Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03796

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03795 and MPMX19_03796 are separated by 304 nucleotidesMPMX19_03796 and MPMX19_03797 overlap by 29 nucleotides MPMX19_03795: MPMX19_03795 - hypothetical protein, at 29,546 to 31,087 _03795 MPMX19_03796: MPMX19_03796 - hypothetical protein, at 31,392 to 32,138 _03796 MPMX19_03797: MPMX19_03797 - hypothetical protein, at 32,110 to 33,336 _03797 Position (kb) 31 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1at 30.401 kb on + strand, within MPMX19_03795at 30.401 kb on + strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 31.217 kb on + strandat 31.217 kb on + strandat 31.218 kb on - strandat 31.218 kb on - strandat 31.218 kb on - strandat 31.224 kb on + strandat 31.224 kb on + strandat 31.446 kb on + strandat 31.446 kb on + strandat 31.447 kb on - strandat 31.447 kb on - strandat 31.452 kb on + strandat 31.452 kb on + strandat 31.453 kb on - strandat 31.453 kb on - strandat 31.557 kb on + strand, within MPMX19_03796at 31.557 kb on + strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.602 kb on + strand, within MPMX19_03796at 31.602 kb on + strand, within MPMX19_03796at 31.602 kb on + strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.857 kb on + strand, within MPMX19_03796at 31.857 kb on + strand, within MPMX19_03796at 31.858 kb on - strand, within MPMX19_03796at 31.858 kb on - strand, within MPMX19_03796at 31.858 kb on - strand, within MPMX19_03796at 31.878 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.926 kb on + strand, within MPMX19_03796at 31.926 kb on + strand, within MPMX19_03796at 31.926 kb on + strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 32.031 kb on + strand, within MPMX19_03796at 32.031 kb on + strand, within MPMX19_03796at 32.032 kb on - strand, within MPMX19_03796at 32.088 kb on + strandat 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.362 kb on + strand, within MPMX19_03797at 32.363 kb on - strand, within MPMX19_03797at 32.363 kb on - strand, within MPMX19_03797at 32.363 kb on - strand, within MPMX19_03797at 32.363 kb on - strand, within MPMX19_03797at 32.363 kb on - strand, within MPMX19_03797at 32.363 kb on - strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.398 kb on + strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.399 kb on - strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.783 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.864 kb on + strand, within MPMX19_03797at 32.864 kb on + strand, within MPMX19_03797at 32.864 kb on + strand, within MPMX19_03797at 32.865 kb on - strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 33.003 kb on + strand, within MPMX19_03797at 33.003 kb on + strand, within MPMX19_03797at 33.004 kb on - strand, within MPMX19_03797at 33.011 kb on + strand, within MPMX19_03797at 33.082 kb on + strand, within MPMX19_03797at 33.082 kb on + strand, within MPMX19_03797at 33.083 kb on - strand, within MPMX19_03797at 33.083 kb on - strand, within MPMX19_03797

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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30,401 + MPMX19_03795 0.55 +0.3
30,401 + MPMX19_03795 0.55 -1.5
30,402 - MPMX19_03795 0.56 -0.4
30,402 - MPMX19_03795 0.56 -0.8
30,402 - MPMX19_03795 0.56 -0.5
30,402 - MPMX19_03795 0.56 -1.7
