Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00137 and MPMX19_00138 are separated by 98 nucleotides MPMX19_00138 and MPMX19_00139 are separated by 193 nucleotides MPMX19_00139 and MPMX19_00140 are separated by 10 nucleotides
MPMX19_00137: MPMX19_00137 - hypothetical protein, at 148,886 to 152,047
_00137
MPMX19_00138: MPMX19_00138 - hypothetical protein, at 152,146 to 153,456
_00138
MPMX19_00139: MPMX19_00139 - hypothetical protein, at 153,650 to 153,925
_00139
MPMX19_00140: MPMX19_00140 - hypothetical protein, at 153,936 to 154,703
_00140
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 151.210 kb on + strand, within MPMX19_00137 at 151.211 kb on - strand, within MPMX19_00137 at 151.250 kb on + strand, within MPMX19_00137 at 151.250 kb on + strand, within MPMX19_00137 at 151.250 kb on + strand, within MPMX19_00137 at 151.251 kb on - strand, within MPMX19_00137 at 151.251 kb on - strand, within MPMX19_00137 at 151.251 kb on - strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.283 kb on + strand, within MPMX19_00137 at 151.284 kb on - strand, within MPMX19_00137 at 151.284 kb on - strand, within MPMX19_00137 at 151.284 kb on - strand, within MPMX19_00137 at 151.284 kb on - strand, within MPMX19_00137 at 151.284 kb on - strand, within MPMX19_00137 at 151.284 kb on - strand, within MPMX19_00137 at 151.391 kb on - strand, within MPMX19_00137 at 151.391 kb on - strand, within MPMX19_00137 at 151.495 kb on + strand, within MPMX19_00137 at 151.496 kb on - strand, within MPMX19_00137 at 151.496 kb on - strand, within MPMX19_00137 at 151.521 kb on + strand, within MPMX19_00137 at 151.521 kb on + strand, within MPMX19_00137 at 151.521 kb on + strand, within MPMX19_00137 at 151.521 kb on + strand, within MPMX19_00137 at 151.522 kb on - strand, within MPMX19_00137 at 151.522 kb on - strand, within MPMX19_00137 at 151.667 kb on + strand, within MPMX19_00137 at 151.668 kb on - strand, within MPMX19_00137 at 151.668 kb on - strand, within MPMX19_00137 at 151.731 kb on + strand at 151.731 kb on + strand at 151.731 kb on + strand at 151.732 kb on - strand at 151.732 kb on - strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.790 kb on + strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.791 kb on - strand at 151.792 kb on + strand at 151.792 kb on + strand at 151.793 kb on - strand at 151.891 kb on + strand at 151.891 kb on + strand at 151.892 kb on - strand at 151.892 kb on - strand at 151.892 kb on - strand at 151.896 kb on + strand at 151.896 kb on + strand at 151.896 kb on + strand at 151.896 kb on + strand at 151.896 kb on + strand at 151.896 kb on + strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.897 kb on - strand at 151.964 kb on + strand at 151.964 kb on + strand at 151.964 kb on + strand at 151.964 kb on + strand at 151.964 kb on + strand at 151.964 kb on + strand at 151.964 kb on + strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.965 kb on - strand at 151.971 kb on - strand at 151.971 kb on - strand at 151.991 kb on - strand at 151.991 kb on - strand at 152.045 kb on + strand at 152.045 kb on + strand at 152.046 kb on - strand at 152.051 kb on + strand at 152.052 kb on - strand at 152.070 kb on + strand at 152.070 kb on + strand at 152.070 kb on + strand at 152.071 kb on - strand at 152.071 kb on - strand at 152.071 kb on - strand at 152.071 kb on - strand at 152.071 kb on - strand at 