Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03887 and MPMX19_03888 are separated by 196 nucleotides MPMX19_03888 and MPMX19_03889 are separated by 57 nucleotides
MPMX19_03887: MPMX19_03887 - Photosystem I assembly protein Ycf3, at 160,318 to 162,240
_03887
MPMX19_03888: MPMX19_03888 - Glutathione hydrolase-like YwrD proenzyme, at 162,437 to 164,008
_03888
MPMX19_03889: MPMX19_03889 - hypothetical protein, at 164,066 to 165,088
_03889
Position (kb) 162
163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.552 kb on - strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.717 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.976 kb on - strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 162.116 kb on + strand at 162.116 kb on + strand at 162.117 kb on - strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.148 kb on - strand at 162.148 kb on - strand at 162.270 kb on - strand at 162.283 kb on + strand at 162.283 kb on + strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.409 kb on + strand at 162.783 kb on + strand, within MPMX19_03888 at 162.783 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.175 kb on + strand, within MPMX19_03888 at 163.176 kb on - strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.602 kb on + strand, within MPMX19_03888 at 163.603 kb on - strand, within MPMX19_03888 at 163.603 kb on - strand, within MPMX19_03888 at 163.603 kb on - strand, within MPMX19_03888 at 163.680 kb on + strand, within MPMX19_03888 at 163.680 kb on + strand, within MPMX19_03888 at 163.680 kb on + strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.764 kb on + strand, within MPMX19_03888 at 163.942 kb on + strand at 163.943 kb on - strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.160 kb on + strand at 164.160 kb on + strand at 164.160 kb on + strand at 164.160 kb on + strand at 164.161 kb on - strand at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.260 kb on - strand, within MPMX19_03889 at 164.310 kb on + strand, within MPMX19_03889 at 164.310 kb on + strand, within MPMX19_03889 at 164.311 kb on - strand, within MPMX19_03889 at 164.448 kb on + strand, within MPMX19_03889 at 164.448 kb on + strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.488 kb on - strand, within MPMX19_03889 at 164.488 kb on - strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.862 kb on + strand, within MPMX19_03889 at 164.862 kb on + strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.946 kb on + strand, within MPMX19_03889 at 164.946 kb on + strand, within MPMX19_03889 at 164.946 kb on + strand, within MPMX19_03889 at 164.947 kb on - strand, within MPMX19_03889 at 164.947 kb on - strand, within MPMX19_03889 at 164.947 kb on - strand, within MPMX19_03889
