Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02717

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02716 and MPMX19_02717 are separated by 64 nucleotides MPMX19_02716: MPMX19_02716 - DNA replication and repair protein RecF, at 2,850,280 to 2,851,464 _02716 MPMX19_02717: MPMX19_02717 - Beta sliding clamp, at 2,851,529 to 2,852,659 _02717 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -1 0 1at 2850.921 kb on - strand, within MPMX19_02716at 2851.373 kb on + strandat 2851.374 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.806 kb on - strandat 2852.806 kb on - strandat 2852.806 kb on - strandat 2852.806 kb on - strandat 2853.641 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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2,850,921 - MPMX19_02716 0.54 +0.5
2,851,373 + -0.8
2,851,374 - -1.3
2,852,796 - -1.1
2,852,796 - -0.8
2,852,796 - +1.4
2,852,796 - -1.1
2,852,796 - -0.2
2,852,796 - +0.4
2,852,806 - -1.7
2,852,806 - -0.0
2,852,806 - -0.6
2,852,806 - -0.9
2,853,641 + -0.3
2,853,650 + -0.8
2,853,650 + -0.2
2,853,650 + -0.8
2,853,650 + -0.3
2,853,650 + -0.6
2,853,650 + +0.9
2,853,650 + +0.5
2,853,650 + -0.2
2,853,650 + -0.8
2,853,650 + -0.5

Or see this region's nucleotide sequence