Strain Fitness in Methylophilus sp. DMC18 around GFF548

Experiment: dNMS no carbon

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF547 and GFF548 overlap by 1 nucleotidesGFF548 and GFF549 are separated by 15 nucleotidesGFF549 and GFF550 are separated by 81 nucleotides GFF547 - Flagellar motor switch protein FliM, at 604,522 to 605,526 GFF547 GFF548 - Flagellar motor switch protein FliN, at 605,526 to 606,011 GFF548 GFF549 - hypothetical protein, at 606,027 to 606,554 GFF549 GFF550 - Flagellar biosynthetic protein FliP, at 606,636 to 607,430 GFF550 Position (kb) 605 606 607Strain fitness (log2 ratio) -2 -1 0 1at 604.633 kb on + strand, within GFF547at 604.633 kb on + strand, within GFF547at 604.634 kb on - strand, within GFF547at 604.634 kb on - strand, within GFF547at 604.636 kb on - strand, within GFF547at 604.693 kb on - strand, within GFF547at 604.747 kb on - strand, within GFF547at 604.786 kb on + strand, within GFF547at 604.786 kb on + strand, within GFF547at 604.786 kb on + strand, within GFF547at 604.787 kb on - strand, within GFF547at 604.798 kb on - strand, within GFF547at 604.798 kb on - strand, within GFF547at 604.839 kb on + strand, within GFF547at 604.840 kb on - strand, within GFF547at 604.908 kb on + strand, within GFF547at 604.908 kb on + strand, within GFF547at 604.908 kb on + strand, within GFF547at 604.908 kb on + strand, within GFF547at 604.908 kb on + strand, within GFF547at 604.908 kb on + strand, within GFF547at 604.908 kb on + strand, within GFF547at 604.909 kb on - strand, within GFF547at 604.909 kb on - strand, within GFF547at 604.909 kb on - strand, within GFF547at 604.909 kb on - strand, within GFF547at 604.999 kb on - strand, within GFF547at 605.035 kb on - strand, within GFF547at 605.056 kb on + strand, within GFF547at 605.056 kb on + strand, within GFF547at 605.124 kb on + strand, within GFF547at 605.124 kb on + strand, within GFF547at 605.124 kb on + strand, within GFF547at 605.130 kb on + strand, within GFF547at 605.148 kb on + strand, within GFF547at 605.148 kb on + strand, within GFF547at 605.148 kb on + strand, within GFF547at 605.149 kb on - strand, within GFF547at 605.149 kb on - strand, within GFF547at 605.179 kb on + strand, within GFF547at 605.179 kb on + strand, within GFF547at 605.179 kb on + strand, within GFF547at 605.179 kb on + strand, within GFF547at 605.179 kb on + strand, within GFF547at 605.380 kb on - strand, within GFF547at 605.380 kb on - strand, within GFF547at 605.388 kb on + strand, within GFF547at 605.455 kb on + strandat 605.455 kb on + strandat 605.455 kb on + strandat 605.456 kb on - strandat 605.480 kb on + strandat 605.493 kb on + strandat 605.496 kb on + strandat 605.497 kb on - strandat 605.524 kb on + strandat 605.525 kb on - strandat 605.525 kb on - strandat 605.549 kb on + strandat 605.549 kb on + strandat 605.549 kb on + strandat 605.550 kb on - strandat 605.550 kb on - strandat 605.552 kb on + strandat 605.552 kb on + strandat 605.553 kb on - strandat 605.794 kb on + strand, within GFF548at 605.794 kb on + strand, within GFF548at 605.893 kb on + strand, within GFF548at 605.893 kb on + strand, within GFF548at 605.893 kb on + strand, within GFF548at 605.893 kb on + strand, within GFF548at 605.893 kb on + strand, within GFF548at 605.893 kb on + strand, within GFF548at 605.893 kb on + strand, within GFF548at 605.894 kb on - strand, within GFF548at 605.896 kb on + strand, within GFF548at 605.896 kb on + strand, within GFF548at 605.897 kb on - strand, within GFF548at 605.990 kb on + strandat 605.990 kb on + strandat 606.032 kb on + strandat 606.032 kb on + strandat 606.032 kb on + strandat 606.032 kb on + strandat 606.135 kb on - strand, within GFF549at 606.240 kb on + strand, within GFF549at 606.561 kb on + strandat 606.562 kb on - strandat 606.594 kb on + strandat 606.594 kb on + strandat 606.594 kb on + strandat 606.594 