152.124 kb on + strand at 152.143 kb on - strand at 152.164 kb on - strand at 152.180 kb on - strand at 152.300 kb on + strand, within MPMX19_00138 at 152.421 kb on - strand, within MPMX19_00138 at 152.421 kb on - strand, within MPMX19_00138 at 152.435 kb on + strand, within MPMX19_00138 at 152.435 kb on + strand, within MPMX19_00138 at 152.435 kb on + strand, within MPMX19_00138 at 152.447 kb on + strand, within MPMX19_00138 at 152.447 kb on + strand, within MPMX19_00138 at 152.453 kb on + strand, within MPMX19_00138 at 152.453 kb on + strand, within MPMX19_00138 at 152.453 kb on + strand, within MPMX19_00138 at 152.454 kb on - strand, within MPMX19_00138 at 152.455 kb on + strand, within MPMX19_00138 at 152.455 kb on + strand, within MPMX19_00138 at 152.455 kb on + strand, within MPMX19_00138 at 152.455 kb on + strand, within MPMX19_00138 at 152.455 kb on + strand, within MPMX19_00138 at 152.456 kb on - strand, within MPMX19_00138 at 152.456 kb on - strand, within MPMX19_00138 at 152.456 kb on - strand, within MPMX19_00138 at 152.463 kb on + strand, within MPMX19_00138 at 152.465 kb on + strand, within MPMX19_00138 at 152.465 kb on + strand, within MPMX19_00138 at 152.465 kb on + strand, within MPMX19_00138 at 152.469 kb on - strand, within MPMX19_00138 at 152.503 kb on + strand, within MPMX19_00138 at 152.503 kb on + strand, within MPMX19_00138 at 152.522 kb on + strand, within MPMX19_00138 at 152.543 kb on + strand, within MPMX19_00138 at 152.550 kb on + strand, within MPMX19_00138 at 152.550 kb on + strand, within MPMX19_00138 at 152.551 kb on - strand, within MPMX19_00138 at 152.575 kb on - strand, within MPMX19_00138 at 152.575 kb on - strand, within MPMX19_00138 at 152.586 kb on - strand, within MPMX19_00138 at 152.595 kb on + strand, within MPMX19_00138 at 152.595 kb on + strand, within MPMX19_00138 at 152.596 kb on - strand, within MPMX19_00138 at 152.660 kb on + strand, within MPMX19_00138 at 152.667 kb on + strand, within MPMX19_00138 at 152.667 kb on + strand, within MPMX19_00138 at 152.667 kb on + strand, within MPMX19_00138 at 152.668 kb on - strand, within MPMX19_00138 at 152.818 kb on - strand, within MPMX19_00138 at 152.935 kb on - strand, within MPMX19_00138 at 152.935 kb on - strand, within MPMX19_00138 at 152.935 kb on - strand, within MPMX19_00138 at 152.935 kb on - strand, within MPMX19_00138 at 152.935 kb on - strand, within MPMX19_00138 at 152.935 kb on - strand, within MPMX19_00138 at 152.935 kb on - strand, within MPMX19_00138 at 152.936 kb on + strand, within MPMX19_00138 at 152.936 kb on + strand, within MPMX19_00138 at 152.937 kb on - strand, within MPMX19_00138 at 152.949 kb on + strand, within MPMX19_00138 at 153.046 kb on + strand, within MPMX19_00138 at 153.046 kb on + strand, within MPMX19_00138 at 153.047 kb on - strand, within MPMX19_00138 at 153.047 kb on - strand, within MPMX19_00138 at 153.047 kb on - strand, within MPMX19_00138 at 153.047 kb on - strand, within MPMX19_00138 at 153.156 kb on + strand, within MPMX19_00138 at 153.445 kb on + strand at 153.537 kb on + strand at 153.553 kb on + strand at 153.689 kb on + strand, within MPMX19_00139 at 153.689 kb on + strand, within MPMX19_00139 at 153.689 kb on + strand, within MPMX19_00139 at 153.690 kb on - strand, within MPMX19_00139 at 153.690 kb on - strand, within MPMX19_00139 at 153.690 kb on - strand, within MPMX19_00139 at 153.809 