Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03491

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03490 and MPMX19_03491 are separated by 64 nucleotidesMPMX19_03491 and MPMX19_03492 are separated by 289 nucleotides MPMX19_03490: MPMX19_03490 - hypothetical protein, at 903,336 to 904,418 _03490 MPMX19_03491: MPMX19_03491 - putative FAD-linked oxidoreductase, at 904,483 to 905,904 _03491 MPMX19_03492: MPMX19_03492 - 3'-5' exonuclease DinG, at 906,194 to 907,132 _03492 Position (kb) 904 905 906Strain fitness (log2 ratio) -2 -1 0 1 2 3at 903.511 kb on + strand, within MPMX19_03490at 903.511 kb on + strand, within MPMX19_03490at 903.511 kb on + strand, within MPMX19_03490at 903.512 kb on - strand, within MPMX19_03490at 903.512 kb on - strand, within MPMX19_03490at 903.817 kb on + strand, within MPMX19_03490at 903.817 kb on + strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.920 kb on - strand, within MPMX19_03490at 903.920 kb on - strand, within MPMX19_03490at 903.973 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.992 kb on - strand, within MPMX19_03490at 904.012 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.148 kb on - strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.247 kb on - strand, within MPMX19_03490at 904.247 kb on - strand, within MPMX19_03490at 904.247 kb on - strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.262 kb on - strand, within MPMX19_03490at 904.262 kb on - strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.484 kb on + strandat 904.580 kb on + strandat 904.580 kb on + strandat 904.581 kb on - strandat 905.336 kb on + strand, within MPMX19_03491at 905.363 kb on + strand, within MPMX19_03491at 905.363 kb on + strand, within MPMX19_03491at 905.519 kb on + strand, within MPMX19_03491at 905.926 kb on + strandat 905.926 kb on + strandat 905.926 kb on + strandat 905.926 kb on + strandat 905.927 kb on - strandat 905.927 kb on - strandat 905.927 kb on - strandat 905.927 kb on - strandat 905.968 kb on + strandat 905.969 kb on - strandat 906.011 kb on + strandat 906.011 kb on + strandat 906.012 kb on - strandat 906.012 kb on - strandat 906.012 kb on - strandat 906.140 kb on + strandat 906.211 kb on + strandat 906.211 kb on + strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.879 kb on - strand, within MPMX19_03492at 906.879 kb on - strand, within MPMX19_03492at 906.879 kb on - strand, within MPMX19_03492