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 161,456 + MPMX19_03887 0.59 +1.0 161,456 + MPMX19_03887 0.59 +1.0 161,456 + MPMX19_03887 0.59 -0.3 161,456 + MPMX19_03887 0.59 -0.3 161,456 + MPMX19_03887 0.59 -0.8 161,457 - MPMX19_03887 0.59 -0.3 161,457 - MPMX19_03887 0.59 +0.2 161,457 - MPMX19_03887 0.59 -0.0 161,457 - MPMX19_03887 0.59 -0.5 161,457 - MPMX19_03887 0.59 +0.1 161,457 - MPMX19_03887 0.59 +0.2 161,457 - MPMX19_03887 0.59 -0.5 161,472 - MPMX19_03887 0.60 -0.0 161,472 - MPMX19_03887 0.60 +0.2 161,552 - MPMX19_03887 0.64 +0.5 161,675 + MPMX19_03887 0.71 -0.0 161,675 + MPMX19_03887 0.71 +0.1 161,675 + MPMX19_03887 0.71 +1.0 161,675 + MPMX19_03887 0.71 +1.1 161,675 + MPMX19_03887 0.71 -0.2 161,675 + MPMX19_03887 0.71 +0.7 161,676 - MPMX19_03887 0.71 -0.3 161,676 - MPMX19_03887 0.71 -1.9 161,676 - MPMX19_03887 0.71 -0.9 161,676 - MPMX19_03887 0.71 -0.2 161,676 - MPMX19_03887 0.71 +0.8 161,717 + MPMX19_03887 0.73 +0.5 161,912 + MPMX19_03887 0.83 -0.4 161,912 + MPMX19_03887 0.83 -0.5 161,912 + MPMX19_03887 0.83 +0.4 161,913 - MPMX19_03887 0.83 -0.0 161,913 - MPMX19_03887 0.83 -0.3 161,913 - MPMX19_03887 0.83 +0.5 161,913 - MPMX19_03887 0.83 -1.6 161,976 - MPMX19_03887 0.86 -0.8 161,978 + MPMX19_03887 0.86 +0.3 161,978 + MPMX19_03887 0.86 -1.3 161,978 + MPMX19_03887 0.86 +0.3 161,978 + MPMX19_03887 0.86 -0.3 161,978 + MPMX19_03887 0.86 -0.8 161,978 + MPMX19_03887 0.86 -0.5 161,978 + MPMX19_03887 0.86 -1.6 161,978 + MPMX19_03887 0.86 -0.1 161,978 + MPMX19_03887 0.86 +0.2 161,978 + MPMX19_03887 0.86 -0.8 161,979 - MPMX19_03887 0.86 +2.5 161,979 - MPMX19_03887 0.86 +0.4 161,979 - MPMX19_03887 0.86 -0.6 161,979 - MPMX19_03887 0.86 -0.6 161,979 - MPMX19_03887 0.86 +1.3 161,979 - MPMX19_03887 0.86 +0.1 161,979 - MPMX19_03887 0.86 +0.2 161,979 - MPMX19_03887 0.86 +0.5 162,116 + -0.6 162,116 + +0.7 162,117 - -0.8 162,147 + +0.5 162,147 + -0.6 162,147 + -0.9 162,148 - -0.5 162,148 - +1.3 162,270 - -0.4 162,283 + -1.8 162,283 + -0.2 162,284 - +0.5 162,284 - -0.2 162,284 - -0.6 162,284 - -0.8 162,284 - -0.3 162,284 - +0.3 162,284 - +0.1 162,284 - -0.5 162,284 - -0.5 162,284 - +0.2 162,287 + +0.3 162,287 + -2.0 162,287 + +0.0 162,287 + +0.1 162,287 + -2.0 162,287 + -1.0 162,288 - -0.6 162,288 - -0.2 162,288 - -0.0 162,409 + -0.8 162,783 + MPMX19_03888 0.22 +0.0 162,783 + MPMX19_03888 0.22 +0.2 162,834 + MPMX19_03888 0.25 -0.2 162,834 + MPMX19_03888 0.25 -0.2 162,834 + MPMX19_03888 0.25 +0.2 162,834 + MPMX19_03888 0.25 -0.5 162,834 + MPMX19_03888 0.25 +1.5 162,834 + MPMX19_03888 0.25 -1.3 162,834 + MPMX19_03888 0.25 -0.8 162,834 + MPMX19_03888 0.25 +1.4 162,835 - MPMX19_03888 0.25 -0.3 162,835 - MPMX19_03888 0.25 -1.5 162,835 - MPMX19_03888 0.25 +1.0 162,835 - MPMX19_03888 0.25 +1.5 162,835 - MPMX19_03888 0.25 +1.1 162,835 - MPMX19_03888 0.25 +0.3 162,835 - MPMX19_03888 0.25 -1.0 162,957 + MPMX19_03888 0.33 +0.4 162,957 + MPMX19_03888 0.33 +0.7 162,957 + MPMX19_03888 0.33 +0.1 162,957 + MPMX19_03888 0.33 +0.8 162,957 + MPMX19_03888 0.33 +0.3 162,957 + MPMX19_03888 0.33 +0.4 162,957 + MPMX19_03888 0.33 -1.6 162,958 - MPMX19_03888 0.33 -0.4 162,958 - MPMX19_03888 0.33 +2.0 162,958 - MPMX19_03888 0.33 -0.2 162,958 - MPMX19_03888 0.33 -0.5 162,958 - MPMX19_03888 0.33 +1.5 163,011 + MPMX19_03888 0.37 -1.7 163,011 + MPMX19_03888 0.37 -0.0 163,011 + MPMX19_03888 0.37 +0.5 163,011 + MPMX19_03888 0.37 -0.3 163,011 + MPMX19_03888 0.37 +0.5 163,011 + MPMX19_03888 0.37 -1.3 163,012 - MPMX19_03888 0.37 -1.0 163,012 - MPMX19_03888 0.37 +0.2 163,032 + MPMX19_03888 0.38 -1.8 163,032 + MPMX19_03888 0.38 -0.5 163,033 - MPMX19_03888 