_04888: MPMX19_04888 - hypothetical protein, at 335,439 to 336,491 _04888 MPMX19_04889: MPMX19_04889 - Chromosome partition protein Smc, at 336,522 to 339,983 _04889 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.473 kb on + strand, within MPMX19_04887at 334.473 kb on + strand, within MPMX19_04887at 334.473 kb on + strand, within MPMX19_04887at 334.473 kb on + strand, within MPMX19_04887at 334.473 kb on + strand, within MPMX19_04887at 334.474 kb on - strand, within MPMX19_04887at 334.474 kb on - strand, within MPMX19_04887at 334.474 kb on - strand, within MPMX19_04887at 334.474 kb on - strand, within MPMX19_04887at 334.545 kb on + strand, within MPMX19_04887at 334.546 kb on - strand, within MPMX19_04887at 334.546 kb on - strand, within MPMX19_04887at 334.546 kb on - strand, within MPMX19_04887at 334.546 kb on - strand, within MPMX19_04887at 334.605 kb on + strand, within MPMX19_04887at 334.605 kb on + strand, within MPMX19_04887at 334.605 kb on + strand, within MPMX19_04887at 334.605 kb on + strand, within MPMX19_04887at 334.605 kb on + strand, within MPMX19_04887at 334.606 kb on - strand, within MPMX19_04887at 334.606 kb on - strand, within MPMX19_04887at 334.606 kb on - strand, within MPMX19_04887at 334.606 kb on - strand, within MPMX19_04887at 334.656 kb on + strand, within MPMX19_04887at 334.656 kb on + strand, within MPMX19_04887at 334.809 kb on + strand, within MPMX19_04887at 334.809 kb on + strand, within MPMX19_04887at 334.810 kb on - strand, within MPMX19_04887at 334.810 kb on - strand, within MPMX19_04887at 334.810 kb on - strand, within MPMX19_04887at 334.810 kb on - strand, within MPMX19_04887at 334.810 kb on - strand, within MPMX19_04887at 334.810 kb on - strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.863 kb on + strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.864 kb on - strand, within MPMX19_04887at 334.956 kb on + strand, within MPMX19_04887at 334.956 kb on + strand, within MPMX19_04887at 334.956 kb on + strand, within MPMX19_04887at 334.956 kb on + strand, within MPMX19_04887at 334.956 kb on + strand, within MPMX19_04887at 334.956 kb on + strand, within MPMX19_04887at 334.957 kb on - strand, within MPMX19_04887at 334.957 kb on - strand, within MPMX19_04887at 335.007 kb on + strand, within MPMX19_04887at 335.007 kb on + strand, within MPMX19_04887at 335.007 kb on + strand, within MPMX19_04887at 335.007 kb on + strand, within MPMX19_04887at 335.007 kb on + strand, within MPMX19_04887at 335.008 kb on - strand, within MPMX19_04887at 335.008 kb on - strand, within MPMX19_04887at 335.008 kb on - strand, within MPMX19_04887at 335.067 kb on + strand, within MPMX19_04887at 335.067 kb on + strand, within MPMX19_04887at 335.067 kb on + strand, within MPMX19_04887at 335.067 kb on + strand, within MPMX19_04887at 335.068 kb on + strand, within MPMX19_04887at 335.068 kb on - strand, within MPMX19_04887at 335.068 kb on - strand, within MPMX19_04887at 335.068 kb on - strand, within MPMX19_04887at 335.097 kb on + strand, within MPMX19_04887at 335.097 kb on + strand, within MPMX19_04887at 335.097 kb on + strand, within MPMX19_04887at 335.098 kb on - strand, within MPMX19_04887at 335.098 kb on - strand, within MPMX19_04887at 335.098 kb on - strand, within MPMX19_04887at 335.098 kb on - strand, within MPMX19_04887at 335.098 kb on - strand, within MPMX19_04887at 335.098 kb on - strand, within MPMX19_04887at 335.172 kb on + strand, within MPMX19_04887at 335.172 kb on + strand, within MPMX19_04887at 335.172 kb on + strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.173 kb on - strand, within MPMX19_04887at 335.184 kb on + strand, within MPMX19_04887at 335.185 kb on - strand, within MPMX19_04887at 335.370 kb on + strandat 335.370 kb on + strandat 335.370 kb on + strandat 335.370 kb on + strandat 335.370 kb on + strandat 335.371 kb on - strandat 335.371 kb on - strandat 335.371 kb on - strandat 335.402 kb on - strandat 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.042 kb on + strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.043 kb on - strand, within MPMX19_04888at 336.084 kb on + strand, within MPMX19_04888at 336.084 kb on + strand, within MPMX19_04888at 336.084 kb on + strand, within MPMX19_04888at 336.084 kb on + strand, within MPMX19_04888at 336.084 kb on + strand, within MPMX19_04888at 336.084 kb on + strand, within MPMX19_04888at 336.084 kb on + strand, within MPMX19_04888at 336.085 kb on - strand, within MPMX19_04888at 336.085 kb on - strand, within MPMX19_04888at 336.085 kb on - strand, within MPMX19_04888at 336.085 kb on - strand, within MPMX19_04888at 336.085 kb on - strand, within MPMX19_04888at 336.085 kb on - strand, within MPMX19_04888at 336.086 kb on + strand, within MPMX19_04888at 336.159 kb on + strand, within MPMX19_04888at 336.159 kb on + strand, within MPMX19_04888at 336.159 kb on + strand, within MPMX19_04888at 336.159 kb on + strand, within MPMX19_04888at 336.160 kb on - strand, within MPMX19_04888at 336.160 kb on - strand, within MPMX19_04888at 336.160 kb on - strand, within MPMX19_04888at 336.160 kb on - strand, within MPMX19_04888at 336.173 kb on + strand, within MPMX19_04888at 336.174 kb on - strand, within MPMX19_04888at 336.174 kb on - strand, within MPMX19_04888at 336.174 kb on - strand, within MPMX19_04888at 336.174 kb on - strand, within MPMX19_04888at 336.174 kb on - strand, within MPMX19_04888at 336.174 kb on - strand, within MPMX19_04888at 336.231 kb on + strand, within MPMX19_04888at 336.231 kb on + strand, within MPMX19_04888at 336.231 kb on + strand, within MPMX19_04888at 336.231 kb on + strand, within MPMX19_04888at 336.232 kb on - strand, within MPMX19_04888at 336.232 kb on - strand, within MPMX19_04888at 336.232 kb on - strand, within MPMX19_04888at 336.232 kb on - strand, within MPMX19_04888at 336.435 kb on + strandat 336.435 kb on + strandat 336.435 kb on + strandat 336.436 kb on - strandat 336.436 kb on - strandat 336.456 kb on + strandat 336.456 kb on + strandat 336.456 kb on + strandat 336.457 kb on - strandat 336.457 kb on - strandat 336.523 kb on + strandat 336.524 kb on - strandat 336.524 kb on - strandat 336.524 kb on - strandat 336.524 kb on - strandat 336.524 kb on - strandat 336.871 kb on + strand, within MPMX19_04889at 336.871 kb on + strand, within MPMX19_04889at 336.871 kb on + strand, within MPMX19_04889at 336.871 kb on + strand, within MPMX19_04889at 336.871 kb on + strand, within MPMX19_04889at 336.871 kb on + strand, within MPMX19_04889at 336.871 kb on + strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.872 kb on - strand, within MPMX19_04889at 336.922 kb on + strand, within MPMX19_04889at 336.923 kb on - strand, within MPMX19_04889at 336.923 kb on - strand, within MPMX19_04889at 337.292 kb on + strand, within MPMX19_04889at 337.292 kb on + strand, within MPMX19_04889at 337.292 kb on + strand, within MPMX19_04889at 337.292 kb on + strand, within MPMX19_04889at 337.293 kb on - strand, within MPMX19_04889at 337.293 kb on - strand, within MPMX19_04889at 337.293 kb on - strand, within MPMX19_04889at 337.293 kb on - strand, within MPMX19_04889at 337.293 kb on - strand, within MPMX19_04889

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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334,473 + MPMX19_04887 0.30 -0.1
334,473 + MPMX19_04887 0.30 +0.5
334,473 + MPMX19_04887 0.30 -0.5
334,473 + MPMX19_04887 0.30 -0.8
334,473 + MPMX19_04887 0.30 -0.8
334,474 - MPMX19_04887 0.30 +0.2
334,474 - MPMX19_04887 0.30 -0.2
334,474 - MPMX19_04887 0.30 +0.2
334,474 - MPMX19_04887 0.30 +0.4
334,545 + MPMX19_04887 0.35 +0.9
334,546 - MPMX19_04887 0.35 -1.3
334,546 - MPMX19_04887 0.35 +0.3
334,546 - MPMX19_04887 0.35 +0.1
334,546 - MPMX19_04887 0.35 -2.9
334,605 + MPMX19_04887 0.40 -0.3
334,605 + MPMX19_04887 0.40 +1.2
334,605 + MPMX19_04887 0.40 -0.3
334,605 + MPMX19_04887 0.40 -0.1
334,605 + MPMX19_04887 0.40 +0.0
334,606 - MPMX19_04887 0.40 -0.6
334,606 - MPMX19_04887 0.40 -0.5
334,606 - MPMX19_04887 0.40 -0.3
334,606 - MPMX19_04887 0.40 -2.3
334,656 + MPMX19_04887 0.44 -0.3
334,656 + MPMX19_04887 0.44 -0.9
334,809 + MPMX19_04887 0.56 +0.3
334,809 + MPMX19_04887 0.56 -0.1
334,810 - MPMX19_04887 0.56 -0.3
334,810 - MPMX19_04887 0.56 +0.2
334,810 - MPMX19_04887 0.56 -0.1
334,810 - MPMX19_04887 0.56 -1.2
334,810 - MPMX19_04887 0.56 +0.7
334,810 - MPMX19_04887 0.56 +0.9
334,863 + MPMX19_04887 0.60 -1.6
334,863 + MPMX19_04887 0.60 +0.3
334,863 + MPMX19_04887 0.60 +0.2
334,863 + MPMX19_04887 0.60 -1.4
334,863 + MPMX19_04887 0.60 +0.7
334,863 + MPMX19_04887 0.60 +1.1
334,863 + MPMX19_04887 0.60 -0.5
334,863 + MPMX19_04887 0.60 -1.1