kb on + strandat 606.595 kb on - strandat 606.595 kb on - strandat 606.595 kb on - strandat 606.600 kb on - strandat 606.605 kb on + strandat 606.610 kb on + strandat 606.611 kb on - strandat 606.611 kb on - strandat 606.611 kb on - strandat 606.616 kb on - strandat 606.724 kb on + strand, within GFF550at 606.804 kb on + strand, within GFF550at 606.805 kb on - strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.807 kb on - strand, within GFF550at 606.807 kb on - strand, within GFF550at 606.885 kb on - strand, within GFF550at 606.885 kb on - strand, within GFF550at 606.913 kb on + strand, within GFF550at 606.955 kb on + strand, within GFF550at 606.956 kb on - strand, within GFF550at 606.956 kb on - strand, within GFF550at 606.962 kb on - strand, within GFF550at 606.962 kb on - strand, within GFF550at 606.977 kb on + strand, within GFF550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
remove
604,633 + GFF547 0.11 -1.2
604,633 + GFF547 0.11 -0.7
604,634 - GFF547 0.11 -1.1
604,634 - GFF547 0.11 +0.2
604,636 - GFF547 0.11 -1.1
604,693 - GFF547 0.17 -0.1
604,747 - GFF547 0.22 +0.5
604,786 + GFF547 0.26 +0.9
604,786 + GFF547 0.26 -1.1
604,786 + GFF547 0.26 -1.5
604,787 - GFF547 0.26 -0.1
604,798 - GFF547 0.27 -0.3
604,798 - GFF547 0.27 +0.9
604,839 + GFF547 0.32 +0.8
604,840 - GFF547 0.32 -1.3
604,908 + GFF547 0.38 -0.4
604,908 + GFF547 0.38 +0.3
604,908 + GFF547 0.38 +0.3
604,908 + GFF547 0.38 -0.5
604,908 + GFF547 0.38 -0.7
604,908 + GFF547 0.38 +1.2
604,908 + GFF547 0.38 +0.1
604,909 - GFF547 0.39 -1.1
604,909 - GFF547 0.39 +0.9
604,909 - GFF547 0.39 -0.1
604,909 - GFF547 0.39 -1.3
604,999 - GFF547 0.47 -0.5
605,035 - GFF547 0.51 -0.9
605,056 + GFF547 0.53 -1.7
605,056 + GFF547 0.53 -1.1
605,124 + GFF547 0.60 +0.1
605,124 + GFF547 0.60 +1.2
605,124 + GFF547 0.60 -0.4
605,130 + GFF547 0.60 -1.7
605,148 + GFF547 0.62 +0.3
605,148 + GFF547 0.62 -0.5
605,148 + GFF547 0.62 -0.1
605,149 - GFF547 0.62 +0.4
605,149 - GFF547 0.62 -2.1
605,179 + GFF547 0.65 -0.4
605,179 + GFF547 0.65 +0.6
605,179 + GFF547 0.65 -0.2
605,179 + GFF547 0.65 -0.9
605,179 + GFF547 0.65 -1.7
605,380 - GFF547 0.85 +0.3
605,380 - GFF547 0.85 -0.6
605,388 + GFF547 0.86 +1.2
605,455 + -1.7
605,455 + -1.1
605,455 + -0.5
605,456 - +1.1
605,480 + -0.4
605,493 + +1.2
605,496 + -0.8
605,497 - +0.3
605,524 + -0.3
605,525 - -1.1
605,525 - -0.7
605,549 + +0.5
605,549 + +0.5
605,549 + +0.9
605,550 - +0.9
605,550 - -0.1
605,552 + -1.1
605,552 + -1.4
605,553 - -1.9
605,794 + GFF548 0.55 +1.2
605,794 + GFF548 0.55 +0.3
605,893 + GFF548 0.76 -0.2
605,893 + GFF548 0.76 +1.1
605,893 + GFF548 0.76 -0.1
605,893 + GFF548 0.76 -0.5
605,893 + GFF548 0.76 -0.9
605,893 + GFF548 0.76 +1.1
605,893 + GFF548 0.76 +0.2
605,894 - GFF548 0.76 -0.7
605,896 + GFF548 0.76 +0.0
605,896 + GFF548 0.76 -2.1
605,897 - GFF548 0.76 +1.2
605,990 + -0.1
605,990 + -0.1
606,032 + +0.4
606,032 + -1.4
606,032 + -0.3
606,032 + -0.9
606,135 - GFF549 0.20 -0.4
606,240 + GFF549 0.40 -0.9
606,561 + -0.4
606,562 - +1.3
606,594 + -0.1
606,594 + -0.6
606,594 + -0.1
606,594 + -0.3
606,595 - -0.7
606,595 - +0.8
606,595 - +0.3
606,600 - +0.2
606,605 + -0.7
606,610 + -1.4
606,611 - -1.1
606,611 - -0.8
606,611 - +0.5
606,616 - -0.9
606,724 + GFF550 0.11 -0.2
606,804 + GFF550 0.21 -1.1
606,805 - GFF550 0.21 -1.7
606,806 + GFF550 0.21 -0.0
606,806 + GFF550 0.21 -0.7
606,806 + GFF550 0.21 +0.4
606,806 + GFF550 0.21 -0.5
606,806 + GFF550 0.21 +0.1
606,806 + GFF550 0.21 -2.5
606,806 + GFF550 0.21 +0.1
606,806 + GFF550 0.21 +0.1
606,806 + GFF550 0.21 -1.2
606,807 - GFF550 0.22 -1.5
606,807 - GFF550 0.22 +0.4
606,885 - GFF550 0.31 -1.4
606,885 - GFF550 0.31 +0.3
606,913 + GFF550 0.35 -0.7
606,955 + GFF550 0.40 -0.7
606,956 - GFF550 0.40 -0.1
606,956 - GFF550 0.40 -0.3
606,962 - GFF550 0.41 -1.3
606,962 - GFF550 0.41 -0.1
606,977 + GFF550 0.43 +0.2

Or see this region's nucleotide sequence