Strain Fitness in Methylophilus sp. DMC18 around GFF644

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF643 and GFF644 are separated by 5 nucleotidesGFF644 and GFF645 are separated by 22 nucleotidesGFF645 and GFF646 are separated by 150 nucleotides GFF643 - Argininosuccinate synthase, at 714,201 to 715,424 GFF643 GFF644 - (R)-citramalate synthase, at 715,430 to 717,010 GFF644 GFF645 - hypothetical protein, at 717,033 to 717,821 GFF645 GFF646 - 3-isopropylmalate dehydratase large subunit, at 717,972 to 719,378 GFF646 Position (kb) 715 716 717 718Strain fitness (log2 ratio) -2 -1 0 1at 715.429 kb on + strandat 715.429 kb on + strandat 715.454 kb on + strandat 715.454 kb on + strandat 715.455 kb on - strandat 715.462 kb on + strandat 715.462 kb on + strandat 715.462 kb on + strandat 715.462 kb on + strandat 715.462 kb on + strandat 715.463 kb on - strandat 715.513 kb on + strandat 715.556 kb on + strandat 715.556 kb on + strandat 715.570 kb on + strandat 715.582 kb on + strandat 715.645 kb on + strand, within GFF644at 715.646 kb on - strand, within GFF644at 715.761 kb on - strand, within GFF644at 715.783 kb on + strand, within GFF644at 715.791 kb on + strand, within GFF644at 715.830 kb on - strand, within GFF644at 715.877 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.959 kb on + strand, within GFF644at 715.960 kb on - strand, within GFF644at 715.960 kb on - strand, within GFF644at 715.960 kb on - strand, within GFF644at 715.995 kb on + strand, within GFF644at 715.995 kb on + strand, within GFF644at 715.995 kb on + strand, within GFF644at 715.996 kb on - strand, within GFF644at 716.197 kb on - strand, within GFF644at 716.215 kb on + strand, within GFF644at 716.232 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.303 kb on + strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.304 kb on - strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.344 kb on + strand, within GFF644at 716.345 kb on - strand, within GFF644at 716.345 kb on - strand, within GFF644at 716.345 kb on - strand, within GFF644at 716.359 kb on + strand, within GFF644at 716.360 kb on - strand, within GFF644at 716.375 kb on + strand, within GFF644at 716.375 kb on + strand, within GFF644at 716.375 kb on + strand, within GFF644at 716.375 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.416 kb on + strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.417 kb on - strand, within GFF644at 716.549 kb on + strand, within GFF644at 716.549 kb on + strand, within GFF644at 716.550 kb on - strand, within GFF644at 716.550 kb on - strand, within GFF644at 716.636 kb on + strand, within GFF644at 716.637 kb on - strand, within GFF644at 716.637 kb on - strand, within GFF644at 716.647 kb on + strand, within GFF644at 716.647 kb on + strand, within GFF644at 716.647 kb on + strand, within GFF644at 716.648 kb on - strand, within GFF644at 716.651 kb on + strand, within GFF644at 716.652 kb on - strand, within GFF644at 716.691 kb on + strand, within GFF644at 716.691 kb on + strand, within GFF644at 716.691 kb on + strand, within GFF644at 716.692 kb