0.38 -0.8 163,033 - MPMX19_03888 0.38 -0.3 163,175 + MPMX19_03888 0.47 -1.3 163,176 - MPMX19_03888 0.47 +0.7 163,434 + MPMX19_03888 0.63 +0.3 163,434 + MPMX19_03888 0.63 +0.7 163,434 + MPMX19_03888 0.63 -0.7 163,434 + MPMX19_03888 0.63 +0.1 163,434 + MPMX19_03888 0.63 -1.3 163,434 + MPMX19_03888 0.63 -0.2 163,434 + MPMX19_03888 0.63 -0.3 163,434 + MPMX19_03888 0.63 -1.4 163,434 + MPMX19_03888 0.63 -2.2 163,435 - MPMX19_03888 0.63 +1.3 163,435 - MPMX19_03888 0.63 -0.1 163,435 - MPMX19_03888 0.63 +0.3 163,435 - MPMX19_03888 0.63 -1.0 163,435 - MPMX19_03888 0.63 +0.5 163,435 - MPMX19_03888 0.63 +0.7 163,602 + MPMX19_03888 0.74 +0.7 163,603 - MPMX19_03888 0.74 -2.0 163,603 - MPMX19_03888 0.74 +2.1 163,603 - MPMX19_03888 0.74 -0.3 163,680 + MPMX19_03888 0.79 -0.5 163,680 + MPMX19_03888 0.79 +0.7 163,680 + MPMX19_03888 0.79 -1.3 163,681 - MPMX19_03888 0.79 +0.0 163,681 - MPMX19_03888 0.79 +0.6 163,681 - MPMX19_03888 0.79 -0.6 163,681 - MPMX19_03888 0.79 -1.1 163,681 - MPMX19_03888 0.79 +1.0 163,681 - MPMX19_03888 0.79 +0.1 163,681 - MPMX19_03888 0.79 +0.7 163,764 + MPMX19_03888 0.84 +0.5 163,942 + -0.0 163,943 - -1.9 164,079 + -0.5 164,079 + -0.5 164,079 + +1.0 164,079 + +1.0 164,079 + -0.1 164,079 + +1.2 164,079 + +0.1 164,079 + -0.3 164,079 + -0.2 164,079 + -0.7 164,079 + -0.9 164,079 + -0.0 164,079 + +0.1 164,079 + -1.8 164,079 + +0.2 164,080 - -0.4 164,080 - +0.2 164,080 - +0.8 164,080 - +0.2 164,080 - -0.9 164,080 - -0.1 164,080 - +0.9 164,080 - -0.8 164,080 - -0.0 164,160 + -1.3 164,160 + -0.3 164,160 + +0.1 164,160 + +0.5 164,161 - -0.4 164,259 + MPMX19_03889 0.19 -2.8 164,259 + MPMX19_03889 0.19 -0.8 164,259 + MPMX19_03889 0.19 -0.8 164,259 + MPMX19_03889 0.19 -0.9 164,259 + MPMX19_03889 0.19 +0.2 164,260 - MPMX19_03889 0.19 -0.5 164,310 + MPMX19_03889 0.24 -1.0 164,310 + MPMX19_03889 0.24 -2.3 164,311 - MPMX19_03889 0.24 +0.4 164,448 + MPMX19_03889 0.37 +0.5 164,448 + MPMX19_03889 0.37 -0.7 164,449 - MPMX19_03889 0.37 +0.3 164,449 - MPMX19_03889 0.37 -1.3 164,449 - MPMX19_03889 0.37 -0.7 164,449 - MPMX19_03889 0.37 +0.2 164,449 - MPMX19_03889 0.37 -1.8 164,449 - MPMX19_03889 0.37 -1.0 164,487 + MPMX19_03889 0.41 -1.3 164,487 + MPMX19_03889 0.41 +0.0 164,487 + MPMX19_03889 0.41 -0.8 164,487 + MPMX19_03889 0.41 -1.8 164,487 + MPMX19_03889 0.41 +0.1 164,488 - MPMX19_03889 0.41 -1.4 164,488 - MPMX19_03889 0.41 +0.8 164,784 + MPMX19_03889 0.70 -0.5 164,784 + MPMX19_03889 0.70 +0.5 164,784 + MPMX19_03889 0.70 +0.1 164,784 + MPMX19_03889 0.70 +0.4 164,784 + MPMX19_03889 0.70 +0.2 164,784 + MPMX19_03889 0.70 +0.7 164,785 - MPMX19_03889 0.70 -0.5 164,785 - MPMX19_03889 0.70 -0.5 164,785 - MPMX19_03889 0.70 +0.4 164,785 - MPMX19_03889 0.70 -2.2 164,785 - MPMX19_03889 0.70 +1.0 164,862 + MPMX19_03889 0.78 +0.4 164,862 + MPMX19_03889 0.78 -0.0 164,863 - MPMX19_03889 0.78 -0.2 164,863 - MPMX19_03889 0.78 +0.3 164,863 - MPMX19_03889 0.78 -0.3 164,863 - MPMX19_03889 0.78 -1.2 164,946 + MPMX19_03889 0.86 -0.5 164,946 + MPMX19_03889 0.86 -0.5 164,946 + MPMX19_03889 0.86 -0.5 164,947 - MPMX19_03889 0.86 +0.1 164,947 - MPMX19_03889 0.86 -0.2 164,947 - MPMX19_03889 0.86 -0.5
Or see this region's nucleotide sequence