Strain Fitness in Methylophilus sp. DMC18 around GFF86

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF85 and GFF86 are separated by 39 nucleotidesGFF86 and GFF87 are separated by 51 nucleotidesGFF87 and GFF88 are separated by 89 nucleotides GFF85 - hypothetical protein, at 97,414 to 98,262 GFF85 GFF86 - hypothetical protein, at 98,302 to 98,781 GFF86 GFF87 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 98,833 to 99,213 GFF87 GFF88 - Response regulator UvrY, at 99,303 to 99,935 GFF88 Position (kb) 98 99Strain fitness (log2 ratio) -2 -1 0 1 2at 97.336 kb on + strandat 97.336 kb on + strandat 97.336 kb on + strandat 97.386 kb on + strandat 97.386 kb on + strandat 97.445 kb on + strandat 97.446 kb on - strandat 97.455 kb on - strandat 97.525 kb on + strand, within GFF85at 97.525 kb on + strand, within GFF85at 97.545 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.609 kb on - strand, within GFF85at 97.614 kb on + strand, within GFF85at 97.682 kb on + strand, within GFF85at 97.833 kb on + strand, within GFF85at 97.834 kb on - strand, within GFF85at 97.839 kb on + strand, within GFF85at 97.840 kb on - strand, within GFF85at 97.863 kb on + strand, within GFF85at 97.863 kb on + strand, within GFF85at 97.863 kb on + strand, within GFF85at 97.864 kb on - strand, within GFF85at 97.864 kb on - strand, within GFF85at 97.875 kb on - strand, within GFF85at 97.908 kb on + strand, within GFF85at 97.908 kb on + strand, within GFF85at 97.909 kb on - strand, within GFF85at 97.909 kb on - strand, within GFF85at 98.005 kb on + strand, within GFF85at 98.006 kb on - strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.136 kb on + strand, within GFF85at 98.136 kb on + strand, within GFF85at 98.137 kb on - strand, within GFF85at 98.213 kb on + strandat 98.213 kb on + strandat 98.213 kb on + strandat 98.304 kb on - strandat 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.486 kb on + strand, within GFF86at 98.487 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.520 kb on + strand, within GFF86at 98.520 kb on + strand, within GFF86at 98.521 kb on - strand, within GFF86at 98.639 kb on + strand, within GFF86at 98.639 kb on + strand, within GFF86at 98.640 kb on - strand, within GFF86at 98.640 kb on - strand, within GFF86at 98.640 kb on - strand, within GFF86at 98.643 kb on + strand, within GFF86at 98.644 kb on - strand, within GFF86at 98.654 kb on - strand, within GFF86at 98.660 kb on + strand, within GFF86at 98.660 kb on + strand, within GFF86at 98.661 kb on - strand, within GFF86at 98.661 kb on - strand, within GFF86at 98.750 kb on + strandat 98.750 kb on + strandat 98.750 kb on + strandat 98.750 kb on + strandat 98.750 kb on + strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.758 kb on + strandat 98.830 kb on + strandat 98.831 kb on - strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 99.214 kb on - strandat 99.214 kb on - strandat 99.214 kb on - strandat 99.214 kb on - strandat 99.246 kb on - strandat 99.251 kb on - strandat 99.251 kb on - strandat 99.251 kb on - strandat 99.291 kb on - strandat 99.305 kb on - strandat 99.309 kb on - strandat 99.309 kb on - strandat 99.309 kb on - strandat 99.309 kb on - strandat 99.313 kb on - strandat 99.319 kb on + strandat 99.331 kb on + strandat 99.331 kb on + strandat 99.332 kb on - strandat 99.332 kb on - strandat 99.332 kb on - strandat 99.332 kb on - strandat 99.332 kb on - strandat 99.334 kb on + strandat 99.334 kb on + strandat 99.334 kb on + strandat 99.335 kb on - strandat 99.335 kb on - strandat 99.335 kb on - strandat 99.388 kb on + strand, within GFF88at 99.389 kb on - strand, within GFF88at 99.408 kb on - strand, within GFF88at 99.502 kb on - strand, within GFF88at 99.565 kb on + strand, within GFF88at 99.634 kb on + strand, within GFF88at 99.635 kb on - strand, within GFF88at 99.635 kb on - strand, within GFF88at 99.635 kb on - strand, within GFF88at 99.771 kb on + strand, within GFF88at 99.771 kb on + strand, within GFF88at 99.772 kb on - strand, within GFF88at 99.772 kb on - strand, within GFF88at 99.772 kb on - strand, within GFF88at 99.773 kb on + strand, within GFF88at 99.781 kb on - strand, within GFF88

