Strain Fitness in Methylophilus sp. DMC18 around GFF2153

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2151 and GFF2152 overlap by 8 nucleotidesGFF2152 and GFF2153 are separated by 17 nucleotidesGFF2153 and GFF2154 are separated by 192 nucleotides GFF2151 - hypothetical protein, at 197,601 to 198,620 GFF2151 GFF2152 - Transcriptional regulatory protein YpdB, at 198,613 to 199,359 GFF2152 GFF2153 - hypothetical protein, at 199,377 to 200,048 GFF2153 GFF2154 - Porphobilinogen deaminase, at 200,241 to 201,185 GFF2154 Position (kb) 199 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1at 198.392 kb on + strand, within GFF2151at 198.392 kb on + strand, within GFF2151at 198.393 kb on - strand, within GFF2151at 198.393 kb on - strand, within GFF2151at 198.393 kb on - strand, within GFF2151at 198.433 kb on + strand, within GFF2151at 198.476 kb on + strand, within GFF2151at 198.477 kb on - strand, within GFF2151at 198.494 kb on + strand, within GFF2151at 198.495 kb on - strand, within GFF2151at 198.495 kb on - strand, within GFF2151at 198.519 kb on + strandat 198.564 kb on + strandat 198.564 kb on + strandat 198.564 kb on + strandat 198.564 kb on + strandat 198.564 kb on + strandat 198.564 kb on + strandat 198.564 kb on + strandat 198.565 kb on - strandat 198.565 kb on - strandat 198.566 kb on + strandat 198.567 kb on - strandat 198.697 kb on + strand, within GFF2152at 198.868 kb on + strand, within GFF2152at 198.868 kb on + strand, within GFF2152at 198.868 kb on + strand, within GFF2152at 198.869 kb on - strand, within GFF2152at 198.869 kb on - strand, within GFF2152at 198.869 kb on - strand, within GFF2152at 198.869 kb on - strand, within GFF2152at 198.878 kb on - strand, within GFF2152at 198.913 kb on + strand, within GFF2152at 198.913 kb on + strand, within GFF2152at 198.913 kb on + strand, within GFF2152at 198.913 kb on + strand, within GFF2152at 198.913 kb on + strand, within GFF2152at 198.913 kb on + strand, within GFF2152at 198.913 kb on + strand, within GFF2152at 198.914 kb on - strand, within GFF2152at 198.914 kb on - strand, within GFF2152at 199.028 kb on + strand, within GFF2152at 199.028 kb on + strand, within GFF2152at 199.028 kb on + strand, within GFF2152at 199.028 kb on + strand, within GFF2152at 199.028 kb on + strand, within GFF2152at 199.029 kb on - strand, within GFF2152at 199.029 kb on - strand, within GFF2152at 199.029 kb on - strand, within GFF2152at 199.029 kb on - strand, within GFF2152at 199.081 kb on + strand, within GFF2152at 199.081 kb on + strand, within GFF2152at 199.081 kb on + strand, within GFF2152at 199.082 kb on - strand, within GFF2152at 199.082 kb on - strand, within GFF2152at 199.082 kb on - strand, within GFF2152at 199.082 kb on - strand, within GFF2152at 199.102 kb on + strand, within GFF2152at 199.102 kb on + strand, within GFF2152at 199.102 kb on + strand, within GFF2152at 199.102 kb on + strand, within GFF2152at 199.102 kb on + strand, within GFF2152at 199.102 kb on + strand, within GFF2152at 199.103 kb on - strand, within GFF2152at 199.103 kb on - strand, within GFF2152at 199.103 kb on - strand, within GFF2152at 199.103 kb on - strand, within GFF2152at 199.103 kb on - strand, within GFF2152at 199.103 kb on - strand, within GFF2152at 199.103 kb on - strand, within GFF2152at 