Strain Fitness in Methylophilus sp. DMC18 around GFF403

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF402 and GFF403 are separated by 57 nucleotidesGFF403 and GFF404 are separated by 1 nucleotides GFF402 - Sulfate transport system permease protein CysT, at 448,247 to 449,080 GFF402 GFF403 - Sulfate transport system permease protein CysW, at 449,138 to 450,028 GFF403 GFF404 - Sulfate/thiosulfate import ATP-binding protein CysA, at 450,030 to 451,007 GFF404 Position (kb) 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 448.151 kb on - strandat 448.212 kb on + strandat 448.212 kb on + strandat 448.212 kb on + strandat 448.212 kb on + strandat 448.212 kb on + strandat 448.212 kb on + strandat 448.212 kb on + strandat 448.213 kb on - strandat 448.213 kb on - strandat 448.213 kb on - strandat 448.213 kb on - strandat 448.213 kb on - strandat 448.215 kb on - strandat 448.215 kb on - strandat 448.242 kb on - strandat 448.272 kb on + strandat 448.273 kb on - strandat 448.324 kb on + strandat 448.341 kb on + strand, within GFF402at 448.372 kb on + strand, within GFF402at 448.372 kb on + strand, within GFF402at 448.373 kb on - strand, within GFF402at 448.373 kb on - strand, within GFF402at 448.420 kb on + strand, within GFF402at 448.421 kb on - strand, within GFF402at 448.424 kb on + strand, within GFF402at 448.424 kb on + strand, within GFF402at 448.425 kb on - strand, within GFF402at 448.432 kb on - strand, within GFF402at 448.466 kb on - strand, within GFF402at 448.474 kb on - strand, within GFF402at 448.509 kb on - strand, within GFF402at 448.545 kb on + strand, within GFF402at 448.649 kb on - strand, within GFF402at 448.723 kb on - strand, within GFF402at 448.723 kb on - strand, within GFF402at 448.744 kb on + strand, within GFF402at 448.745 kb on - strand, within GFF402at 448.836 kb on + strand, within GFF402at 448.836 kb on + strand, within GFF402at 448.880 kb on + strand, within GFF402at 448.881 kb on - strand, within GFF402at 448.939 kb on + strand, within GFF402at 448.939 kb on + strand, within GFF402at 448.964 kb on + strand, within GFF402at 448.964 kb on + strand, within GFF402at 448.964 kb on + strand, within GFF402at 448.964 kb on + strand, within GFF402at 448.965 kb on - strand, within GFF402at 448.970 kb on + strand, within GFF402at 449.079 kb on - strandat 449.100 kb on + strandat 449.100 kb on + strandat 449.101 kb on - strandat 449.111 kb on - strandat 449.127 kb on + strandat 449.127 kb on + strandat 449.128 kb on - strandat 449.131 kb on + strandat 449.131 kb on + strandat 449.131 kb on + strandat 449.131 kb on + strandat 449.132 kb on - strandat 449.132 kb on - strandat 449.132 kb on - strandat 449.132 kb on - strandat 449.180 kb on + strandat 449.181 kb on - strandat 449.284 kb on + strand, within GFF403at 449.315 kb on + strand, within GFF403at 449.315 kb on + strand, within GFF403at 449.316 kb on - strand, within GFF403at 449.316 kb on - strand, within GFF403at 449.316 kb on - strand, within GFF403at 449.319 kb on + strand, within GFF403at 449.319 kb on + strand, within GFF403at 449.320 kb on - strand, within GFF403at 449.320 kb on - strand, within GFF403at 449.320 kb on - strand, within GFF403at 449.320 kb on - strand, within GFF403at 449.320 kb on - strand, within GFF403at 449.404 kb on - strand, within GFF403at 449.404 kb on - strand, within GFF403at 449.587 kb on - strand, within GFF403at 449.587 kb on - strand, within GFF403at 449.885 