Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03701

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
1,139,279	+		MPMX19_03700	0.31	-2.1
1,139,279	+		MPMX19_03700	0.31	-1.5
1,139,280	-		MPMX19_03700	0.31	+0.4
1,139,280	-		MPMX19_03700	0.31	-0.7
1,139,280	-		MPMX19_03700	0.31	+0.3
1,139,282	+		MPMX19_03700	0.31	-0.3
1,139,282	+		MPMX19_03700	0.31	-0.6
1,139,282	+		MPMX19_03700	0.31	-0.1
1,139,283	-		MPMX19_03700	0.32	-0.2
1,139,283	-		MPMX19_03700	0.32	-0.8
1,139,283	-		MPMX19_03700	0.32	-0.7
1,139,283	-		MPMX19_03700	0.32	+0.0
1,139,283	-		MPMX19_03700	0.32	+0.3
1,139,283	-		MPMX19_03700	0.32	-0.7
1,139,283	-		MPMX19_03700	0.32	+0.4
1,139,283	-		MPMX19_03700	0.32	-0.7
1,139,549	+		MPMX19_03700	0.55	-1.1
1,139,579	+		MPMX19_03700	0.58	-0.7
1,139,579	+		MPMX19_03700	0.58	-0.9
1,139,579	+		MPMX19_03700	0.58	-0.2
1,139,579	+		MPMX19_03700	0.58	+0.3
1,139,579	+		MPMX19_03700	0.58	-0.5
1,139,579	+		MPMX19_03700	0.58	+0.2
1,139,579	+		MPMX19_03700	0.58	-0.7
1,139,580	-		MPMX19_03700	0.58	-0.7
1,139,580	-		MPMX19_03700	0.58	-0.9
1,139,580	-		MPMX19_03700	0.58	-0.4
1,139,580	-		MPMX19_03700	0.58	-0.5
1,139,580	-		MPMX19_03700	0.58	-0.5
1,139,580	-		MPMX19_03700	0.58	+0.1
1,139,580	-		MPMX19_03700	0.58	-1.2
1,139,580	-		MPMX19_03700	0.58	+0.9
1,139,580	-		MPMX19_03700	0.58	-0.5
1,139,580	-		MPMX19_03700	0.58	-1.0
1,139,580	-		MPMX19_03700	0.58	-0.2
1,139,580	-		MPMX19_03700	0.58	-0.6
1,139,580	-		MPMX19_03700	0.58	-0.6
1,139,621	+		MPMX19_03700	0.62	-1.1
1,139,621	+		MPMX19_03700	0.62	-0.3
1,139,621	+		MPMX19_03700	0.62	-0.1
1,139,621	+		MPMX19_03700	0.62	-1.9
1,139,621	+		MPMX19_03700	0.62	+1.5
1,139,621	+		MPMX19_03700	0.62	+0.0
1,139,621	+		MPMX19_03700	0.62	+0.5
1,139,622	-		MPMX19_03700	0.62	-0.5
1,139,622	-		MPMX19_03700	0.62	+0.5
1,139,622	-		MPMX19_03700	0.62	-0.5
1,139,885	+		MPMX19_03700	0.86	-0.1
1,139,885	+		MPMX19_03700	0.86	-0.7
1,139,885	+		MPMX19_03700	0.86	-0.1
1,139,885	+		MPMX19_03700	0.86	-0.5
1,139,885	+		MPMX19_03700	0.86	+0.8
1,139,886	-		MPMX19_03700	0.86	+0.8
1,139,886	-		MPMX19_03700	0.86	-0.7
1,139,886	-		MPMX19_03700	0.86	-0.5
1,139,886	-		MPMX19_03700	0.86	-0.5
1,139,894	+		MPMX19_03700	0.87	-0.9
1,139,894	+		MPMX19_03700	0.87	-0.3
1,139,894	+		MPMX19_03700	0.87	+0.3
1,139,894	+		MPMX19_03700	0.87	+0.8
1,139,894	+		MPMX19_03700	0.87	+1.1
