Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03322

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03321 and MPMX19_03322 are separated by 775 nucleotidesMPMX19_03322 and MPMX19_03323 are separated by 102 nucleotides MPMX19_03321: MPMX19_03321 - hypothetical protein, at 671,327 to 672,181 _03321 MPMX19_03322: MPMX19_03322 - hypothetical protein, at 672,957 to 673,919 _03322 MPMX19_03323: MPMX19_03323 - hypothetical protein, at 674,022 to 674,948 _03323 Position (kb) 672 673 674Strain fitness (log2 ratio) -2 -1 0 1 2at 672.090 kb on + strand, within MPMX19_03321at 672.090 kb on + strand, within MPMX19_03321at 672.111 kb on + strandat 672.111 kb on + strandat 672.112 kb on - strandat 672.132 kb on + strandat 672.132 kb on + strandat 672.133 kb on - strandat 672.133 kb on - strandat 672.133 kb on - strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.178 kb on - strandat 672.178 kb on - strandat 672.178 kb on - strandat 672.178 kb on - strandat 672.582 kb on + strandat 672.976 kb on + strandat 672.976 kb on + strandat 672.976 kb on + strandat 672.977 kb on - strandat 673.159 kb on + strand, within MPMX19_03322at 673.159 kb on + strand, within MPMX19_03322at 673.180 kb on + strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.396 kb on + strand, within MPMX19_03322at 673.396 kb on + strand, within MPMX19_03322at 673.396 kb on + strand, within MPMX19_03322at 673.397 kb on - strand, within MPMX19_03322at 673.397 kb on - strand, within MPMX19_03322at 673.483 kb on + strand, within MPMX19_03322at 673.483 kb on + strand, within MPMX19_03322at 673.483 kb on + strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.697 kb on - strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.733 kb on - strand, within MPMX19_03322at 673.733 kb on - strand, within MPMX19_03322at 673.927 kb on + strandat 673.927 kb on + strandat 673.927 kb on + strandat 673.927 kb on + strandat 673.928 kb on - strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.490 kb on + strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.732 kb on - strand, within MPMX19_03323

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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672,090 + MPMX19_03321 0.89 +2.1
672,090 + MPMX19_03321 0.89 -0.4
672,111 + -0.8
672,111 + -1.3
672,112 - +0.1
672,132 + -1.5
672,132 + -0.3
672,133 - -1.0
672,133 - -0.1
672,133 - -1.0
672,135 + +0.3
672,135 + +0.1
672,135 + -1.4
672,135 + +0.2
672,135 + +0.3
672,135 + +1.3
672,135 + -0.8
672,135 + -0.8
672,135 + -1.5
672,136 - -1.0
672,136 - -2.2
672,136 - +0.6
672,136 - -0.6
672,136 - +0.9
672,136 - -0.2
672,177 + +1.0
672,177 + -1.8
672,177 + +0.7
672,177 + -0.1
672,177 + +0.2
672,177 + +1.0
672,178 - -1.1
672,178 - -0.5
672,178 - -0.0
672,178 - +0.6
672,582 + -1.5
672,976 + +0.2
672,976 + -1.3
672,976 + -0.1
672,977 - +0.6
673,159 + MPMX19_03322 0.21 -1.0
673,159 + MPMX19_03322 0.21 -0.9
673,180 + MPMX19_03322 0.23 -0.5
673,181 - MPMX19_03322 0.23 -0.8
673,181 - MPMX19_03322 0.23 +0.1
673,181 - MPMX19_03322 0.23 +0.2
673,396 + MPMX19_03322 0.46 -0.3
673,396 + MPMX19_03322 0.46 -0.9
673,396 + MPMX19_03322 0.46 -0.3
673,397 - MPMX19_03322 0.46 -1.7
673,397 - MPMX19_03322 0.46 -0.1
673,483 + MPMX19_03322 0.55 -0.6
673,483 + MPMX19_03322 0.55 -1.4
673,483 + MPMX19_03322 0.55 -0.2
673,484 - MPMX19_03322 0.55 -1.1
673,484 - MPMX19_03322 0.55 -1.7
673,484 - MPMX19_03322 0.55 -1.0
673,484 - MPMX19_03322 0.55 +0.1
673,484 - MPMX19_03322 0.55 -0.2
673,484 - MPMX19_03322 0.55 -1.8
673,484 - MPMX19_03322 0.55 -0.9
673,697 - MPMX19_03322 0.77 +1.1
673,732 + MPMX19_03322 0.80 -0.0
673,732 + MPMX19_03322 0.80 -0.5
673,732 + MPMX19_03322 0.80 -0.5
673,732 + MPMX19_03322 0.80 -1.5
673,732 + MPMX19_03322 0.80 -1.3
673,732 + MPMX19_03322 0.80 +0.1
673,733 - MPMX19_03322 0.81 +0.2
673,733 - MPMX19_03322 0.81 +0.2
673,927 + -1.2
673,927 + +0.6
673,927 + -1.0
673,927 + +0.1
673,928 - -0.6
673,941 + -1.0
673,941 + +0.3
673,941 + -0.5
673,941 + -0.1
673,941 + -0.3
673,941 + -0.4
673,941 + -0.5
673,941 + +0.3
673,942 - +1.0
673,942 - +0.9
673,942 - +0.5
673,942 - +0.3
673,942 - -0.5
673,942 - -1.0
673,942 - -0.4
674,392 + MPMX19_03323 0.40 +0.7
674,392 + MPMX19_03323 0.40 -0.4
674,392 + MPMX19_03323 0.40 -0.6
674,392 + MPMX19_03323 0.40 +0.8
674,392 + MPMX19_03323 0.40 -1.3
674,392 + MPMX19_03323 0.40 -0.4
674,392 + MPMX19_03323 0.40 -1.2
674,393 - MPMX19_03323 0.40 -1.2
674,393 - MPMX19_03323 0.40 -0.7
674,393 - MPMX19_03323 0.40 +0.5
674,393 - MPMX19_03323 0.40 +0.7
674,393 - MPMX19_03323 0.40 -0.3
674,490 + MPMX19_03323 0.50 +2.5
674,491 - MPMX19_03323 0.51 +0.5
674,491 - MPMX19_03323 0.51 -0.7
674,491 - MPMX19_03323 0.51 -1.3
674,732 - MPMX19_03323 0.77 -0.2

Or see this region's nucleotide sequence