on - strand, within GFF644at 716.692 kb on - strand, within GFF644at 716.773 kb on + strand, within GFF644at 716.825 kb on + strand, within GFF644at 716.871 kb on + strandat 716.871 kb on + strandat 716.871 kb on + strandat 716.872 kb on - strandat 716.978 kb on + strandat 716.978 kb on + strandat 716.978 kb on + strandat 716.978 kb on + strandat 716.979 kb on - strandat 717.008 kb on + strandat 717.088 kb on - strandat 717.352 kb on - strand, within GFF645at 717.352 kb on - strand, within GFF645at 717.359 kb on + strand, within GFF645at 717.393 kb on + strand, within GFF645at 717.394 kb on - strand, within GFF645at 717.394 kb on - strand, within GFF645at 717.460 kb on + strand, within GFF645at 717.460 kb on + strand, within GFF645at 717.461 kb on - strand, within GFF645at 717.461 kb on - strand, within GFF645at 717.568 kb on + strand, within GFF645at 717.568 kb on + strand, within GFF645at 717.568 kb on + strand, within GFF645at 717.569 kb on - strand, within GFF645at 717.569 kb on - strand, within GFF645at 717.569 kb on - strand, within GFF645at 717.569 kb on - strand, within GFF645at 717.569 kb on - strand, within GFF645at 717.569 kb on - strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.572 kb on + strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.573 kb on - strand, within GFF645at 717.654 kb on + strand, within GFF645at 717.712 kb on - strand, within GFF645at 717.786 kb on + strandat 717.892 kb on - strandat 717.892 kb on - strandat 717.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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715,429 + -0.3
715,429 + +0.6
715,454 + -0.1
715,454 + +1.1
715,455 - -0.0
715,462 + +0.5
715,462 + -0.7
715,462 + +0.6
715,462 + -0.4
715,462 + +0.1
715,463 - -0.7
715,513 + -0.1
715,556 + -0.2
715,556 + -0.6
715,570 + -1.7
715,582 + -0.0
715,645 + GFF644 0.14 -1.6
715,646 - GFF644 0.14 -0.1
715,761 - GFF644 0.21 -1.7
715,783 + GFF644 0.22 -0.1
715,791 + GFF644 0.23 +1.1
715,830 - GFF644 0.25 -0.5
715,877 + GFF644 0.28 -0.2
715,959 + GFF644 0.33 -1.9
715,959 + GFF644 0.33 -0.7
715,959 + GFF644 0.33 -0.1
715,959 + GFF644 0.33 -0.7
715,959 + GFF644 0.33 +0.4
715,959 + GFF644 0.33 -1.3
715,959 + GFF644 0.33 -1.2
715,959 + GFF644 0.33 +0.0
715,959 + GFF644 0.33 -0.1
715,959 + GFF644 0.33 -1.1
715,959 + GFF644 0.33 +0.9
715,960 - GFF644 0.34 -2.1
715,960 - GFF644 0.34 +0.1
715,960 - GFF644 0.34 +0.2
715,995 + GFF644 0.36 -1.1
715,995 + GFF644 0.36 +0.1
715,995 + GFF644 0.36 +0.6
715,996 - GFF644 0.36 -1.9
716,197 - GFF644 0.49 -1.9
716,215 + GFF644 0.50 -0.9
716,232 + GFF644 0.51 -0.2
716,303 + GFF644 0.55 -0.1
716,303 + GFF644 0.55 +0.2
716,303 + GFF644 0.55 +0.6
716,303 + GFF644 0.55 +0.2
716,303 + GFF644 0.55 -0.8
716,303 + GFF644 0.55 -0.8
716,303 + GFF644 0.55 +0.1
716,303 + GFF644 0.55 -1.9
716,303 + GFF644 0.55 -0.1
716,303 + GFF644 0.55 -0.7
716,303 + GFF644 0.55 -0.7
716,303 + GFF644 0.55 +0.4
716,303 + GFF644 0.55 -1.0
716,304 - GFF644 0.55 +0.6
716,304 - GFF644 0.55 -0.1
716,304 - GFF644 0.55 +0.1
716,304 - GFF644 0.55 -0.4
716,304 - GFF644 0.55 +0.6
