Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04690

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04688 and MPMX19_04689 are separated by 4 nucleotidesMPMX19_04689 and MPMX19_04690 are separated by 52 nucleotidesMPMX19_04690 and MPMX19_04691 are separated by 223 nucleotidesMPMX19_04691 and MPMX19_04692 are separated by 23 nucleotides MPMX19_04688: MPMX19_04688 - Bicarbonate transport ATP-binding protein CmpD, at 74,360 to 75,178 _04688 MPMX19_04689: MPMX19_04689 - Putative aliphatic sulfonates transport permease protein SsuC, at 75,183 to 76,004 _04689 MPMX19_04690: MPMX19_04690 - hypothetical protein, at 76,057 to 77,073 _04690 MPMX19_04691: MPMX19_04691 - hypothetical protein, at 77,297 to 78,025 _04691 MPMX19_04692: MPMX19_04692 - hypothetical protein, at 78,049 to 78,468 _04692 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1at 75.268 kb on + strand, within MPMX19_04689at 75.268 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.326 kb on - strand, within MPMX19_04689at 75.326 kb on - strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.347 kb on - strand, within MPMX19_04689at 75.758 kb on - strand, within MPMX19_04689at 76.077 kb on + strandat 76.109 kb on + strandat 76.109 kb on + strandat 76.110 kb on - strandat 76.154 kb on + strandat 76.154 kb on + strandat 76.154 kb on + strandat 76.154 kb on + strandat 76.155 kb on - strandat 76.155 kb on - strandat 76.155 kb on - strandat 76.211 kb on + strand, within MPMX19_04690at 76.212 kb on - strand, within MPMX19_04690at 76.212 kb on - strand, within MPMX19_04690at 76.212 kb on - strand, within MPMX19_04690at 76.212 kb on - strand, within MPMX19_04690at 76.268 kb on + strand, within MPMX19_04690at 76.268 kb on + strand, within MPMX19_04690at 76.268 kb on + strand, within MPMX19_04690at 76.268 kb on + strand, within MPMX19_04690at 76.268 kb on + strand, within MPMX19_04690at 76.269 kb on - strand, within MPMX19_04690at 76.269 kb on - strand, within MPMX19_04690at 76.269 kb on - strand, within MPMX19_04690at 76.269 kb on - strand, within MPMX19_04690at 76.427 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 77.101 kb on + strandat 77.101 kb on + strandat 77.102 kb on - strandat 77.253 kb on + strandat 77.708 kb on + strand, within MPMX19_04691at 77.708 kb on + strand, within MPMX19_04691at 77.708 kb on + strand, within MPMX19_04691at 77.709 kb on - strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.806 kb on + strand, within MPMX19_04691at 77.828 kb on + strand, within MPMX19_04691at 77.828 kb on + strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 78.042 kb on + strandat 78.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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75,268 + MPMX19_04689 0.10 +0.1