1,139,894	+		MPMX19_03700	0.87	-0.3
1,139,894	+		MPMX19_03700	0.87	-0.4
1,139,894	+		MPMX19_03700	0.87	+2.1
1,139,894	+		MPMX19_03700	0.87	-0.4
1,139,894	+		MPMX19_03700	0.87	-0.7
1,139,894	+		MPMX19_03700	0.87	+0.2
1,139,894	+		MPMX19_03700	0.87	+1.5
1,139,894	+		MPMX19_03700	0.87	-0.8
1,139,894	+		MPMX19_03700	0.87	-1.7
1,139,894	+		MPMX19_03700	0.87	-1.1
1,139,895	-		MPMX19_03700	0.87	+0.2
1,139,895	-		MPMX19_03700	0.87	+0.2
1,139,895	-		MPMX19_03700	0.87	-0.1
1,139,895	-		MPMX19_03700	0.87	-1.7
1,139,895	-		MPMX19_03700	0.87	-0.5
1,139,895	-		MPMX19_03700	0.87	+0.3
1,139,895	-		MPMX19_03700	0.87	-0.1
1,139,895	-		MPMX19_03700	0.87	-1.1
1,139,895	-		MPMX19_03700	0.87	+0.5
1,139,895	-		MPMX19_03700	0.87	-0.7
1,139,895	-		MPMX19_03700	0.87	-1.9
1,139,895	-		MPMX19_03700	0.87	-0.1
1,139,895	-		MPMX19_03700	0.87	-1.0
1,140,042	+				+0.4
1,140,042	+				+0.8
1,140,042	+				+0.3
1,140,042	+				-0.2
1,140,042	+				-1.3
1,140,043	-				-0.1
1,140,043	-				-0.0
1,140,043	-				+0.8
1,140,043	-				+0.8
1,140,096	+				-0.5
1,140,097	-				-1.0
1,140,137	+				-0.4
1,140,137	+				-2.3
1,140,138	-				+0.3
1,140,142	+				-1.7
1,140,142	+				+0.8
1,140,143	-				-0.6
1,140,143	-				-0.6
1,140,162	+				+0.9
1,140,163	-				-0.5
1,140,163	-				-0.7
1,140,284	+				-0.6
1,140,423	+		MPMX19_03701	0.24	-0.6
1,140,423	+		MPMX19_03701	0.24	-0.8
1,140,423	+		MPMX19_03701	0.24	-0.6
1,140,424	-		MPMX19_03701	0.24	-1.7
1,140,424	-		MPMX19_03701	0.24	-0.3
1,140,424	-		MPMX19_03701	0.24	+0.3
1,140,424	-		MPMX19_03701	0.24	+0.2
1,140,424	-		MPMX19_03701	0.24	-2.1
1,140,424	-		MPMX19_03701	0.24	+0.7
1,140,708	+		MPMX19_03701	0.55	+1.2
1,140,708	+		MPMX19_03701	0.55	-1.1
1,140,708	+		MPMX19_03701	0.55	-0.9
1,140,708	+		MPMX19_03701	0.55	-1.9
1,140,709	-		MPMX19_03701	0.55	-0.1
1,140,709	-		MPMX19_03701	0.55	+1.5
1,140,709	-		MPMX19_03701	0.55	-0.5
1,140,709	-		MPMX19_03701	0.55	-0.1
1,140,709	-		MPMX19_03701	0.55	-0.7
1,140,709	-		MPMX19_03701	0.55	-0.2
1,140,720	+		MPMX19_03701	0.56	-0.8
1,140,720	+		MPMX19_03701	0.56	-0.8
1,140,720	+		MPMX19_03701	0.56	-0.1
1,140,721	-		MPMX19_03701	0.57	-0.3
1,140,721	-		MPMX19_03701	0.57	+0.5
1,140,721	-		MPMX19_03701	0.57	+1.2
1,140,721	-		MPMX19_03701	0.57	-0.8
1,140,721	-		MPMX19_03701	0.57	+1.1
1,140,741	+		MPMX19_03701	0.59	-0.2
