Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04816 and MPMX19_04817 are separated by 227 nucleotides MPMX19_04817 and MPMX19_04818 are separated by 261 nucleotides MPMX19_04818 and MPMX19_04819 are separated by 354 nucleotides
MPMX19_04816: MPMX19_04816 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 220,920 to 221,624
_04816
MPMX19_04817: MPMX19_04817 - HTH-type transcriptional repressor NsrR, at 221,852 to 222,304
_04817
MPMX19_04818: MPMX19_04818 - Hydroxyacylglutathione hydrolase GloC, at 222,566 to 223,198
_04818
MPMX19_04819: MPMX19_04819 - hypothetical protein, at 223,553 to 224,320
_04819
Position (kb) 222
223
224 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.733 kb on - strand at 221.816 kb on + strand at 221.838 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 222.200 kb on - strand, within MPMX19_04817 at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.320 kb on - strand at 222.320 kb on - strand at 222.322 kb on + strand at 222.323 kb on - strand at 222.323 kb on - strand at 222.356 kb on + strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.372 kb on - strand at 222.381 kb on + strand at 222.382 kb on - strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.523 kb on + strand at 222.523 kb on + strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.197 kb on - strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.252 kb on - strand at 223.314 kb on - strand at 223.314 kb on - strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.472 kb on + strand at 223.473 kb on - strand at 223.473 kb on - strand at 223.495 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.795 kb on - strand, within MPMX19_04819 at 223.924 kb on + strand, within MPMX19_04819 at 223.925 kb on - strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 221,659 + -0.3 221,659 + -3.3 221,659 + -0.5 221,659 + -0.4 221,660 - -0.3 221,660 - +1.2 221,660 - -0.7 221,660 - -1.7 221,660 - +0.7 221,660 - -1.2 221,660 - +0.1 221,733 - +0.5 221,816 + +0.7 221,838 + +0.2 221,847 + +0.5 221,847 + -0.3 221,847 + +0.3 221,847 + -0.2 221,847 + +0.4 221,850 + +0.4 221,850 + -2.0 221,850 + -0.8 222,200 - MPMX19_04817 0.77 +0.1 222,282 + -1.0 222,282 + -0.0 222,282 + -1.3 222,282 + +1.1 222,283 - -0.6 222,283 - -0.3 222,283 - -0.5 222,320 - -0.3 222,320 - +0.5 222,322 + -1.8 222,323 - -1.5 222,323 - -1.8 222,356 + +1.2 222,357 - -0.3 222,357 - -1.0 222,357 - +0.8 222,357 - +0.5 222,372 - -1.5 222,381 + +1.0 222,382 - -0.5 222,436 + -0.0 222,436 + +1.1 222,436 + -0.8 222,436 + -0.2 222,436 + -0.0 222,436 + -0.3 222,436 + +1.5 222,437 - -0.4 222,437 - -0.5 222,437 - +0.1 222,437 - +0.5 222,437 - -0.0 222,437 - +0.2 222,437 - -0.6 222,523 + -1.1 222,523 + -0.1 222,524 - +0.1 222,524 - -0.2 222,524 - -0.5 222,524 - -0.7 222,524 - -0.6 222,537 + +1.5 222,537 + -0.2 222,537 + +0.6 222,537 + -0.3 222,537 + -0.8 222,537 + -1.6 222,537 + -1.3 222,537 + -0.6 222,538 - -0.2 222,538 - -0.0 222,538 - -0.4 222,538 - -0.2 222,538 - -0.3 222,538 - -1.5 222,572 + -1.3 222,572 + +0.3 222,572 + +0.4 222,572 + +0.4 222,572 + -0.8 222,572 + +0.6 222,572 + -1.1 222,572 + +0.3 222,572 + +0.5 222,572 + +0.1 222,572 + +0.4 222,573 - +0.2 222,573 - +0.3 222,573 - -1.6 222,573 - -1.4 222,573 - -0.3 222,573 - -0.6 222,573 - +0.7 222,573 - +1.5 223,067 + MPMX19_04818 0.79 -0.2 223,067 + MPMX19_04818 0.79 -0.2 223,067 + MPMX19_04818 0.79 -1.4 223,067 + MPMX19_04818 0.79 -0.5 223,067 + MPMX19_04818 0.79 +0.2 223,067 + MPMX19_04818 0.79 -0.9 223,068 - MPMX19_04818 0.79 -0.4 223,068 - MPMX19_04818 0.79 -0.9 223,068 - MPMX19_04818 0.79 -1.3 223,068 - MPMX19_04818 0.79 +2.1 223,068 - MPMX19_04818 0.79 +0.5 223,068 - MPMX19_04818 0.79 -1.3 223,068 - MPMX19_04818 0.79 -1.7 223,068 - MPMX19_04818 0.79 -0.1 223,175 + -0.6 223,175 + -0.9 223,175 + -1.0 223,175 + -1.5 