75,268 + MPMX19_04689 0.10 +0.2
75,325 + MPMX19_04689 0.17 -0.3
75,325 + MPMX19_04689 0.17 -1.1
75,325 + MPMX19_04689 0.17 -0.3
75,326 - MPMX19_04689 0.17 -0.6
75,326 - MPMX19_04689 0.17 +1.5
75,328 + MPMX19_04689 0.18 -0.1
75,328 + MPMX19_04689 0.18 -1.3
75,328 + MPMX19_04689 0.18 +0.1
75,328 + MPMX19_04689 0.18 -1.1
75,328 + MPMX19_04689 0.18 -1.1
75,328 + MPMX19_04689 0.18 -0.2
75,328 + MPMX19_04689 0.18 -0.6
75,328 + MPMX19_04689 0.18 -0.8
75,328 + MPMX19_04689 0.18 +0.9
75,328 + MPMX19_04689 0.18 +0.2
75,328 + MPMX19_04689 0.18 -0.2
75,328 + MPMX19_04689 0.18 +0.9
75,328 + MPMX19_04689 0.18 +1.1
75,328 + MPMX19_04689 0.18 -1.9
75,328 + MPMX19_04689 0.18 +0.8
75,328 + MPMX19_04689 0.18 +0.1
75,328 + MPMX19_04689 0.18 +0.5
75,328 + MPMX19_04689 0.18 +0.0
75,328 + MPMX19_04689 0.18 +0.9
75,328 + MPMX19_04689 0.18 -0.3
75,328 + MPMX19_04689 0.18 -0.2
75,328 + MPMX19_04689 0.18 -1.6
75,328 + MPMX19_04689 0.18 +0.3
75,328 + MPMX19_04689 0.18 -1.1
75,328 + MPMX19_04689 0.18 -0.2
75,328 + MPMX19_04689 0.18 -2.1
75,328 + MPMX19_04689 0.18 -3.0
75,329 - MPMX19_04689 0.18 -0.3
75,329 - MPMX19_04689 0.18 -0.5
75,329 - MPMX19_04689 0.18 +0.8
75,329 - MPMX19_04689 0.18 -0.4
75,329 - MPMX19_04689 0.18 +0.6
75,329 - MPMX19_04689 0.18 +0.2
75,329 - MPMX19_04689 0.18 +0.3
75,329 - MPMX19_04689 0.18 -0.8
75,329 - MPMX19_04689 0.18 -2.5
75,329 - MPMX19_04689 0.18 -0.6
75,329 - MPMX19_04689 0.18 -0.2
75,329 - MPMX19_04689 0.18 +0.1
75,329 - MPMX19_04689 0.18 -0.3
75,329 - MPMX19_04689 0.18 +0.9
75,329 - MPMX19_04689 0.18 -0.1
75,329 - MPMX19_04689 0.18 +0.8
75,329 - MPMX19_04689 0.18 -1.1
75,346 + MPMX19_04689 0.20 -0.7
75,346 + MPMX19_04689 0.20 -0.3
75,346 + MPMX19_04689 0.20 +0.4
75,347 - MPMX19_04689 0.20 -0.1
75,758 - MPMX19_04689 0.70 +0.4
76,077 + -0.9
76,109 + +0.8
76,109 + -1.1
76,110 - -0.1
76,154 + -0.1
76,154 + +0.7
76,154 + -0.1
76,154 + -0.6
76,155 - +1.2
76,155 - -0.4
76,155 - -0.2
76,211 + MPMX19_04690 0.15 +0.7
76,212 - MPMX19_04690 0.15 -0.1
76,212 - MPMX19_04690 0.15 -2.2
76,212 - MPMX19_04690 0.15 -0.4
76,212 - MPMX19_04690 0.15 -0.6
76,268 + MPMX19_04690 0.21 -0.9
76,268 + MPMX19_04690 0.21 -0.6
76,268 + MPMX19_04690 0.21 -0.4
76,268 + MPMX19_04690 0.21 +0.8
76,268 + MPMX19_04690 0.21 +0.1
76,269 - MPMX19_04690 0.21 -0.2
76,269 - MPMX19_04690 0.21 -0.1
76,269 - MPMX19_04690 0.21 -0.8
76,269 - MPMX19_04690 0.21 +0.2
76,427 + MPMX19_04690 0.36 -0.5
76,811 + MPMX19_04690 0.74 -1.6
76,811 + MPMX19_04690 0.74 -1.8
76,811 + MPMX19_04690 0.74 +0.8
76,811 + MPMX19_04690 0.74 -0.3