kb on + strand, within MPMX19_00139 at 153.809 kb on + strand, within MPMX19_00139 at 153.809 kb on + strand, within MPMX19_00139 at 153.810 kb on - strand, within MPMX19_00139 at 153.810 kb on - strand, within MPMX19_00139 at 153.810 kb on - strand, within MPMX19_00139 at 153.810 kb on - strand, within MPMX19_00139 at 153.810 kb on - strand, within MPMX19_00139 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.410 kb on + strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140 at 154.411 kb on - strand, within MPMX19_00140
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 151,210 + MPMX19_00137 0.73 +0.9 151,211 - MPMX19_00137 0.74 -2.1 151,250 + MPMX19_00137 0.75 -0.5 151,250 + MPMX19_00137 0.75 -0.3 151,250 + MPMX19_00137 0.75 -0.0 151,251 - MPMX19_00137 0.75 -0.5 151,251 - MPMX19_00137 0.75 -2.3 151,251 - MPMX19_00137 0.75 -0.0 151,283 + MPMX19_00137 0.76 +0.9 151,283 + MPMX19_00137 0.76 -1.0 151,283 + MPMX19_00137 0.76 +1.2 151,283 + MPMX19_00137 0.76 -0.1 151,283 + MPMX19_00137 0.76 -0.5 151,283 + MPMX19_00137 0.76 -1.4 151,283 + MPMX19_00137 0.76 -1.4 151,283 + MPMX19_00137 0.76 -0.8 151,284 - MPMX19_00137 0.76 +0.9 151,284 - MPMX19_00137 0.76 -1.4 151,284 - MPMX19_00137 0.76 -0.4 151,284 - MPMX19_00137 0.76 +0.4 151,284 - MPMX19_00137 0.76 +0.8 151,284 - MPMX19_00137 0.76 +0.3 151,391 - MPMX19_00137 0.79 -0.1 151,391 - MPMX19_00137 0.79 -0.7 151,495 + MPMX19_00137 0.83 -0.4 151,496 - MPMX19_00137 0.83 -1.0 151,496 - MPMX19_00137 0.83 -0.7 151,521 + MPMX19_00137 0.83 +0.6 151,521 + MPMX19_00137 0.83 -0.6 151,521 + MPMX19_00137 0.83 -0.8 151,521 + MPMX19_00137 0.83 -0.3 151,522 - MPMX19_00137 0.83 -1.7 151,522 - MPMX19_00137 0.83 -0.2 151,667 + MPMX19_00137 0.88 -0.9 151,668 - MPMX19_00137 0.88 -2.1 151,668 - MPMX19_00137 0.88 -1.2 151,731 + +0.2 151,731 + -1.2 151,731 + -0.2 151,732 - -1.1 151,732 - -0.1 151,790 + -0.1 151,790 + -1.4 151,790 + -0.0 151,790 + -2.2 151,790 + -1.6 151,790 + -1.2 151,790 + +0.5 151,790 + -0.2 151,790 + -0.8 151,790 + -0.4 151,790 + -0.3 151,790 + -1.0 151,790 + -0.9 151,790 + -0.3 151,790 + +0.3 151,790 + +1.2 151,790 + +0.6 151,791 - +0.5 151,791 - -1.2 151,791 - -0.1 151,791 - -1.1 151,791 - -0.3 151,791 - -1.0 151,791 - -1.8 151,791 - -0.9 151,791 - -0.7 151,791 - -0.2 151,791 - +0.4 151,791 - -1.3 151,791 - -0.0 151,791 - +0.2 151,791 - -0.7 151,791 - -0.0 151,791 - +0.2 151,792 + -1.1 151,792 + -1.6 151,793 - -1.8 151,891 + -1.1 151,891 + -1.3 151,892 - +0.8 151,892 - -0.2 151,892 - -0.3 151,896 + +0.2 151,896 + +0.3 151,896 + -1.6 151,896 + -2.7 151,896 + +1.4 151,896 + +0.4 151,897 - -0.0 151,897 - -1.0 151,897 - +1.8 151,897 - -0.1 151,897 - -0.4 151,897 - +1.2 151,897 - -1.1 151,897 - -0.3 151,897 - -0.3 151,897 - +0.1 151,897 - +1.2 151,897 - +1.6 151,964 + -0.6 151,964 + -0.8 151,964 + -2.5 151,964 + -0.4 151,964 + -0.5 151,964 + -2.0 151,964 + -0.4 151,965 - -0.6 151,965 - -1.2 151,965 - +1.8 151,965 - -1.4 151,965 - -0.6 151,965 - -0.3 151,965 - -0.9 151,965 - -0.3 151,965 - -1.6 151,965 - -0.8 151,965 - -0.4 151,965 - -1.2 151,971 - +1.3 151,971 - +0.8 151,991 - -0.7 151,991 - -1.3 152,045 + -0.2 152,045 + +1.2 152,046 - -2.0 152,051 + -0.8 152,052 - +0.1 152,070 + -1.2 152,070 + -1.8 152,070 + +1.3 152,071 - -1.4 152,071 - -0.6 152,071 - -0.2 152,071 - -1.2 152,071 - -0.7 152,124 + -1.2 152,143 - -0.2 152,164 - -0.4 152,180 - -0.4 152,300 + MPMX19_00138 0.12 -1.0 