223,175 + +0.7 223,175 + +0.5 223,176 - -0.2 223,176 - -0.4 223,176 - -2.0 223,176 - +0.7 223,197 - +0.1 223,249 + -0.5 223,249 + -2.0 223,249 + -1.3 223,249 + -2.0 223,249 + +0.2 223,249 + -0.3 223,249 + +0.2 223,249 + -0.4 223,250 - -0.0 223,250 - -0.1 223,250 - +0.3 223,250 - +0.5 223,250 - -0.8 223,252 - -1.8 223,314 - +0.0 223,314 - -0.4 223,332 + +0.1 223,332 + -1.1 223,332 + -0.8 223,332 + -1.0 223,333 - +0.4 223,333 - -0.3 223,333 - -0.8 223,472 + -0.4 223,473 - -0.7 223,473 - +0.1 223,495 + +0.1 223,549 + -1.1 223,549 + -0.1 223,549 + +0.4 223,549 + +1.5 223,550 - -1.6 223,550 - -1.1 223,550 - -0.8 223,550 - -0.2 223,550 - +0.3 223,550 - +1.5 223,550 - -0.8 223,550 - +0.8 223,550 - -0.8 223,643 + MPMX19_04819 0.12 +0.1 223,643 + MPMX19_04819 0.12 -0.9 223,643 + MPMX19_04819 0.12 +0.5 223,643 + MPMX19_04819 0.12 +0.5 223,643 + MPMX19_04819 0.12 +1.5 223,643 + MPMX19_04819 0.12 +0.2 223,643 + MPMX19_04819 0.12 +0.3 223,643 + MPMX19_04819 0.12 -1.2 223,643 + MPMX19_04819 0.12 -0.5 223,643 + MPMX19_04819 0.12 +0.4 223,643 + MPMX19_04819 0.12 +0.6 223,643 + MPMX19_04819 0.12 -0.3 223,643 + MPMX19_04819 0.12 +0.9 223,643 + MPMX19_04819 0.12 -0.4 223,644 - MPMX19_04819 0.12 +0.2 223,644 - MPMX19_04819 0.12 +1.3 223,644 - MPMX19_04819 0.12 -0.1 223,644 - MPMX19_04819 0.12 -0.4 223,644 - MPMX19_04819 0.12 +0.4 223,644 - MPMX19_04819 0.12 +0.9 223,644 - MPMX19_04819 0.12 -1.6 223,644 - MPMX19_04819 0.12 -1.6 223,644 - MPMX19_04819 0.12 -1.0 223,644 - MPMX19_04819 0.12 +1.1 223,644 - MPMX19_04819 0.12 +0.0 223,644 - MPMX19_04819 0.12 -0.8 223,644 - MPMX19_04819 0.12 -0.5 223,644 - MPMX19_04819 0.12 -1.6 223,644 - MPMX19_04819 0.12 -1.1 223,644 - MPMX19_04819 0.12 -1.1 223,644 - MPMX19_04819 0.12 -0.2 223,644 - MPMX19_04819 0.12 -1.2 223,644 - MPMX19_04819 0.12 -1.5 223,644 - MPMX19_04819 0.12 +0.9 223,691 + MPMX19_04819 0.18 +0.0 223,691 + MPMX19_04819 0.18 -2.1 223,691 + MPMX19_04819 0.18 +0.6 223,691 + MPMX19_04819 0.18 +0.2 223,691 + MPMX19_04819 0.18 +0.6 223,691 + MPMX19_04819 0.18 -0.2 223,691 + MPMX19_04819 0.18 -0.7 223,691 + MPMX19_04819 0.18 +0.9 223,691 + MPMX19_04819 0.18 +2.0 223,691 + MPMX19_04819 0.18 -0.8 223,691 + MPMX19_04819 0.18 -0.7 223,692 - MPMX19_04819 0.18 -1.3 223,692 - MPMX19_04819 0.18 -1.3 223,692 - MPMX19_04819 0.18 -0.6 223,692 - MPMX19_04819 0.18 -0.5 223,692 - MPMX19_04819 0.18 -0.5 223,692 - MPMX19_04819 0.18 -0.7 223,692 - MPMX19_04819 0.18 +0.3 223,795 - MPMX19_04819 0.32 -1.3 223,924 + MPMX19_04819 0.48 -1.5 223,925 - MPMX19_04819 0.48 -0.6 224,057 + MPMX19_04819 0.66 -0.3 224,057 + MPMX19_04819 0.66 -0.0 224,057 + MPMX19_04819 0.66 -1.3 224,057 + MPMX19_04819 0.66 +0.2 224,057 + MPMX19_04819 0.66 -1.2 224,057 + MPMX19_04819 0.66 -0.6 224,058 - MPMX19_04819 0.66 -2.1 224,058 - MPMX19_04819 0.66 -0.4 224,058 - MPMX19_04819 0.66 +0.5 224,058 - MPMX19_04819 0.66 -0.5 224,058 - MPMX19_04819 0.66 +0.3 224,058 - MPMX19_04819 0.66 +0.1 224,058 - MPMX19_04819 0.66 +1.3 224,114 + MPMX19_04819 0.73 -2.2 224,114 + MPMX19_04819 0.73 +0.4 224,114 + MPMX19_04819 0.73 +0.0 224,114 + MPMX19_04819 0.73 -1.1 224,114 + MPMX19_04819 0.73 -0.1 224,114 + MPMX19_04819 0.73 -0.2 224,114 + MPMX19_04819 0.73 -0.3 224,114 + MPMX19_04819 0.73 +0.0 224,114 + MPMX19_04819 0.73 +0.5 224,114 + MPMX19_04819 0.73 +0.1 224,114 + MPMX19_04819 0.73 -0.7 224,114 + MPMX19_04819 0.73 +0.2 224,115 - MPMX19_04819 0.73 +0.2 224,115 - MPMX19_04819 0.73 -0.2 224,115 - MPMX19_04819 0.73 -0.1 224,115 - MPMX19_04819 0.73 -0.9 224,115 - MPMX19_04819 0.73 +0.5 224,115 - MPMX19_04819 0.73 -0.7 224,115 - MPMX19_04819 0.73 -0.1 224,115 - MPMX19_04819 0.73 -0.6 224,115 - MPMX19_04819 0.73 +0.8 224,115 - MPMX19_04819 0.73 -0.7 224,115 - MPMX19_04819 0.73 -0.1 224,115 - MPMX19_04819 0.73 +0.0 224,115 - MPMX19_04819 0.73 +0.8
Or see this region's nucleotide sequence