199.108 kb on - strand, within GFF2152at 199.133 kb on - strand, within GFF2152at 199.136 kb on + strand, within GFF2152at 199.136 kb on + strand, within GFF2152at 199.137 kb on - strand, within GFF2152at 199.137 kb on - strand, within GFF2152at 199.192 kb on - strand, within GFF2152at 199.192 kb on - strand, within GFF2152at 199.192 kb on - strand, within GFF2152at 199.193 kb on + strand, within GFF2152at 199.193 kb on + strand, within GFF2152at 199.193 kb on + strand, within GFF2152at 199.194 kb on - strand, within GFF2152at 199.194 kb on - strand, within GFF2152at 199.194 kb on - strand, within GFF2152at 199.194 kb on - strand, within GFF2152at 199.194 kb on - strand, within GFF2152at 199.296 kb on + strandat 199.296 kb on + strandat 199.296 kb on + strandat 199.297 kb on - strandat 199.297 kb on - strandat 199.303 kb on - strandat 199.347 kb on + strandat 199.347 kb on + strandat 199.348 kb on - strandat 199.348 kb on - strandat 199.348 kb on - strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.357 kb on + strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.358 kb on - strandat 199.361 kb on + strandat 199.361 kb on + strandat 199.361 kb on + strandat 199.361 kb on + strandat 199.361 kb on + strandat 199.370 kb on + strandat 199.370 kb on + strandat 199.370 kb on + strandat 199.404 kb on + strandat 199.404 kb on + strandat 199.404 kb on + strandat 199.405 kb on - strandat 199.405 kb on - strandat 199.459 kb on - strand, within GFF2153at 199.488 kb on + strand, within GFF2153at 199.488 kb on + strand, within GFF2153at 199.488 kb on + strand, within GFF2153at 199.489 kb on - strand, within GFF2153at 199.489 kb on - strand, within GFF2153at 199.489 kb on - strand, within GFF2153at 199.497 kb on + strand, within GFF2153at 199.497 kb on + strand, within GFF2153at 199.498 kb on - strand, within GFF2153at 199.498 kb on - strand, within GFF2153at 199.498 kb on - strand, within GFF2153at 199.518 kb on + strand, within GFF2153at 199.518 kb on + strand, within GFF2153at 199.518 kb on + strand, within GFF2153at 199.519 kb on - strand, within GFF2153at 199.519 kb on - strand, within GFF2153at 199.561 kb on + strand, within GFF2153at 199.561 kb on + strand, within GFF2153at 199.561 kb on + strand, within GFF2153at 199.562 kb on - strand, within GFF2153at 199.562 kb on - strand, within GFF2153at 199.581 kb on + strand, within GFF2153at 199.581 kb on + strand, within GFF2153at 199.637 kb on + strand, within GFF2153at 199.638 kb on - strand, within GFF2153at 199.650 kb on + strand, within GFF2153at 199.650 kb on + strand, within GFF2153at 199.651 kb on - strand, within GFF2153at 199.651 kb on - strand, within GFF2153at 199.651 kb on - strand, within GFF2153at 199.651 kb on - strand, within GFF2153at 199.699 kb on + strand, within GFF2153at 199.699 kb on + strand, within GFF2153at 199.700 kb on - strand, within GFF2153at 199.700 kb on - strand, within GFF2153at 199.716 kb on + strand, within GFF2153at 199.717 kb on - strand, within GFF2153at 199.717 kb on - strand, within GFF2153at 199.789 kb on + strand, within GFF2153at 199.789 kb on + strand, within GFF2153at 199.789 kb on + strand, within GFF2153at 199.790 kb on - strand, within GFF2153at 199.790 kb on - strand, within GFF2153at 199.790 kb on - strand, within GFF2153at 