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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903,511 + MPMX19_03490 0.16 -0.2
903,511 + MPMX19_03490 0.16 -0.5
903,511 + MPMX19_03490 0.16 +1.7
903,512 - MPMX19_03490 0.16 +0.3
903,512 - MPMX19_03490 0.16 -0.2
903,817 + MPMX19_03490 0.44 -1.0
903,817 + MPMX19_03490 0.44 +1.1
903,818 - MPMX19_03490 0.45 -1.3
903,818 - MPMX19_03490 0.45 +0.3
903,818 - MPMX19_03490 0.45 -0.4
903,818 - MPMX19_03490 0.45 -2.0
903,919 + MPMX19_03490 0.54 -0.5
903,919 + MPMX19_03490 0.54 +0.0
903,919 + MPMX19_03490 0.54 -0.5
903,919 + MPMX19_03490 0.54 +0.2
903,919 + MPMX19_03490 0.54 -0.1
903,920 - MPMX19_03490 0.54 -0.8
903,920 - MPMX19_03490 0.54 +0.3
903,973 + MPMX19_03490 0.59 +0.3
903,991 + MPMX19_03490 0.60 +0.7
903,991 + MPMX19_03490 0.60 -0.4
903,991 + MPMX19_03490 0.60 -2.5
903,992 - MPMX19_03490 0.61 -0.4
904,012 + MPMX19_03490 0.62 -0.8
904,024 + MPMX19_03490 0.64 -0.2
904,024 + MPMX19_03490 0.64 -1.0
904,024 + MPMX19_03490 0.64 +1.5
904,024 + MPMX19_03490 0.64 -0.6
904,024 + MPMX19_03490 0.64 +0.8
904,024 + MPMX19_03490 0.64 +0.1
904,024 + MPMX19_03490 0.64 +0.7
904,024 + MPMX19_03490 0.64 +0.3
904,024 + MPMX19_03490 0.64 +0.7
904,024 + MPMX19_03490 0.64 -0.5
904,024 + MPMX19_03490 0.64 -0.9
904,024 + MPMX19_03490 0.64 -2.4
904,024 + MPMX19_03490 0.64 +0.5
904,024 + MPMX19_03490 0.64 -0.6
904,024 + MPMX19_03490 0.64 -2.2
904,024 + MPMX19_03490 0.64 +1.4
904,024 + MPMX19_03490 0.64 -1.3
904,024 + MPMX19_03490 0.64 +0.1
904,024 + MPMX19_03490 0.64 -0.3
904,024 + MPMX19_03490 0.64 -0.8
904,024 + MPMX19_03490 0.64 -0.6
904,025 - MPMX19_03490 0.64 +0.4
904,025 - MPMX19_03490 0.64 -0.7
904,025 - MPMX19_03490 0.64 -0.3
904,025 - MPMX19_03490 0.64 -0.9
904,025 - MPMX19_03490 0.64 +0.2
904,025 - MPMX19_03490 0.64 -0.1
904,025 - MPMX19_03490 0.64 +0.5
904,025 - MPMX19_03490 0.64 -0.8
904,025 - MPMX19_03490 0.64 -0.2
904,025 - MPMX19_03490 0.64 -0.0
904,025 - MPMX19_03490 0.64 -1.6
904,025 - MPMX19_03490 0.64 -1.7
904,025 - MPMX19_03490 0.64 -2.0
904,025 - MPMX19_03490 0.64 -1.1
904,025 - MPMX19_03490 0.64 -0.4
904,025 - MPMX19_03490 0.64 +3.1
904,025 - MPMX19_03490 0.64 +0.6
904,025 - MPMX19_03490 0.64 -1.0
904,147 + MPMX19_03490 0.75 -1.1
904,147 + MPMX19_03490 0.75 +0.5
904,147 + MPMX19_03490 0.75 -0.3
904,147 + MPMX19_03490 0.75 +0.2
904,147 + MPMX19_03490 0.75 -2.6
904,147 + MPMX19_03490 0.75 +0.0
904,148 - MPMX19_03490 0.75 +0.5
904,246 + MPMX19_03490 0.84 -1.3
904,246 + MPMX19_03490 0.84 -0.8
904,246 + MPMX19_03490 0.84 -0.5
904,246 + MPMX19_03490 0.84 -0.0
904,246 + MPMX19_03490 0.84 +0.6
904,246 + MPMX19_03490 0.84 -1.1
904,246 + MPMX19_03490 0.84 -0.4
904,246 + MPMX19_03490 0.84 -0.2
904,246 + MPMX19_03490 0.84 +1.7
904,247 - MPMX19_03490 0.84 -0.0
904,247 - MPMX19_03490 0.84 +1.7
904,247 - MPMX19_03490 0.84 -0.0
904,261 + MPMX19_03490 0.85 -0.6
904,261 + MPMX19_03490 0.85 -2.3
904,261 + MPMX19_03490 0.85 -0.1
904,261 + MPMX19_03490 0.85 +2.2
904,262 - MPMX19_03490 0.86 +0.0
904,262 - MPMX19_03490 0.86 +0.7
904,273 + MPMX19_03490 0.87 -0.1
904,273 + MPMX19_03490 0.87 -2.2
904,273 + MPMX19_03490 0.87 -0.6
904,273 + MPMX19_03490 0.87 +0.5
904,273 + MPMX19_03490 0.87 -0.6
904,274 - MPMX19_03490 0.87 +0.9
904,274 - MPMX19_03490 0.87 -0.8
904,274 - MPMX19_03490 0.87 +1.3
904,274 - MPMX19_03490 0.87 +0.3
904,274 - MPMX19_03490 0.87 +1.3
904,274 - MPMX19_03490 0.87 -0.4
904,274 - MPMX19_03490 0.87 -0.6
904,484 + -1.7
904,580 + -0.0
904,580 + +0.2
904,581 - -0.4
905,336 + MPMX19_03491 0.60 -0.8
905,363 + MPMX19_03491 0.62 -0.8
905,363 + MPMX19_03491 0.62 -1.4
905,519 + MPMX19_03491 0.73 -0.4
905,926 + -0.7
905,926 + +0.5
905,926 + -1.1
905,926 + +0.3
905,927 - +0.7
905,927 - -1.1
905,927 - +0.8
905,927 - -0.4
905,968 + -0.4
905,969 - -0.7
906,011 + -0.8
906,011 + +0.7
906,012 - -1.6
906,012 - -0.7
906,012 - -1.4
906,140 + -0.6
906,211 + -2.1
906,211 + -1.1
906,212 - +0.5
906,212 - +0.0
906,212 - -0.1
906,212 - -1.4
906,212 - -0.7
906,212 - -0.3
906,879 - MPMX19_03492 0.73 -0.8
906,879 - MPMX19_03492 0.73 -1.0
906,879 - MPMX19_03492 0.73 +0.1

Or see this region's nucleotide sequence