334,863 + MPMX19_04887 0.60 -1.3
334,863 + MPMX19_04887 0.60 -1.1
334,864 - MPMX19_04887 0.60 +0.1
334,864 - MPMX19_04887 0.60 +0.4
334,864 - MPMX19_04887 0.60 +0.8
334,864 - MPMX19_04887 0.60 +0.3
334,864 - MPMX19_04887 0.60 -0.4
334,864 - MPMX19_04887 0.60 -1.4
334,864 - MPMX19_04887 0.60 +1.5
334,864 - MPMX19_04887 0.60 +0.3
334,864 - MPMX19_04887 0.60 -0.8
334,864 - MPMX19_04887 0.60 -0.4
334,864 - MPMX19_04887 0.60 +0.8
334,864 - MPMX19_04887 0.60 -0.3
334,864 - MPMX19_04887 0.60 +1.5
334,864 - MPMX19_04887 0.60 +0.4
334,956 + MPMX19_04887 0.67 -0.8
334,956 + MPMX19_04887 0.67 -2.2
334,956 + MPMX19_04887 0.67 -1.8
334,956 + MPMX19_04887 0.67 -0.1
334,956 + MPMX19_04887 0.67 -0.6
334,956 + MPMX19_04887 0.67 -0.4
334,957 - MPMX19_04887 0.68 +0.2
334,957 - MPMX19_04887 0.68 -0.1
335,007 + MPMX19_04887 0.71 -0.2
335,007 + MPMX19_04887 0.71 -0.9
335,007 + MPMX19_04887 0.71 +0.3
335,007 + MPMX19_04887 0.71 -0.2
335,007 + MPMX19_04887 0.71 +0.7
335,008 - MPMX19_04887 0.72 -1.0
335,008 - MPMX19_04887 0.72 +0.5
335,008 - MPMX19_04887 0.72 -0.6
335,067 + MPMX19_04887 0.76 -0.1
335,067 + MPMX19_04887 0.76 -0.3
335,067 + MPMX19_04887 0.76 -2.8
335,067 + MPMX19_04887 0.76 +0.5
335,068 + MPMX19_04887 0.76 -0.1
335,068 - MPMX19_04887 0.76 -1.6
335,068 - MPMX19_04887 0.76 +1.9
335,068 - MPMX19_04887 0.76 -1.6
335,097 + MPMX19_04887 0.78 +0.5
335,097 + MPMX19_04887 0.78 -0.7
335,097 + MPMX19_04887 0.78 -1.1
335,098 - MPMX19_04887 0.79 +0.5
335,098 - MPMX19_04887 0.79 -0.8
335,098 - MPMX19_04887 0.79 -0.8
335,098 - MPMX19_04887 0.79 +0.5
335,098 - MPMX19_04887 0.79 +1.1
335,098 - MPMX19_04887 0.79 +0.3
335,172 + MPMX19_04887 0.84 +0.7
335,172 + MPMX19_04887 0.84 -1.5
335,172 + MPMX19_04887 0.84 -0.5
335,173 - MPMX19_04887 0.84 +0.3
335,173 - MPMX19_04887 0.84 +1.6
335,173 - MPMX19_04887 0.84 +0.5
335,173 - MPMX19_04887 0.84 +0.9
335,173 - MPMX19_04887 0.84 +0.5
335,173 - MPMX19_04887 0.84 -0.9
335,173 - MPMX19_04887 0.84 +0.9
335,173 - MPMX19_04887 0.84 +0.9
335,173 - MPMX19_04887 0.84 -0.4
335,173 - MPMX19_04887 0.84 -0.8
335,173 - MPMX19_04887 0.84 -0.6
335,184 + MPMX19_04887 0.85 +0.9
335,185 - MPMX19_04887 0.85 +0.8
335,370 + -1.0
335,370 + -0.2
335,370 + -0.6
335,370 + -0.8
335,370 + -1.5
335,371 - +0.4
335,371 - -0.9
335,371 - -0.3
335,402 - -0.3
336,042 + MPMX19_04888 0.57 +0.4
336,042 + MPMX19_04888 0.57 -0.8
336,042 + MPMX19_04888 0.57 -1.8
336,042 + MPMX19_04888 0.57 -0.6
336,042 + MPMX19_04888 0.57 -0.8
336,042 + MPMX19_04888 0.57 -1.0
336,042 + MPMX19_04888 0.57 -0.6
336,042 + MPMX19_04888 0.57 -1.0
336,042 + MPMX19_04888 0.57 +1.5
336,042 + MPMX19_04888 0.57 +0.4
336,043 - MPMX19_04888 0.57 -0.4
336,043 - MPMX19_04888 0.57 -0.1
336,043 - MPMX19_04888 0.57 -0.5
336,043 - MPMX19_04888 0.57 -1.0
336,043 - MPMX19_04888 0.57 +0.7
336,043 - MPMX19_04888 0.57 -1.6
336,043 - MPMX19_04888 0.57 -0.3