199.794 kb on + strand, within GFF2153at 199.794 kb on + strand, within GFF2153at 199.794 kb on + strand, within GFF2153at 199.794 kb on + strand, within GFF2153at 199.795 kb on - strand, within GFF2153at 199.795 kb on - strand, within GFF2153at 199.795 kb on - strand, within GFF2153at 199.805 kb on + strand, within GFF2153at 199.806 kb on - strand, within GFF2153at 199.806 kb on - strand, within GFF2153at 199.806 kb on - strand, within GFF2153at 199.829 kb on - strand, within GFF2153at 199.829 kb on - strand, within GFF2153at 199.829 kb on - strand, within GFF2153at 199.829 kb on - strand, within GFF2153at 199.829 kb on - strand, within GFF2153at 199.844 kb on + strand, within GFF2153at 199.844 kb on + strand, within GFF2153at 199.845 kb on - strand, within GFF2153at 199.845 kb on - strand, within GFF2153at 199.902 kb on - strand, within GFF2153at 199.972 kb on - strand, within GFF2153at 199.990 kb on - strandat 200.041 kb on + strandat 200.042 kb on - strandat 200.042 kb on - strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.053 kb on - strandat 200.053 kb on - strandat 200.053 kb on - strandat 200.053 kb on - strandat 200.065 kb on + strandat 200.066 kb on - strandat 200.071 kb on + strandat 200.071 kb on + strandat 200.121 kb on + strandat 200.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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198,392 + GFF2151 0.78 +0.4
198,392 + GFF2151 0.78 +0.1
198,393 - GFF2151 0.78 -0.2
198,393 - GFF2151 0.78 +0.1
198,393 - GFF2151 0.78 -0.3
198,433 + GFF2151 0.82 -0.2
198,476 + GFF2151 0.86 -2.3
198,477 - GFF2151 0.86 +0.1
198,494 + GFF2151 0.88 -1.2
198,495 - GFF2151 0.88 +0.4
198,495 - GFF2151 0.88 -1.0
198,519 + +0.1
198,564 + +0.6
198,564 + -1.2
198,564 + -0.3
198,564 + +0.2
198,564 + -0.1
198,564 + -0.2
198,564 + -0.2
198,565 - +0.4
198,565 - -0.9
198,566 + -0.7
198,567 - -1.2
198,697 + GFF2152 0.11 -0.1
198,868 + GFF2152 0.34 -0.1
198,868 + GFF2152 0.34 -0.1
198,868 + GFF2152 0.34 +0.9
198,869 - GFF2152 0.34 -0.5
198,869 - GFF2152 0.34 +0.1
198,869 - GFF2152 0.34 +0.7
198,869 - GFF2152 0.34 +0.1
198,878 - GFF2152 0.35 -0.6
198,913 + GFF2152 0.40 -0.2
198,913 + GFF2152 0.40 +1.1
198,913 + GFF2152 0.40 -0.2
198,913 + GFF2152 0.40 -0.3
198,913 + GFF2152 0.40 -1.6
198,913 + GFF2152 0.40 +0.2
198,913 + GFF2152 0.40 +0.7
198,914 - GFF2152 0.40 -1.3
198,914 - GFF2152 0.40 +0.1
199,028 + GFF2152 0.56 +0.2
199,028 + GFF2152 0.56 -0.3
199,028 + GFF2152 0.56 +0.2
199,028 + GFF2152 0.56 -0.9
199,028 + GFF2152 0.56 -1.1
199,029 - GFF2152 0.56 -0.4
199,029 - GFF2152 0.56 -0.2
199,029 - GFF2152 0.56 +0.6
199,029 - GFF2152 0.56 -0.5
199,081 + GFF2152 0.63 -0.7
199,081 + GFF2152 0.63 -0.2
199,081 + GFF2152 0.63 -2.9
199,082 - GFF2152 0.63 -0.9
199,082 - GFF2152 0.63 -1.2
199,082 - GFF2152 0.63 +0.1
199,082 - GFF2152 0.63 -0.7
199,102 + GFF2152 0.65 -1.3
199,102 + GFF2152 0.65 -1.4
199,102 + GFF2152 0.65 -0.3
199,102 + GFF2152 0.65 -0.0
199,102 + GFF2152 0.65 -2.9
199,102 + GFF2152 0.65 +0.4
199,103 - GFF2152 0.66 -0.5
199,103 - GFF2152 0.66 -1.4
199,103 - GFF2152 0.66 -0.3
199,103 - GFF2152 0.66 +0.1
199,103 - GFF2152 0.66 +0.3
199,103 - GFF2152 0.66 -0.2
199,103 - GFF2152 0.66 +0.3
199,108 - GFF2152 0.66 -1.5
199,133 - GFF2152 0.70 -0.8
199,136 + GFF2152 0.70 +0.2