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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97,336 + -0.9
97,336 + -1.1
97,336 + +0.5
97,386 + -0.9
97,386 + -0.8
97,445 + -0.6
97,446 - -0.4
97,455 - -1.4
97,525 + GFF85 0.13 +0.4
97,525 + GFF85 0.13 +0.0
97,545 + GFF85 0.15 -0.8
97,608 + GFF85 0.23 +0.2
97,608 + GFF85 0.23 -0.6
97,608 + GFF85 0.23 +0.4
97,608 + GFF85 0.23 -0.2
97,609 - GFF85 0.23 -1.6
97,614 + GFF85 0.24 +0.0
97,682 + GFF85 0.32 -0.6
97,833 + GFF85 0.49 -0.2
97,834 - GFF85 0.49 -0.1
97,839 + GFF85 0.50 -0.1
97,840 - GFF85 0.50 +0.9
97,863 + GFF85 0.53 +0.1
97,863 + GFF85 0.53 -0.5
97,863 + GFF85 0.53 -0.1
97,864 - GFF85 0.53 +0.5
97,864 - GFF85 0.53 -0.3
97,875 - GFF85 0.54 -0.2
97,908 + GFF85 0.58 +0.4
97,908 + GFF85 0.58 +0.2
97,909 - GFF85 0.58 -1.1
97,909 - GFF85 0.58 -0.8
98,005 + GFF85 0.70 -1.1
98,006 - GFF85 0.70 +0.9
98,088 + GFF85 0.79 +0.5
98,088 + GFF85 0.79 -1.1
98,088 + GFF85 0.79 +0.5
98,088 + GFF85 0.79 -0.2
98,088 + GFF85 0.79 -0.3
98,088 + GFF85 0.79 -1.6
98,088 + GFF85 0.79 -0.1
98,088 + GFF85 0.79 -0.6
98,088 + GFF85 0.79 -1.4
98,088 + GFF85 0.79 -1.1
98,088 + GFF85 0.79 +0.0
98,089 - GFF85 0.80 +0.5
98,089 - GFF85 0.80 +0.1
98,089 - GFF85 0.80 -0.9
98,089 - GFF85 0.80 -2.4
98,089 - GFF85 0.80 +0.3
98,089 - GFF85 0.80 +0.1
98,089 - GFF85 0.80 -0.8
98,089 - GFF85 0.80 +0.1
98,089 - GFF85 0.80 -0.6
98,089 - GFF85 0.80 -1.1
98,136 + GFF85 0.85 +0.1
98,136 + GFF85 0.85 -1.0
98,137 - GFF85 0.85 -0.6
98,213 + +0.2
98,213 + -0.1
98,213 + -0.2
98,304 - -0.6
98,432 + GFF86 0.27 -0.1
98,432 + GFF86 0.27 -0.3
98,432 + GFF86 0.27 -1.4
98,432 + GFF86 0.27 -0.6
98,432 + GFF86 0.27 -1.1
98,432 + GFF86 0.27 -0.5
98,432 + GFF86 0.27 -1.6
98,432 + GFF86 0.27 +1.2
98,433 - GFF86 0.27 -0.2
98,433 - GFF86 0.27 +0.1
98,433 - GFF86 0.27 +0.4
98,433 - GFF86 0.27 -0.8
98,486 + GFF86 0.38 -0.9
98,487 - GFF86 0.39 -1.1
98,499 - GFF86 0.41 -0.2
98,499 - GFF86 0.41 +2.4
98,499 - GFF86 0.41 -0.6
98,499 - GFF86 0.41 -0.5
98,520 + GFF86 0.45 -0.0
98,520 + GFF86 0.45 -1.4
98,521 - GFF86 0.46 +0.5
98,639 + GFF86 0.70 -1.4
98,639 + GFF86 0.70 -0.7
98,640 - GFF86 0.70 -0.6
98,640 - GFF86 0.70 -0.9
98,640 - GFF86 0.70 -2.4
98,643 + GFF86 0.71 -2.6
98,644 - GFF86 0.71 -0.4
98,654 - GFF86 0.73 -0.8
98,660 + GFF86 0.75 -1.4
98,660 + GFF86 0.75 -0.8
98,661 - GFF86 0.75 -0.5
98,661 - GFF86 0.75 -0.4
98,750 + -1.9
98,750 + -1.9
98,750 + -0.1
98,750 + -0.1
98,750 + +0.4
98,751 - +0.2
98,751 - -0.5
98,751 - -0.5
98,751 - -0.6
98,751 - -0.8
98,751 - -0.1
98,751 - -0.4
98,758 + -1.4
98,830 + -1.4
98,831 - +0.9
98,834 + -0.3
98,834 + -1.6
98,834 + +0.1
98,834 + -0.9
98,834 + +0.4
98,835 - -0.3
98,835 - +0.2
98,835 - +0.6
98,835 - -2.1
98,835 - -1.4
98,835 - -0.4
99,214 - -1.0
99,214 - -1.9
99,214 - -0.1
99,214 - +0.2
99,246 - -0.7
99,251 - -2.2
99,251 - -0.4
99,251 - -0.4
99,291 - -1.1
99,305 - -0.1
99,309 - -1.4
99,309 - -0.6
99,309 - -0.1
99,309 - -0.2
99,313 - -0.9
99,319 + -1.1
99,331 + -1.1
99,331 + -0.1
99,332 - -1.1
99,332 - -0.4
99,332 - +0.5
99,332 - -0.6
99,332 - -1.1
99,334 + -2.1
99,334 + -2.2
99,334 + -0.4
99,335 - -0.1
99,335 - -1.1
99,335 - -1.4
99,388 + GFF88 0.13 -0.6
99,389 - GFF88 0.14 -1.1
99,408 - GFF88 0.17 -0.6
99,502 - GFF88 0.31 -0.6
99,565 + GFF88 0.41 -0.4
99,634 + GFF88 0.52 +0.4
99,635 - GFF88 0.52 -1.1
99,635 - GFF88 0.52 -0.1
99,635 - GFF88 0.52 -0.1
99,771 + GFF88 0.74 -1.1
99,771 + GFF88 0.74 -1.4
99,772 - GFF88 0.74 +0.5
99,772 - GFF88 0.74 +0.3
99,772 - GFF88 0.74 +1.2
99,773 + GFF88 0.74 -1.4
99,781 - GFF88 0.76 -0.4

Or see this region's nucleotide sequence