716,304 - GFF644 0.55 -1.4
716,304 - GFF644 0.55 -0.8
716,304 - GFF644 0.55 +0.9
716,304 - GFF644 0.55 +0.5
716,344 + GFF644 0.58 -0.7
716,344 + GFF644 0.58 +0.7
716,344 + GFF644 0.58 -1.3
716,344 + GFF644 0.58 -0.5
716,344 + GFF644 0.58 -0.1
716,344 + GFF644 0.58 -0.2
716,344 + GFF644 0.58 -0.5
716,344 + GFF644 0.58 -0.5
716,344 + GFF644 0.58 +0.6
716,344 + GFF644 0.58 +0.6
716,345 - GFF644 0.58 +0.2
716,345 - GFF644 0.58 -0.9
716,345 - GFF644 0.58 -0.1
716,359 + GFF644 0.59 +0.2
716,360 - GFF644 0.59 -0.6
716,375 + GFF644 0.60 +0.5
716,375 + GFF644 0.60 +0.6
716,375 + GFF644 0.60 +0.2
716,375 + GFF644 0.60 +0.5
716,416 + GFF644 0.62 +0.2
716,416 + GFF644 0.62 -0.1
716,416 + GFF644 0.62 -0.8
716,416 + GFF644 0.62 -0.7
716,416 + GFF644 0.62 -0.1
716,416 + GFF644 0.62 +0.9
716,416 + GFF644 0.62 -0.1
716,416 + GFF644 0.62 -0.7
716,417 - GFF644 0.62 +0.5
716,417 - GFF644 0.62 -0.3
716,417 - GFF644 0.62 -0.3
716,417 - GFF644 0.62 -0.7
716,417 - GFF644 0.62 -1.4
716,417 - GFF644 0.62 -0.1
716,417 - GFF644 0.62 -0.7
716,417 - GFF644 0.62 -0.4
716,549 + GFF644 0.71 -0.1
716,549 + GFF644 0.71 -0.2
716,550 - GFF644 0.71 -0.9
716,550 - GFF644 0.71 +0.4
716,636 + GFF644 0.76 -0.1
716,637 - GFF644 0.76 -2.1
716,637 - GFF644 0.76 -1.1
716,647 + GFF644 0.77 -1.1
716,647 + GFF644 0.77 -1.7
716,647 + GFF644 0.77 +0.4
716,648 - GFF644 0.77 -0.1
716,651 + GFF644 0.77 +0.9
716,652 - GFF644 0.77 +0.7
716,691 + GFF644 0.80 +0.4
716,691 + GFF644 0.80 -0.6
716,691 + GFF644 0.80 -0.4
716,692 - GFF644 0.80 -0.2
716,692 - GFF644 0.80 -0.6
716,773 + GFF644 0.85 -2.0
716,825 + GFF644 0.88 -2.3
716,871 + -0.7
716,871 + -0.4
716,871 + +0.8
716,872 - -0.1
716,978 + -0.1
716,978 + +0.3
716,978 + -0.3
716,978 + -0.2
716,979 - -1.4
717,008 + -0.1
717,088 - -0.1
717,352 - GFF645 0.40 -1.4
717,352 - GFF645 0.40 -0.1
717,359 + GFF645 0.41 -1.1
717,393 + GFF645 0.46 -0.4
717,394 - GFF645 0.46 -0.6
717,394 - GFF645 0.46 -1.2
717,460 + GFF645 0.54 -1.1
717,460 + GFF645 0.54 -0.5
717,461 - GFF645 0.54 -1.1
717,461 - GFF645 0.54 -0.9
717,568 + GFF645 0.68 +1.2
717,568 + GFF645 0.68 +0.5
717,568 + GFF645 0.68 -1.1
717,569 - GFF645 0.68 +0.1
717,569 - GFF645 0.68 -0.1
717,569 - GFF645 0.68 -0.5
717,569 - GFF645 0.68 -0.4
717,569 - GFF645 0.68 -1.0
717,569 - GFF645 0.68 +0.5
717,572 + GFF645 0.68 -1.1
717,572 + GFF645 0.68 -0.7
717,572 + GFF645 0.68 +0.9
717,572 + GFF645 0.68 -1.1
717,572 + GFF645 0.68 -0.9
717,572 + GFF645 0.68 -1.0
717,572 + GFF645 0.68 -1.0
717,572 + GFF645 0.68 -1.9
717,573 - GFF645 0.68 -1.2
717,573 - GFF645 0.68 +0.2
717,573 - GFF645 0.68 -1.4
717,573 - GFF645 0.68 -0.7
717,573 - GFF645 0.68 -0.6
717,573 - GFF645 0.68 -0.1
717,573 - GFF645 0.68 -0.3
717,573 - GFF645 0.68 +0.1
717,573 - GFF645 0.68 +0.9
717,573 - GFF645 0.68 +0.8
717,573 - GFF645 0.68 -0.8
717,573 - GFF645 0.68 -1.0
717,573 - GFF645 0.68 +0.3
717,573 - GFF645 0.68 -1.2
717,573 - GFF645 0.68 -1.1
717,573 - GFF645 0.68 +0.8
717,654 + GFF645 0.79 +1.4
717,712 - GFF645 0.86 -0.1
717,786 + -1.1
717,892 - -1.6
717,892 - -0.1
717,944 + +0.2

Or see this region's nucleotide sequence