Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04150

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04149 and MPMX19_04150 are separated by 13 nucleotidesMPMX19_04150 and MPMX19_04151 are separated by 51 nucleotides MPMX19_04149: MPMX19_04149 - hypothetical protein, at 460,583 to 461,809 _04149 MPMX19_04150: MPMX19_04150 - hypothetical protein, at 461,823 to 462,395 _04150 MPMX19_04151: MPMX19_04151 - UDP-glucose 4-epimerase, at 462,447 to 463,460 _04151 Position (kb) 461 462 463Strain fitness (log2 ratio) -2 -1 0 1at 460.853 kb on + strand, within MPMX19_04149at 460.853 kb on + strand, within MPMX19_04149at 461.781 kb on + strandat 461.782 kb on - strandat 461.782 kb on - strandat 461.845 kb on + strandat 461.846 kb on - strandat 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.894 kb on - strand, within MPMX19_04150at 461.894 kb on - strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.053 kb on - strand, within MPMX19_04150at 462.053 kb on - strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.106 kb on + strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.232 kb on + strand, within MPMX19_04150at 462.232 kb on + strand, within MPMX19_04150at 462.341 kb on + strandat 462.342 kb on - strandat 462.431 kb on - strandat 462.685 kb on + strand, within MPMX19_04151at 462.685 kb on + strand, within MPMX19_04151at 462.685 kb on + strand, within MPMX19_04151at 462.686 kb on - strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.710 kb on - strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.946 kb on + strand, within MPMX19_04151at 462.946 kb on + strand, within MPMX19_04151at 462.947 kb on - strand, within MPMX19_04151at 462.947 kb on - strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.184 kb on - strand, within MPMX19_04151at 463.184 kb on - strand, within MPMX19_04151at 463.184 kb on - strand, within MPMX19_04151