30,402 - MPMX19_03795 0.56 +1.7
30,402 - MPMX19_03795 0.56 -1.5
30,402 - MPMX19_03795 0.56 -0.3
30,402 - MPMX19_03795 0.56 +0.5
30,402 - MPMX19_03795 0.56 -0.0
31,217 + -0.5
31,217 + +0.5
31,218 - -0.5
31,218 - -1.2
31,218 - +0.1
31,224 + -1.3
31,224 + -0.2
31,446 + -0.7
31,446 + +0.2
31,447 - -0.8
31,447 - +0.8
31,452 + +0.7
31,452 + +0.8
31,453 - +0.1
31,453 - +0.3
31,557 + MPMX19_03796 0.22 +0.7
31,557 + MPMX19_03796 0.22 +0.7
31,558 - MPMX19_03796 0.22 -1.3
31,558 - MPMX19_03796 0.22 +0.5
31,558 - MPMX19_03796 0.22 +1.5
31,558 - MPMX19_03796 0.22 -1.0
31,558 - MPMX19_03796 0.22 -2.0
31,558 - MPMX19_03796 0.22 -0.1
31,558 - MPMX19_03796 0.22 +1.4
31,558 - MPMX19_03796 0.22 -0.6
31,584 + MPMX19_03796 0.26 -0.8
31,584 + MPMX19_03796 0.26 -0.9
31,584 + MPMX19_03796 0.26 +0.2
31,584 + MPMX19_03796 0.26 +0.8
31,584 + MPMX19_03796 0.26 +0.3
31,584 + MPMX19_03796 0.26 +0.9
31,584 + MPMX19_03796 0.26 -0.4
31,584 + MPMX19_03796 0.26 -1.0
31,585 - MPMX19_03796 0.26 +0.7
31,585 - MPMX19_03796 0.26 +0.7
31,585 - MPMX19_03796 0.26 -0.8
31,585 - MPMX19_03796 0.26 -0.1
31,585 - MPMX19_03796 0.26 -0.1
31,585 - MPMX19_03796 0.26 -0.5
31,602 + MPMX19_03796 0.28 -1.0
31,602 + MPMX19_03796 0.28 -0.1
31,602 + MPMX19_03796 0.28 -0.3
31,603 - MPMX19_03796 0.28 -1.6
31,603 - MPMX19_03796 0.28 -1.0
31,603 - MPMX19_03796 0.28 -0.2
31,603 - MPMX19_03796 0.28 -1.5
31,603 - MPMX19_03796 0.28 -0.8
31,603 - MPMX19_03796 0.28 -1.8
31,767 + MPMX19_03796 0.50 -0.7
31,767 + MPMX19_03796 0.50 -0.1
31,767 + MPMX19_03796 0.50 -0.9
31,767 + MPMX19_03796 0.50 -0.6
31,767 + MPMX19_03796 0.50 -0.8
31,767 + MPMX19_03796 0.50 -0.9
31,767 + MPMX19_03796 0.50 -1.5
31,767 + MPMX19_03796 0.50 -0.9
31,767 + MPMX19_03796 0.50 -0.6
31,767 + MPMX19_03796 0.50 -1.4
31,767 + MPMX19_03796 0.50 -1.5
31,767 + MPMX19_03796 0.50 +0.5
31,767 + MPMX19_03796 0.50 -2.5
31,767 + MPMX19_03796 0.50 -1.0
31,768 - MPMX19_03796 0.50 -0.0
31,768 - MPMX19_03796 0.50 -0.8
31,768 - MPMX19_03796 0.50 +0.1
31,768 - MPMX19_03796 0.50 -1.5
31,768 - MPMX19_03796 0.50 -0.3
31,768 - MPMX19_03796 0.50 -0.6
31,768 - MPMX19_03796 0.50 +0.3
31,768 - MPMX19_03796 0.50 -0.8
31,768 - MPMX19_03796 0.50 -0.9
31,768 - MPMX19_03796 0.50 -1.7
31,779 + MPMX19_03796 0.52 +0.4
31,779 + MPMX19_03796 0.52 +0.3
31,779 + MPMX19_03796 0.52 -0.0
31,779 + MPMX19_03796 0.52 -1.1
31,779 + MPMX19_03796 0.52 -1.9
31,779 + MPMX19_03796 0.52 -0.5
31,779 + MPMX19_03796 0.52 -0.9
31,779 + MPMX19_03796 0.52 -1.0
31,779 + MPMX19_03796 0.52 +0.2
31,780 - MPMX19_03796 0.52 -1.3
31,780 - MPMX19_03796 0.52 -1.8
31,780 - MPMX19_03796 0.52 +1.2
31,780 - MPMX19_03796 0.52 -1.9
31,780 - MPMX19_03796 0.52 -0.6
31,857 + MPMX19_03796 0.62 -1.5
31,857 + MPMX19_03796 0.62 +0.3
31,858 - MPMX19_03796 0.62 -1.0
31,858 - MPMX19_03796 0.62 -0.6
31,858 - MPMX19_03796 0.62 -2.0
31,878 + MPMX19_03796 0.65 -0.8
31,905 + MPMX19_03796 0.69 -1.1
31,905 + MPMX19_03796 0.69 -1.5
31,905 + MPMX19_03796 0.69 +0.5
31,905 + MPMX19_03796 0.69 -0.6
31,905 + MPMX19_03796 0.69 +0.1
31,905 + MPMX19_03796 0.69 +0.5
31,905 + MPMX19_03796 0.69 +0.0
31,906 - MPMX19_03796 0.69 -0.0
31,906 - MPMX19_03796 0.69 -0.0
31,906 - MPMX19_03796 0.69 -0.0
31,906 - MPMX19_03796 0.69 -0.2
31,906 - MPMX19_03796 0.69 +0.1
31,906 - MPMX19_03796 0.69 +0.6
31,906 - MPMX19_03796 0.69 +0.3
31,926 + MPMX19_03796 0.71 +0.3