kb on + strand, within GFF403at 449.885 kb on + strand, within GFF403at 449.894 kb on + strand, within GFF403at 449.894 kb on + strand, within GFF403at 449.894 kb on + strand, within GFF403at 449.896 kb on + strand, within GFF403at 449.896 kb on + strand, within GFF403at 449.896 kb on + strand, within GFF403at 449.896 kb on + strand, within GFF403at 449.897 kb on - strand, within GFF403at 449.900 kb on + strand, within GFF403at 449.900 kb on + strand, within GFF403at 449.969 kb on + strandat 449.969 kb on + strandat 449.970 kb on - strandat 449.970 kb on - strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.038 kb on + strandat 450.038 kb on + strandat 450.039 kb on - strandat 450.043 kb on + strandat 450.074 kb on + strandat 450.075 kb on - strandat 450.164 kb on - strand, within GFF404at 450.170 kb on + strand, within GFF404at 450.221 kb on - strand, within GFF404at 450.400 kb on + strand, within GFF404at 450.601 kb on + strand, within GFF404at 450.601 kb on + strand, within GFF404at 450.602 kb on - strand, within GFF404at 450.602 kb on - strand, within GFF404at 450.644 kb on + strand, within GFF404at 450.703 kb on - strand, within GFF404at 450.729 kb on + strand, within GFF404at 450.748 kb on + strand, within GFF404at 450.748 kb on + strand, within GFF404at 450.748 kb on + strand, within GFF404at 450.748 kb on + strand, within GFF404at 450.748 kb on + strand, within GFF404at 450.749 kb on - strand, within GFF404at 450.749 kb on - strand, within GFF404at 450.749 kb on - strand, within GFF404at 450.792 kb on + strand, within GFF404at 450.792 kb on + strand, within GFF404at 450.793 kb on - strand, within GFF404at 450.793 kb on - strand, within GFF404at 450.793 kb on - strand, within GFF404at 450.793 kb on - strand, within GFF404at 450.830 kb on + strand, within GFF404at 450.830 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.849 kb on + strand, within GFF404at 450.850 kb on - strand, within GFF404at 450.850 kb on - strand, within GFF404at 450.850 kb on - strand, within GFF404at 450.850 kb on - strand, within GFF404at 450.850 kb on - strand, within GFF404at 450.850 kb on - strand, within GFF404at 450.909 kb on + strand, within GFF404at 450.909 kb on + strand, within GFF404at 450.909 kb on + strand, within GFF404at 450.909 kb on + strand, within GFF404at 450.910 kb on - strandat 450.910 kb on - strandat 450.910 kb on - strandat 450.910 kb on - strandat 450.910 kb on - strandat 450.910 kb on - strandat 450.910 kb on - strandat 450.910 kb on - strandat 450.910 kb on - strandat 450.956 kb on + strandat 450.957 kb on - strandat 450.975 kb on + strandat 450.975 kb on + strandat 450.975 kb on + strandat 450.976 kb on - strandat 450.976 kb on - strandat 451.010 kb on + strandat 451.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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448,151 - -0.5
448,212 + -1.4
448,212 + +0.5
448,212 + +0.2
448,212 + -1.7
448,212 + -0.3
448,212 + -2.1
448,212 + -1.4
448,213 - -1.7
448,213 - -0.6
448,213 - -0.7
448,213 - -1.4
448,213 - +0.1
448,215 - -0.3
448,215 - -0.1
448,242 - -0.4
448,272 + -1.1
448,273 - -0.5
448,324 + -1.3
448,341 + GFF402 0.11 -0.6
448,372 + GFF402 0.15 +1.4
448,372 + GFF402 0.15 -1.4
448,373 - GFF402 0.15 -0.9
448,373 - GFF402 0.15 -1.4
448,420 + GFF402 0.21 -1.4
448,421 - GFF402 0.21 -0.1
448,424 + GFF402 0.21 -0.1
448,424 + GFF402 0.21 +0.3
448,425 - GFF402 0.21 -0.9
448,432 - GFF402 0.22 -1.4