76,811 + MPMX19_04690 0.74 -0.5
76,811 + MPMX19_04690 0.74 -0.1
76,811 + MPMX19_04690 0.74 -0.2
76,811 + MPMX19_04690 0.74 -1.6
76,811 + MPMX19_04690 0.74 -0.1
76,811 + MPMX19_04690 0.74 -0.6
76,811 + MPMX19_04690 0.74 +0.5
76,811 + MPMX19_04690 0.74 +0.7
76,811 + MPMX19_04690 0.74 -1.1
76,811 + MPMX19_04690 0.74 -1.6
76,811 + MPMX19_04690 0.74 -0.8
76,811 + MPMX19_04690 0.74 -0.5
76,811 + MPMX19_04690 0.74 -0.7
76,811 + MPMX19_04690 0.74 -2.4
76,812 - MPMX19_04690 0.74 -0.2
76,812 - MPMX19_04690 0.74 +1.5
76,812 - MPMX19_04690 0.74 +0.5
76,812 - MPMX19_04690 0.74 +1.2
76,812 - MPMX19_04690 0.74 +1.3
76,812 - MPMX19_04690 0.74 -0.8
76,812 - MPMX19_04690 0.74 -2.1
76,812 - MPMX19_04690 0.74 +1.2
76,812 - MPMX19_04690 0.74 -0.4
76,812 - MPMX19_04690 0.74 -0.7
76,812 - MPMX19_04690 0.74 +1.2
76,812 - MPMX19_04690 0.74 +0.8
76,812 - MPMX19_04690 0.74 -2.2
76,820 + MPMX19_04690 0.75 +0.4
76,820 + MPMX19_04690 0.75 -1.9
76,820 + MPMX19_04690 0.75 -0.5
76,820 + MPMX19_04690 0.75 +1.2
76,820 + MPMX19_04690 0.75 +1.0
76,820 + MPMX19_04690 0.75 -0.2
76,820 + MPMX19_04690 0.75 -1.4
76,820 + MPMX19_04690 0.75 -0.4
76,820 + MPMX19_04690 0.75 -0.3
76,820 + MPMX19_04690 0.75 +0.1
76,821 - MPMX19_04690 0.75 +0.8
76,821 - MPMX19_04690 0.75 -0.1
76,821 - MPMX19_04690 0.75 +0.5
76,821 - MPMX19_04690 0.75 -0.3
76,821 - MPMX19_04690 0.75 -1.6
76,821 - MPMX19_04690 0.75 -1.6
76,821 - MPMX19_04690 0.75 -0.2
76,821 - MPMX19_04690 0.75 -0.3
76,821 - MPMX19_04690 0.75 -1.8
77,101 + -2.6
77,101 + -0.9
77,102 - -0.5
77,253 + -1.9
77,708 + MPMX19_04691 0.56 -0.6
77,708 + MPMX19_04691 0.56 +1.0
77,708 + MPMX19_04691 0.56 +0.8
77,709 - MPMX19_04691 0.57 +0.2
77,780 + MPMX19_04691 0.66 +1.5
77,780 + MPMX19_04691 0.66 -1.6
77,780 + MPMX19_04691 0.66 -1.5
77,780 + MPMX19_04691 0.66 -0.8
77,780 + MPMX19_04691 0.66 -2.5
77,780 + MPMX19_04691 0.66 -0.7
77,780 + MPMX19_04691 0.66 +0.1
77,780 + MPMX19_04691 0.66 -0.3
77,780 + MPMX19_04691 0.66 -0.8
77,781 - MPMX19_04691 0.66 -2.1
77,781 - MPMX19_04691 0.66 +0.5
77,781 - MPMX19_04691 0.66 +0.1
77,781 - MPMX19_04691 0.66 -0.4
77,781 - MPMX19_04691 0.66 -0.5
77,781 - MPMX19_04691 0.66 -1.2
77,781 - MPMX19_04691 0.66 -0.0
77,781 - MPMX19_04691 0.66 +0.2
77,806 + MPMX19_04691 0.70 -0.2
77,828 + MPMX19_04691 0.73 -0.9
77,828 + MPMX19_04691 0.73 -1.8
77,829 - MPMX19_04691 0.73 +1.1
77,829 - MPMX19_04691 0.73 -0.4
77,829 - MPMX19_04691 0.73 +0.2
77,829 - MPMX19_04691 0.73 +0.7
77,829 - MPMX19_04691 0.73 -1.3
77,829 - MPMX19_04691 0.73 -0.8
77,829 - MPMX19_04691 0.73 +0.7
77,829 - MPMX19_04691 0.73 -1.1
78,042 + +0.2
78,042 + +0.5

Or see this region's nucleotide sequence