336,043 - MPMX19_04888 0.57 -0.5
336,043 - MPMX19_04888 0.57 -0.4
336,043 - MPMX19_04888 0.57 -1.6
336,043 - MPMX19_04888 0.57 -1.0
336,084 + MPMX19_04888 0.61 -0.0
336,084 + MPMX19_04888 0.61 -2.5
336,084 + MPMX19_04888 0.61 +0.5
336,084 + MPMX19_04888 0.61 +1.0
336,084 + MPMX19_04888 0.61 +0.1
336,084 + MPMX19_04888 0.61 +0.5
336,084 + MPMX19_04888 0.61 +1.2
336,085 - MPMX19_04888 0.61 -0.2
336,085 - MPMX19_04888 0.61 -0.0
336,085 - MPMX19_04888 0.61 +0.4
336,085 - MPMX19_04888 0.61 +0.1
336,085 - MPMX19_04888 0.61 -1.9
336,085 - MPMX19_04888 0.61 -0.5
336,086 + MPMX19_04888 0.61 +0.6
336,159 + MPMX19_04888 0.68 +0.1
336,159 + MPMX19_04888 0.68 -1.0
336,159 + MPMX19_04888 0.68 +0.0
336,159 + MPMX19_04888 0.68 +0.5
336,160 - MPMX19_04888 0.68 +0.3
336,160 - MPMX19_04888 0.68 +0.6
336,160 - MPMX19_04888 0.68 -0.0
336,160 - MPMX19_04888 0.68 +0.1
336,173 + MPMX19_04888 0.70 -0.5
336,174 - MPMX19_04888 0.70 +0.1
336,174 - MPMX19_04888 0.70 -1.1
336,174 - MPMX19_04888 0.70 +0.5
336,174 - MPMX19_04888 0.70 -0.8
336,174 - MPMX19_04888 0.70 -1.3
336,174 - MPMX19_04888 0.70 +0.5
336,231 + MPMX19_04888 0.75 +1.2
336,231 + MPMX19_04888 0.75 +0.3
336,231 + MPMX19_04888 0.75 +0.8
336,231 + MPMX19_04888 0.75 -0.0
336,232 - MPMX19_04888 0.75 +2.0
336,232 - MPMX19_04888 0.75 +1.1
336,232 - MPMX19_04888 0.75 +0.5
336,232 - MPMX19_04888 0.75 -0.5
336,435 + +0.7
336,435 + +0.3
336,435 + +0.3
336,436 - -1.3
336,436 - +0.1
336,456 + +0.7
336,456 + -0.2
336,456 + +0.2
336,457 - -0.5
336,457 - -1.2
336,523 + -0.2
336,524 - +0.3
336,524 - +0.4
336,524 - +0.2
336,524 - +0.5
336,524 - +0.3
336,871 + MPMX19_04889 0.10 +0.5
336,871 + MPMX19_04889 0.10 -1.3
336,871 + MPMX19_04889 0.10 +0.4
336,871 + MPMX19_04889 0.10 -0.0
336,871 + MPMX19_04889 0.10 -1.0
336,871 + MPMX19_04889 0.10 +0.5
336,871 + MPMX19_04889 0.10 +2.0
336,872 - MPMX19_04889 0.10 +0.7
336,872 - MPMX19_04889 0.10 +0.1
336,872 - MPMX19_04889 0.10 -1.0
336,872 - MPMX19_04889 0.10 +0.3
336,872 - MPMX19_04889 0.10 -0.2
336,872 - MPMX19_04889 0.10 +0.2
336,872 - MPMX19_04889 0.10 +0.7
336,872 - MPMX19_04889 0.10 +0.1
336,872 - MPMX19_04889 0.10 +0.8
336,872 - MPMX19_04889 0.10 +0.1
336,872 - MPMX19_04889 0.10 -0.3
336,872 - MPMX19_04889 0.10 +0.8
336,872 - MPMX19_04889 0.10 -0.8
336,872 - MPMX19_04889 0.10 -0.4
336,872 - MPMX19_04889 0.10 -0.0
336,872 - MPMX19_04889 0.10 -0.0
336,872 - MPMX19_04889 0.10 -1.5
336,872 - MPMX19_04889 0.10 +0.5
336,922 + MPMX19_04889 0.12 +0.2
336,923 - MPMX19_04889 0.12 +0.7
336,923 - MPMX19_04889 0.12 +0.2
337,292 + MPMX19_04889 0.22 -0.7
337,292 + MPMX19_04889 0.22 +1.5
337,292 + MPMX19_04889 0.22 +0.9
337,292 + MPMX19_04889 0.22 -2.5
337,293 - MPMX19_04889 0.22 -1.2
337,293 - MPMX19_04889 0.22 +0.1
337,293 - MPMX19_04889 0.22 -1.6
337,293 - MPMX19_04889 0.22 -1.3
337,293 - MPMX19_04889 0.22 +0.8

Or see this region's nucleotide sequence