199,136 + GFF2152 0.70 -1.7
199,137 - GFF2152 0.70 -0.7
199,137 - GFF2152 0.70 +0.4
199,192 - GFF2152 0.78 +1.2
199,192 - GFF2152 0.78 +0.5
199,192 - GFF2152 0.78 +0.8
199,193 + GFF2152 0.78 -0.2
199,193 + GFF2152 0.78 -0.8
199,193 + GFF2152 0.78 -0.9
199,194 - GFF2152 0.78 -0.6
199,194 - GFF2152 0.78 -1.3
199,194 - GFF2152 0.78 -0.7
199,194 - GFF2152 0.78 -0.3
199,194 - GFF2152 0.78 -1.5
199,296 + +0.4
199,296 + +0.2
199,296 + +0.5
199,297 - -0.4
199,297 - +0.2
199,303 - -0.0
199,347 + -0.2
199,347 + +0.7
199,348 - -2.3
199,348 - -0.4
199,348 - -0.5
199,357 + -0.3
199,357 + +1.4
199,357 + -1.3
199,357 + -1.7
199,357 + -0.9
199,357 + -0.6
199,357 + -1.9
199,357 + +0.8
199,357 + -1.3
199,357 + -1.1
199,358 - +0.1
199,358 - -0.0
199,358 - -0.0
199,358 - -0.0
199,358 - -0.5
199,358 - -0.7
199,358 - -0.6
199,358 - -0.3
199,358 - -0.2
199,358 - +0.2
199,358 - -0.3
199,358 - +0.1
199,358 - -0.4
199,358 - -1.7
199,361 + -1.0
199,361 + -0.3
199,361 + +0.3
199,361 + +0.7
199,361 + -0.0
199,370 + -0.3
199,370 + -0.6
199,370 + -1.5
199,404 + -0.7
199,404 + -0.1
199,404 + -0.9
199,405 - -0.3
199,405 - -0.1
199,459 - GFF2153 0.12 -1.3
199,488 + GFF2153 0.17 -0.3
199,488 + GFF2153 0.17 -0.3
199,488 + GFF2153 0.17 +0.5
199,489 - GFF2153 0.17 -1.2
199,489 - GFF2153 0.17 +0.7
199,489 - GFF2153 0.17 +0.5
199,497 + GFF2153 0.18 -0.8
199,497 + GFF2153 0.18 +0.7
199,498 - GFF2153 0.18 -0.5
199,498 - GFF2153 0.18 +0.7
199,498 - GFF2153 0.18 -0.4
199,518 + GFF2153 0.21 -0.7
199,518 + GFF2153 0.21 +0.3
199,518 + GFF2153 0.21 -0.1
199,519 - GFF2153 0.21 -0.3
199,519 - GFF2153 0.21 -0.7
199,561 + GFF2153 0.27 -0.3
199,561 + GFF2153 0.27 +0.1
199,561 + GFF2153 0.27 +0.7
199,562 - GFF2153 0.28 -0.9
199,562 - GFF2153 0.28 +1.5
199,581 + GFF2153 0.30 -0.2
199,581 + GFF2153 0.30 +0.6
199,637 + GFF2153 0.39 -0.4
199,638 - GFF2153 0.39 -0.3
199,650 + GFF2153 0.41 +0.0
199,650 + GFF2153 0.41 -0.8
199,651 - GFF2153 0.41 -0.3
199,651 - GFF2153 0.41 -0.9
199,651 - GFF2153 0.41 -1.5
199,651 - GFF2153 0.41 -1.6
199,699 + GFF2153 0.48 +0.8
199,699 + GFF2153 0.48 +0.2
199,700 - GFF2153 0.48 -0.5
199,700 - GFF2153 0.48 +0.7
199,716 + GFF2153 0.50 +0.3
199,717 - GFF2153 0.51 -0.3
199,717 - GFF2153 0.51 +0.5
199,789 + GFF2153 0.61 -1.7
199,789 + GFF2153 0.61 +1.1
199,789 + GFF2153 0.61 +0.9
199,790 - GFF2153 0.61 -0.3
199,790 - GFF2153 0.61 -0.7
199,790 - GFF2153 0.61 -1.5
199,794 + GFF2153 0.62 -0.7
199,794 + GFF2153 0.62 -0.6
199,794 + GFF2153 0.62 +0.1
199,794 + GFF2153 0.62 -0.8
199,795 - GFF2153 0.62 -0.0
199,795 - GFF2153 0.62 -1.4
199,795 - GFF2153 0.62 -1.0
199,805 + GFF2153 0.64 -1.6
199,806 - GFF2153 0.64 -0.5
199,806 - GFF2153 0.64 -0.6
199,806 - GFF2153 0.64 -0.2
199,829 - GFF2153 0.67 +0.1
199,829 - GFF2153 0.67 -0.5
199,829 - GFF2153 0.67 -1.3
199,829 - GFF2153 0.67 -0.1
199,829 - GFF2153 0.67 -0.6
199,844 + GFF2153 0.69 -0.3
199,844 + GFF2153 0.69 -1.3
199,845 - GFF2153 0.70 -0.7
199,845 - GFF2153 0.70 -0.1
199,902 - GFF2153 0.78 -0.9
199,972 - GFF2153 0.89 -0.7
199,990 - +0.1
200,041 + -2.6
200,042 - -0.3
200,042 - -0.7
200,052 + +0.1
200,052 + +0.0
200,052 + +0.3
200,053 - -0.2
200,053 - +0.4
200,053 - +0.6
200,053 - -0.4
200,065 + +0.3
200,066 - +0.1
200,071 + -1.1
200,071 + -0.0
200,121 + -0.2
200,122 - +0.3

Or see this region's nucleotide sequence