1,140,741	+		MPMX19_03701	0.59	+0.7
1,140,741	+		MPMX19_03701	0.59	-1.3
1,140,741	+		MPMX19_03701	0.59	+0.3
1,140,741	+		MPMX19_03701	0.59	-0.6
1,140,741	+		MPMX19_03701	0.59	-0.8
1,140,741	+		MPMX19_03701	0.59	+0.2
1,140,742	-		MPMX19_03701	0.59	+0.1
1,140,742	-		MPMX19_03701	0.59	+1.0
1,140,831	+		MPMX19_03701	0.69	-0.1
1,140,831	+		MPMX19_03701	0.69	-1.7
1,140,831	+		MPMX19_03701	0.69	-1.2
1,140,831	+		MPMX19_03701	0.69	-2.1
1,140,831	+		MPMX19_03701	0.69	-0.4
1,140,831	+		MPMX19_03701	0.69	-1.3
1,140,832	-		MPMX19_03701	0.69	-1.8
1,140,832	-		MPMX19_03701	0.69	-0.2
1,140,832	-		MPMX19_03701	0.69	+1.1
1,140,832	-		MPMX19_03701	0.69	+0.0
1,140,832	-		MPMX19_03701	0.69	+0.6
1,140,832	-		MPMX19_03701	0.69	-0.5
1,140,832	-		MPMX19_03701	0.69	+0.3
1,140,832	-		MPMX19_03701	0.69	-0.7
1,140,930	+		MPMX19_03701	0.80	+0.5
1,140,930	+		MPMX19_03701	0.80	-0.3
1,140,931	-		MPMX19_03701	0.80	+0.2
1,140,931	-		MPMX19_03701	0.80	-1.1
1,140,939	+		MPMX19_03701	0.81	-0.3
1,140,954	+		MPMX19_03701	0.82	-0.1
1,140,954	+		MPMX19_03701	0.82	-0.1
1,140,955	-		MPMX19_03701	0.82	+2.7
1,140,955	-		MPMX19_03701	0.82	-0.2
1,140,955	-		MPMX19_03701	0.82	+1.0
1,140,955	-		MPMX19_03701	0.82	-1.0
1,141,014	+		MPMX19_03701	0.89	-0.5
1,141,014	+		MPMX19_03701	0.89	-0.3
1,141,014	+		MPMX19_03701	0.89	-0.6
1,141,014	+		MPMX19_03701	0.89	+1.0
1,141,015	-		MPMX19_03701	0.89	-0.5
1,141,015	-		MPMX19_03701	0.89	-0.2
1,141,015	-		MPMX19_03701	0.89	-0.5
1,141,015	-		MPMX19_03701	0.89	-0.6
1,141,015	-		MPMX19_03701	0.89	-1.1
1,141,015	-		MPMX19_03701	0.89	-0.8
1,141,488	+		MPMX19_03702	0.15	+0.8
1,141,488	+		MPMX19_03702	0.15	-0.0
1,141,489	-		MPMX19_03702	0.15	-0.7
1,141,489	-		MPMX19_03702	0.15	-1.2
1,141,489	-		MPMX19_03702	0.15	-1.0
1,141,489	-		MPMX19_03702	0.15	-0.8
1,141,689	+		MPMX19_03702	0.27	-0.9
1,141,832	+		MPMX19_03702	0.36	+0.4
1,141,872	+		MPMX19_03702	0.39	-0.6
1,141,872	+		MPMX19_03702	0.39	-0.4
1,141,965	+		MPMX19_03702	0.45	-0.3
1,141,965	+		MPMX19_03702	0.45	+0.3
1,141,965	+		MPMX19_03702	0.45	+1.1
1,141,965	+		MPMX19_03702	0.45	+0.1
1,141,965	+		MPMX19_03702	0.45	+0.4
1,141,965	+		MPMX19_03702	0.45	-0.1
1,141,965	+		MPMX19_03702	0.45	-1.5
1,141,965	+		MPMX19_03702	0.45	+0.0
1,141,966	-		MPMX19_03702	0.45	+0.7
1,141,966	-		MPMX19_03702	0.45	+0.1
1,141,966	-		MPMX19_03702	0.45	-0.5