152,421 - MPMX19_00138 0.21 -1.1 152,421 - MPMX19_00138 0.21 -0.5 152,435 + MPMX19_00138 0.22 -1.9 152,435 + MPMX19_00138 0.22 -1.1 152,435 + MPMX19_00138 0.22 -0.9 152,447 + MPMX19_00138 0.23 +0.9 152,447 + MPMX19_00138 0.23 +0.6 152,453 + MPMX19_00138 0.23 -0.0 152,453 + MPMX19_00138 0.23 +0.6 152,453 + MPMX19_00138 0.23 +0.2 152,454 - MPMX19_00138 0.23 -0.4 152,455 + MPMX19_00138 0.24 +0.6 152,455 + MPMX19_00138 0.24 -1.2 152,455 + MPMX19_00138 0.24 -0.4 152,455 + MPMX19_00138 0.24 -0.4 152,455 + MPMX19_00138 0.24 -0.8 152,456 - MPMX19_00138 0.24 -0.4 152,456 - MPMX19_00138 0.24 -0.8 152,456 - MPMX19_00138 0.24 -0.4 152,463 + MPMX19_00138 0.24 -1.0 152,465 + MPMX19_00138 0.24 -2.2 152,465 + MPMX19_00138 0.24 -1.5 152,465 + MPMX19_00138 0.24 +0.2 152,469 - MPMX19_00138 0.25 -1.2 152,503 + MPMX19_00138 0.27 -0.1 152,503 + MPMX19_00138 0.27 -1.2 152,522 + MPMX19_00138 0.29 -0.9 152,543 + MPMX19_00138 0.30 -1.2 152,550 + MPMX19_00138 0.31 +1.6 152,550 + MPMX19_00138 0.31 +0.2 152,551 - MPMX19_00138 0.31 -0.1 152,575 - MPMX19_00138 0.33 -0.8 152,575 - MPMX19_00138 0.33 +0.8 152,586 - MPMX19_00138 0.34 -0.3 152,595 + MPMX19_00138 0.34 -1.0 152,595 + MPMX19_00138 0.34 -1.9 152,596 - MPMX19_00138 0.34 +0.6 152,660 + MPMX19_00138 0.39 -1.8 152,667 + MPMX19_00138 0.40 -2.0 152,667 + MPMX19_00138 0.40 +0.5 152,667 + MPMX19_00138 0.40 -0.6 152,668 - MPMX19_00138 0.40 -2.8 152,818 - MPMX19_00138 0.51 -0.5 152,935 - MPMX19_00138 0.60 -1.1 152,935 - MPMX19_00138 0.60 -2.0 152,935 - MPMX19_00138 0.60 -0.1 152,935 - MPMX19_00138 0.60 -0.0 152,935 - MPMX19_00138 0.60 -1.9 152,935 - MPMX19_00138 0.60 -0.4 152,935 - MPMX19_00138 0.60 -2.8 152,936 + MPMX19_00138 0.60 +1.1 152,936 + MPMX19_00138 0.60 -0.0 152,937 - MPMX19_00138 0.60 -1.0 152,949 + MPMX19_00138 0.61 -1.0 153,046 + MPMX19_00138 0.69 +0.8 153,046 + MPMX19_00138 0.69 -1.2 153,047 - MPMX19_00138 0.69 -0.2 153,047 - MPMX19_00138 0.69 -0.6 153,047 - MPMX19_00138 0.69 +0.4 153,047 - MPMX19_00138 0.69 -0.3 153,156 + MPMX19_00138 0.77 -1.0 153,445 + -0.0 153,537 + -0.6 153,553 + -2.2 153,689 + MPMX19_00139 0.14 +0.6 153,689 + MPMX19_00139 0.14 -2.2 153,689 + MPMX19_00139 0.14 -0.6 153,690 - MPMX19_00139 0.14 -0.6 153,690 - MPMX19_00139 0.14 -0.0 153,690 - MPMX19_00139 0.14 -1.1 153,809 + MPMX19_00139 0.58 -1.4 153,809 + MPMX19_00139 0.58 -0.1 153,809 + MPMX19_00139 0.58 +0.4 153,810 - MPMX19_00139 0.58 -1.2 153,810 - MPMX19_00139 0.58 +0.6 153,810 - MPMX19_00139 0.58 +0.2 153,810 - MPMX19_00139 0.58 -0.0 153,810 - MPMX19_00139 0.58 +1.9 154,410 + MPMX19_00140 0.62 -1.4 154,410 + MPMX19_00140 0.62 -2.0 154,410 + MPMX19_00140 0.62 -0.6 154,410 + MPMX19_00140 0.62 -0.0 154,410 + MPMX19_00140 0.62 -0.6 154,410 + MPMX19_00140 0.62 -0.8 154,410 + MPMX19_00140 0.62 +0.2 154,410 + MPMX19_00140 0.62 -0.2 154,410 + MPMX19_00140 0.62 +0.2 154,410 + MPMX19_00140 0.62 -1.2 154,410 + MPMX19_00140 0.62 +0.4 154,410 + MPMX19_00140 0.62 -2.3 154,410 + MPMX19_00140 0.62 +0.7 154,410 + MPMX19_00140 0.62 +0.2 154,410 + MPMX19_00140 0.62 +0.2 154,411 - MPMX19_00140 0.62 -0.8 154,411 - MPMX19_00140 0.62 +0.3 154,411 - MPMX19_00140 0.62 -0.3 154,411 - MPMX19_00140 0.62 +0.1 154,411 - MPMX19_00140 0.62 +0.7 154,411 - MPMX19_00140 0.62 -0.0 154,411 - MPMX19_00140 0.62 -0.8 154,411 - MPMX19_00140 0.62 -0.9 154,411 - MPMX19_00140 0.62 -0.3 154,411 - MPMX19_00140 0.62 +0.1
Or see this region's nucleotide sequence