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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460,853 + MPMX19_04149 0.22 -0.7
460,853 + MPMX19_04149 0.22 -0.8
461,781 + +0.3
461,782 - -0.7
461,782 - -0.2
461,845 + -1.7
461,846 - -0.6
461,893 + MPMX19_04150 0.12 +0.0
461,893 + MPMX19_04150 0.12 -1.3
461,893 + MPMX19_04150 0.12 +0.4
461,893 + MPMX19_04150 0.12 -0.1
461,893 + MPMX19_04150 0.12 -2.7
461,894 - MPMX19_04150 0.12 -2.4
461,894 - MPMX19_04150 0.12 -0.1
462,052 + MPMX19_04150 0.40 -1.4
462,052 + MPMX19_04150 0.40 +0.4
462,052 + MPMX19_04150 0.40 -0.1
462,052 + MPMX19_04150 0.40 -0.7
462,052 + MPMX19_04150 0.40 -0.6
462,053 - MPMX19_04150 0.40 -1.1
462,053 - MPMX19_04150 0.40 -0.6
462,082 + MPMX19_04150 0.45 -0.3
462,082 + MPMX19_04150 0.45 -0.1
462,082 + MPMX19_04150 0.45 -0.3
462,082 + MPMX19_04150 0.45 -0.2
462,082 + MPMX19_04150 0.45 +0.2
462,083 - MPMX19_04150 0.45 +0.2
462,083 - MPMX19_04150 0.45 -2.0
462,083 - MPMX19_04150 0.45 -0.1
462,083 - MPMX19_04150 0.45 -0.0
462,083 - MPMX19_04150 0.45 -0.5
462,083 - MPMX19_04150 0.45 +0.4
462,103 + MPMX19_04150 0.49 -1.8
462,103 + MPMX19_04150 0.49 +0.5
462,103 + MPMX19_04150 0.49 -0.6
462,103 + MPMX19_04150 0.49 -1.8
462,103 + MPMX19_04150 0.49 +0.1
462,103 + MPMX19_04150 0.49 +0.2
462,103 + MPMX19_04150 0.49 -0.1
462,103 + MPMX19_04150 0.49 -0.7
462,103 + MPMX19_04150 0.49 -1.6
462,103 + MPMX19_04150 0.49 +0.7
462,104 - MPMX19_04150 0.49 +0.5
462,104 - MPMX19_04150 0.49 -1.3
462,104 - MPMX19_04150 0.49 -0.9
462,104 - MPMX19_04150 0.49 +0.6
462,104 - MPMX19_04150 0.49 +0.3
462,104 - MPMX19_04150 0.49 -0.8
462,104 - MPMX19_04150 0.49 -2.5
462,104 - MPMX19_04150 0.49 -0.8
462,104 - MPMX19_04150 0.49 -0.1
462,104 - MPMX19_04150 0.49 +0.8
462,104 - MPMX19_04150 0.49 -0.5
462,104 - MPMX19_04150 0.49 +0.1
462,104 - MPMX19_04150 0.49 -0.4
462,104 - MPMX19_04150 0.49 +0.3
462,104 - MPMX19_04150 0.49 -1.1
462,106 + MPMX19_04150 0.49 +0.6
462,107 - MPMX19_04150 0.50 +0.7
462,107 - MPMX19_04150 0.50 -0.6
462,107 - MPMX19_04150 0.50 -1.1
462,107 - MPMX19_04150 0.50 +0.8
462,107 - MPMX19_04150 0.50 -0.4
462,232 + MPMX19_04150 0.71 -2.0
462,232 + MPMX19_04150 0.71 +1.1
462,341 + +1.2
462,342 - -1.8
462,431 - +0.3
462,685 + MPMX19_04151 0.23 -1.2
462,685 + MPMX19_04151 0.23 -0.8
462,685 + MPMX19_04151 0.23 +0.8
462,686 - MPMX19_04151 0.24 +1.0
462,709 + MPMX19_04151 0.26 -0.0
462,709 + MPMX19_04151 0.26 -1.7
462,709 + MPMX19_04151 0.26 -1.4
462,709 + MPMX19_04151 0.26 +0.3
462,710 - MPMX19_04151 0.26 -0.6
462,781 + MPMX19_04151 0.33 -0.8
462,781 + MPMX19_04151 0.33 -0.2
462,781 + MPMX19_04151 0.33 -0.7
462,781 + MPMX19_04151 0.33 -2.2
462,781 + MPMX19_04151 0.33 +0.0
462,781 + MPMX19_04151 0.33 +0.5
462,781 + MPMX19_04151 0.33 -0.2
462,781 + MPMX19_04151 0.33 -0.1
462,782 - MPMX19_04151 0.33 +0.2
462,782 - MPMX19_04151 0.33 -0.0
462,782 - MPMX19_04151 0.33 +0.1
462,782 - MPMX19_04151 0.33 -0.4
462,782 - MPMX19_04151 0.33 -0.5
462,782 - MPMX19_04151 0.33 -0.3
462,782 - MPMX19_04151 0.33 -0.4
462,782 - MPMX19_04151 0.33 -0.1
462,782 - MPMX19_04151 0.33 -1.7
462,782 - MPMX19_04151 0.33 -0.5
462,782 - MPMX19_04151 0.33 +0.2
462,782 - MPMX19_04151 0.33 -0.8
462,782 - MPMX19_04151 0.33 -0.5
462,782 - MPMX19_04151 0.33 -0.1
462,782 - MPMX19_04151 0.33 -0.2
462,782 - MPMX19_04151 0.33 +0.8
462,814 + MPMX19_04151 0.36 -0.1
462,814 + MPMX19_04151 0.36 -0.2
462,814 + MPMX19_04151 0.36 -0.6
462,814 + MPMX19_04151 0.36 -0.9
462,814 + MPMX19_04151 0.36 +0.6
462,815 - MPMX19_04151 0.36 +0.0
462,815 - MPMX19_04151 0.36 +0.8
462,815 - MPMX19_04151 0.36 +0.4
462,815 - MPMX19_04151 0.36 +1.3
462,815 - MPMX19_04151 0.36 -0.2
462,946 + MPMX19_04151 0.49 +0.5
462,946 + MPMX19_04151 0.49 -1.7
462,947 - MPMX19_04151 0.49 -1.8
462,947 - MPMX19_04151 0.49 -1.1
463,183 + MPMX19_04151 0.73 -1.2
463,183 + MPMX19_04151 0.73 +0.8
463,183 + MPMX19_04151 0.73 -0.6
463,183 + MPMX19_04151 0.73 -0.3
463,184 - MPMX19_04151 0.73 -0.1
463,184 - MPMX19_04151 0.73 -1.7
463,184 - MPMX19_04151 0.73 -0.4

Or see this region's nucleotide sequence