31,926 + MPMX19_03796 0.71 -0.5
31,926 + MPMX19_03796 0.71 +1.1
31,927 - MPMX19_03796 0.72 -0.8
31,927 - MPMX19_03796 0.72 -0.0
31,927 - MPMX19_03796 0.72 -0.0
31,927 - MPMX19_03796 0.72 -1.4
32,031 + MPMX19_03796 0.86 +0.5
32,031 + MPMX19_03796 0.86 -1.3
32,032 - MPMX19_03796 0.86 -0.6
32,088 + -2.4
32,362 + MPMX19_03797 0.21 +0.1
32,362 + MPMX19_03797 0.21 +1.4
32,362 + MPMX19_03797 0.21 -0.5
32,362 + MPMX19_03797 0.21 -0.5
32,362 + MPMX19_03797 0.21 +0.1
32,362 + MPMX19_03797 0.21 +1.0
32,362 + MPMX19_03797 0.21 -0.3
32,362 + MPMX19_03797 0.21 -0.9
32,362 + MPMX19_03797 0.21 -0.6
32,363 - MPMX19_03797 0.21 -2.0
32,363 - MPMX19_03797 0.21 -0.0
32,363 - MPMX19_03797 0.21 -0.1
32,363 - MPMX19_03797 0.21 -0.9
32,363 - MPMX19_03797 0.21 +0.2
32,363 - MPMX19_03797 0.21 +0.4
32,398 + MPMX19_03797 0.23 -1.5
32,398 + MPMX19_03797 0.23 +0.8
32,398 + MPMX19_03797 0.23 +1.0
32,398 + MPMX19_03797 0.23 +0.3
32,398 + MPMX19_03797 0.23 -1.1
32,398 + MPMX19_03797 0.23 +0.7
32,398 + MPMX19_03797 0.23 +0.2
32,398 + MPMX19_03797 0.23 -1.8
32,399 - MPMX19_03797 0.24 +0.3
32,399 - MPMX19_03797 0.24 -0.1
32,399 - MPMX19_03797 0.24 -0.8
32,399 - MPMX19_03797 0.24 -1.2
32,399 - MPMX19_03797 0.24 +0.5
32,399 - MPMX19_03797 0.24 +0.1
32,399 - MPMX19_03797 0.24 -0.0
32,399 - MPMX19_03797 0.24 -1.5
32,473 + MPMX19_03797 0.30 +0.3
32,473 + MPMX19_03797 0.30 -2.0
32,473 + MPMX19_03797 0.30 +0.3
32,473 + MPMX19_03797 0.30 -3.1
32,473 + MPMX19_03797 0.30 +0.7
32,473 + MPMX19_03797 0.30 +0.1
32,473 + MPMX19_03797 0.30 -0.3
32,474 - MPMX19_03797 0.30 -0.0
32,474 - MPMX19_03797 0.30 -0.2
32,474 - MPMX19_03797 0.30 -0.3
32,474 - MPMX19_03797 0.30 +1.0
32,474 - MPMX19_03797 0.30 -0.1
32,761 + MPMX19_03797 0.53 +0.6
32,761 + MPMX19_03797 0.53 +0.0
32,761 + MPMX19_03797 0.53 -1.0
32,761 + MPMX19_03797 0.53 +0.1
32,762 - MPMX19_03797 0.53 -1.4
32,762 - MPMX19_03797 0.53 +0.1
32,762 - MPMX19_03797 0.53 -2.4
32,762 - MPMX19_03797 0.53 -0.0
32,783 + MPMX19_03797 0.55 -1.2
32,827 + MPMX19_03797 0.58 +0.3
32,827 + MPMX19_03797 0.58 -2.3
32,827 + MPMX19_03797 0.58 +0.3
32,827 + MPMX19_03797 0.58 -0.6
32,827 + MPMX19_03797 0.58 -0.0
32,827 + MPMX19_03797 0.58 +0.1
32,827 + MPMX19_03797 0.58 +0.2
32,828 - MPMX19_03797 0.59 -0.2
32,828 - MPMX19_03797 0.59 -0.7
32,828 - MPMX19_03797 0.59 -0.4
32,828 - MPMX19_03797 0.59 +1.2
32,828 - MPMX19_03797 0.59 -0.5
32,828 - MPMX19_03797 0.59 -0.2
32,828 - MPMX19_03797 0.59 +0.4
32,828 - MPMX19_03797 0.59 -1.3
32,864 + MPMX19_03797 0.61 -0.5
32,864 + MPMX19_03797 0.61 +0.8
32,864 + MPMX19_03797 0.61 -0.6
32,865 - MPMX19_03797 0.62 +0.2
32,932 + MPMX19_03797 0.67 -1.6
32,932 + MPMX19_03797 0.67 -0.0
32,932 + MPMX19_03797 0.67 -0.4
32,932 + MPMX19_03797 0.67 -1.7
32,932 + MPMX19_03797 0.67 +0.9
32,932 + MPMX19_03797 0.67 -1.7
32,932 + MPMX19_03797 0.67 -1.0
32,932 + MPMX19_03797 0.67 -0.6
32,933 - MPMX19_03797 0.67 -0.5
32,933 - MPMX19_03797 0.67 +0.1
32,933 - MPMX19_03797 0.67 -2.4
32,933 - MPMX19_03797 0.67 -0.0
32,933 - MPMX19_03797 0.67 -0.5
32,933 - MPMX19_03797 0.67 +0.5
33,003 + MPMX19_03797 0.73 -0.8
33,003 + MPMX19_03797 0.73 +0.2
33,004 - MPMX19_03797 0.73 -0.2
33,011 + MPMX19_03797 0.73 +0.7
33,082 + MPMX19_03797 0.79 -0.2
33,082 + MPMX19_03797 0.79 +0.9
33,083 - MPMX19_03797 0.79 -0.3
33,083 - MPMX19_03797 0.79 -0.2

Or see this region's nucleotide sequence