Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03412

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03410 and MPMX19_03411 are separated by 152 nucleotidesMPMX19_03411 and MPMX19_03412 are separated by 241 nucleotidesMPMX19_03412 and MPMX19_03413 are separated by 306 nucleotides MPMX19_03410: MPMX19_03410 - 23S ribosomal RNA, at 798,072 to 800,807 _03410 MPMX19_03411: MPMX19_03411 - 5S ribosomal RNA, at 800,960 to 801,070 _03411 MPMX19_03412: MPMX19_03412 - putative cystine transporter YijE, at 801,312 to 802,247 _03412 MPMX19_03413: MPMX19_03413 - hypothetical protein, at 802,554 to 803,690 _03413 Position (kb) 801 802 803Strain fitness (log2 ratio) -3 -2 -1 0 1at 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 801.186 kb on + strandat 801.186 kb on + strandat 801.186 kb on + strandat 801.187 kb on - strandat 801.294 kb on + strandat 801.295 kb on - strandat 801.295 kb on - strandat 801.393 kb on + strandat 801.393 kb on + strandat 801.393 kb on + strandat 801.394 kb on - strandat 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.816 kb on - strand, within MPMX19_03412at 802.033 kb on - strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.514 kb on - strandat 802.722 kb on + strand, within MPMX19_03413at 802.722 kb on + strand, within MPMX19_03413at 802.722 kb on + strand, within MPMX19_03413at 802.722 kb on + strand, within MPMX19_03413at 802.723 kb on - strand, within MPMX19_03413at 802.723 kb on - strand, within MPMX19_03413at 802.917 kb on + strand, within MPMX19_03413at 802.917 kb on + strand, within MPMX19_03413at 802.918 kb on - strand, within MPMX19_03413at 802.918 kb on - strand, within MPMX19_03413at 803.208 kb on + strand, within MPMX19_03413at 803.208 kb on + strand, within MPMX19_03413at 803.209 kb on - strand, within MPMX19_03413at 803.209 kb on - strand, within MPMX19_03413at 803.209 kb on - strand, within MPMX19_03413

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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800,914 + +0.4
800,914 + -0.9
800,914 + +0.0
800,914 + +0.5
800,914 + -1.3
800,914 + +0.5
800,914 + -2.2
801,186 + -1.1
801,186 + +0.6
801,186 + +0.2
801,187 - -1.0
801,294 + -0.5
801,295 - -0.7
801,295 - -1.8
801,393 + +0.5
801,393 + +0.5
801,393 + -0.1
801,394 - -0.5
801,508 + MPMX19_03412 0.21 -1.4
801,508 + MPMX19_03412 0.21 -0.9
801,508 + MPMX19_03412 0.21 -0.7
801,508 + MPMX19_03412 0.21 +0.0
801,508 + MPMX19_03412 0.21 -2.2
801,509 - MPMX19_03412 0.21 -1.5
801,509 - MPMX19_03412 0.21 -1.7
801,509 - MPMX19_03412 0.21 -1.8
801,509 - MPMX19_03412 0.21 +0.5
801,509 - MPMX19_03412 0.21 -0.5
801,509 - MPMX19_03412 0.21 +0.2
801,511 + MPMX19_03412 0.21 -0.3
801,511 + MPMX19_03412 0.21 -0.4
801,511 + MPMX19_03412 0.21 -0.1
801,511 + MPMX19_03412 0.21 +0.5
801,511 + MPMX19_03412 0.21 +0.5
801,511 + MPMX19_03412 0.21 -0.2
801,511 + MPMX19_03412 0.21 +0.3
801,511 + MPMX19_03412 0.21 -1.9
801,511 + MPMX19_03412 0.21 -1.7
801,511 + MPMX19_03412 0.21 -0.9
801,511 + MPMX19_03412 0.21 +0.1
801,511 + MPMX19_03412 0.21 -1.1
801,511 + MPMX19_03412 0.21 +0.7
801,511 + MPMX19_03412 0.21 +0.1
801,511 + MPMX19_03412 0.21 -3.1
801,512 - MPMX19_03412 0.21 -0.5
801,512 - MPMX19_03412 0.21 +0.7
801,512 - MPMX19_03412 0.21 -0.9
801,512 - MPMX19_03412 0.21 -0.8
801,512 - MPMX19_03412 0.21 -0.2
801,512 - MPMX19_03412 0.21 +0.7
801,512 - MPMX19_03412 0.21 -0.6
801,512 - MPMX19_03412 0.21 -1.0
801,512 - MPMX19_03412 0.21 -0.3
801,512 - MPMX19_03412 0.21 -1.9
801,512 - MPMX19_03412 0.21 -0.3
801,512 - MPMX19_03412 0.21 -0.5
801,512 - MPMX19_03412 0.21 +0.2
801,512 - MPMX19_03412 0.21 -0.7
801,512 - MPMX19_03412 0.21 -0.2
801,512 - MPMX19_03412 0.21 -0.5
801,512 - MPMX19_03412 0.21 -0.7
801,512 - MPMX19_03412 0.21 +0.1
801,675 + MPMX19_03412 0.39 +0.7
801,675 + MPMX19_03412 0.39 -1.3
801,675 + MPMX19_03412 0.39 +0.2
801,675 + MPMX19_03412 0.39 -1.1
801,675 + MPMX19_03412 0.39 +0.7
801,675 + MPMX19_03412 0.39 -0.9
801,676 - MPMX19_03412 0.39 -1.4
801,676 - MPMX19_03412 0.39 -0.7
801,676 - MPMX19_03412 0.39 -0.3
801,676 - MPMX19_03412 0.39 -0.3
801,676 - MPMX19_03412 0.39 -1.1
801,676 - MPMX19_03412 0.39 -0.4
801,676 - MPMX19_03412 0.39 -0.7
801,676 - MPMX19_03412 0.39 -0.8
801,676 - MPMX19_03412 0.39 -0.9
801,816 - MPMX19_03412 0.54 +0.5
802,033 - MPMX19_03412 0.77 +0.4
802,062 + MPMX19_03412 0.80 +0.4
802,062 + MPMX19_03412 0.80 -1.9
802,062 + MPMX19_03412 0.80 +0.3
802,063 - MPMX19_03412 0.80 -0.1
802,063 - MPMX19_03412 0.80 -0.0
802,063 - MPMX19_03412 0.80 -0.9
802,514 - -0.6
802,722 + MPMX19_03413 0.15 -1.3
802,722 + MPMX19_03413 0.15 -0.3
802,722 + MPMX19_03413 0.15 -0.6
802,722 + MPMX19_03413 0.15 -0.3
802,723 - MPMX19_03413 0.15 +0.8
802,723 - MPMX19_03413 0.15 +0.6
802,917 + MPMX19_03413 0.32 +0.0
802,917 + MPMX19_03413 0.32 -0.0
802,918 - MPMX19_03413 0.32 +0.2
802,918 - MPMX19_03413 0.32 -0.1
803,208 + MPMX19_03413 0.58 -2.2
803,208 + MPMX19_03413 0.58 +1.5
803,209 - MPMX19_03413 0.58 +0.3
803,209 - MPMX19_03413 0.58 -0.2
803,209 - MPMX19_03413 0.58 -0.9

Or see this region's nucleotide sequence