448,466 - GFF402 0.26 -0.4
448,474 - GFF402 0.27 -0.6
448,509 - GFF402 0.31 +0.2
448,545 + GFF402 0.36 -0.6
448,649 - GFF402 0.48 -1.1
448,723 - GFF402 0.57 -0.0
448,723 - GFF402 0.57 -1.2
448,744 + GFF402 0.60 -0.1
448,745 - GFF402 0.60 +1.4
448,836 + GFF402 0.71 -0.1
448,836 + GFF402 0.71 +0.6
448,880 + GFF402 0.76 -0.5
448,881 - GFF402 0.76 -0.1
448,939 + GFF402 0.83 +0.1
448,939 + GFF402 0.83 +0.1
448,964 + GFF402 0.86 -1.4
448,964 + GFF402 0.86 -0.5
448,964 + GFF402 0.86 -1.5
448,964 + GFF402 0.86 +0.5
448,965 - GFF402 0.86 -0.1
448,970 + GFF402 0.87 +0.7
449,079 - +1.4
449,100 + -0.1
449,100 + -1.0
449,101 - -1.4
449,111 - -0.2
449,127 + -0.5
449,127 + -0.2
449,128 - +0.1
449,131 + -1.3
449,131 + -0.1
449,131 + +0.3
449,131 + +0.3
449,132 - +0.7
449,132 - +0.5
449,132 - -0.6
449,132 - -1.3
449,180 + -1.4
449,181 - -0.3
449,284 + GFF403 0.16 +0.1
449,315 + GFF403 0.20 -0.4
449,315 + GFF403 0.20 -1.2
449,316 - GFF403 0.20 -0.8
449,316 - GFF403 0.20 -1.8
449,316 - GFF403 0.20 -0.4
449,319 + GFF403 0.20 -1.1
449,319 + GFF403 0.20 +1.2
449,320 - GFF403 0.20 -0.1
449,320 - GFF403 0.20 -1.4
449,320 - GFF403 0.20 -1.1
449,320 - GFF403 0.20 -1.7
449,320 - GFF403 0.20 -0.7
449,404 - GFF403 0.30 -0.2
449,404 - GFF403 0.30 -1.7
449,587 - GFF403 0.50 -1.1
449,587 - GFF403 0.50 -0.1
449,885 + GFF403 0.84 -0.1
449,885 + GFF403 0.84 -1.1
449,894 + GFF403 0.85 +0.9
449,894 + GFF403 0.85 -1.5
449,894 + GFF403 0.85 -0.4
449,896 + GFF403 0.85 +0.5
449,896 + GFF403 0.85 -0.8
449,896 + GFF403 0.85 +0.7
449,896 + GFF403 0.85 -2.2
449,897 - GFF403 0.85 +0.3
449,900 + GFF403 0.86 -0.4
449,900 + GFF403 0.86 -1.1
449,969 + +0.0
449,969 + -1.7
449,970 - -0.7
449,970 - -0.4
450,026 + -0.6
450,026 + -2.2
450,038 + -0.4
450,038 + +0.3
450,039 - -0.1
450,043 + +0.7
450,074 + +2.1
450,075 - -0.2
450,164 - GFF404 0.14 -1.6
450,170 + GFF404 0.14 -0.2
450,221 - GFF404 0.20 +0.9
450,400 + GFF404 0.38 -0.6
450,601 + GFF404 0.58 +0.2
450,601 + GFF404 0.58 -0.6
450,602 - GFF404 0.58 -0.4
450,602 - GFF404 0.58 +0.2
450,644 + GFF404 0.63 -1.4
450,703 - GFF404 0.69 +0.7
450,729 + GFF404 0.71 +0.0
450,748 + GFF404 0.73 +0.3
450,748 + GFF404 0.73 -0.9
450,748 + GFF404 0.73 -1.2
450,748 + GFF404 0.73 -0.2
450,748 + GFF404 0.73 -0.1
450,749 - GFF404 0.74 -2.2
450,749 - GFF404 0.74 +0.6
450,749 - GFF404 0.74 -0.1
450,792 + GFF404 0.78 +0.2
450,792 + GFF404 0.78 -1.3
450,793 - GFF404 0.78 -1.1
450,793 - GFF404 0.78 +1.1
450,793 - GFF404 0.78 +1.2
450,793 - GFF404 0.78 -1.1
450,830 + GFF404 0.82 +0.1
450,830 + GFF404 0.82 -0.7
450,849 + GFF404 0.84 -0.9
450,849 + GFF404 0.84 +0.8
450,849 + GFF404 0.84 -0.4
450,849 + GFF404 0.84 +0.9
450,849 + GFF404 0.84 -0.2
450,849 + GFF404 0.84 -0.1
450,849 + GFF404 0.84 -0.8
450,849 + GFF404 0.84 -0.1
450,849 + GFF404 0.84 -0.0
450,849 + GFF404 0.84 -1.7
450,849 + GFF404 0.84 +0.2
450,849 + GFF404 0.84 +0.5
450,850 - GFF404 0.84 +0.2
450,850 - GFF404 0.84 +0.6
450,850 - GFF404 0.84 -1.5
450,850 - GFF404 0.84 +0.5
450,850 - GFF404 0.84 -1.9
450,850 - GFF404 0.84 +0.5
450,909 + GFF404 0.90 -1.1
450,909 + GFF404 0.90 -0.7
450,909 + GFF404 0.90 -0.3
450,909 + GFF404 0.90 +0.2
450,910 - +0.7
450,910 - -1.4
450,910 - -0.9
450,910 - -0.8
450,910 - -1.1
450,910 - -0.9
450,910 - -2.8
450,910 - +0.0
450,910 - -0.9
450,956 + -0.7
450,957 - -0.6
450,975 + -0.1
450,975 + -0.9
450,975 + -0.7
450,976 - +0.5
450,976 - -0.9
451,010 + -0.8
451,011 - -0.1

Or see this region's nucleotide sequence