Strain Fitness in Methylophilus sp. DMC18 around GFF2121

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2119 and GFF2120 are separated by 84 nucleotidesGFF2120 and GFF2121 are separated by 265 nucleotidesGFF2121 and GFF2122 are separated by 99 nucleotides GFF2119 - hypothetical protein, at 164,578 to 165,687 GFF2119 GFF2120 - hypothetical protein, at 165,772 to 165,924 GFF2120 GFF2121 - putative hydrolase YcaC, at 166,190 to 166,822 GFF2121 GFF2122 - hypothetical protein, at 166,922 to 167,782 GFF2122 Position (kb) 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1at 165.196 kb on - strand, within GFF2119at 165.196 kb on - strand, within GFF2119at 165.217 kb on + strand, within GFF2119at 165.218 kb on - strand, within GFF2119at 165.218 kb on - strand, within GFF2119at 165.218 kb on - strand, within GFF2119at 165.218 kb on - strand, within GFF2119at 165.235 kb on + strand, within GFF2119at 165.259 kb on + strand, within GFF2119at 165.334 kb on + strand, within GFF2119at 165.334 kb on + strand, within GFF2119at 165.335 kb on - strand, within GFF2119at 165.335 kb on - strand, within GFF2119at 165.335 kb on - strand, within GFF2119at 165.340 kb on + strand, within GFF2119at 165.341 kb on - strand, within GFF2119at 165.341 kb on - strand, within GFF2119at 165.341 kb on - strand, within GFF2119at 165.418 kb on - strand, within GFF2119at 165.418 kb on - strand, within GFF2119at 165.461 kb on + strand, within GFF2119at 165.462 kb on - strand, within GFF2119at 165.483 kb on - strand, within GFF2119at 165.483 kb on - strand, within GFF2119at 165.483 kb on - strand, within GFF2119at 165.483 kb on - strand, within GFF2119at 165.626 kb on - strandat 165.635 kb on + strandat 165.647 kb on + strandat 165.647 kb on + strandat 165.648 kb on - strandat 165.648 kb on - strandat 165.648 kb on - strandat 165.652 kb on + strandat 165.665 kb on - strandat 165.665 kb on - strandat 165.665 kb on - strandat 165.713 kb on + strandat 165.770 kb on + strandat 165.770 kb on + strandat 165.771 kb on - strandat 165.773 kb on + strandat 165.773 kb on + strandat 165.773 kb on + strandat 165.774 kb on - strandat 165.774 kb on - strandat 165.808 kb on - strand, within GFF2120at 165.816 kb on + strand, within GFF2120at 165.816 kb on + strand, within GFF2120at 165.816 kb on + strand, within GFF2120at 165.816 kb on + strand, within GFF2120at 165.816 kb on + strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.817 kb on - strand, within GFF2120at 165.887 kb on + strand, within GFF2120at 165.974 kb on + strandat 166.045 kb on - strandat 166.082 kb on + strandat 166.082 kb on + strandat 166.092 kb on + strandat 166.093 kb on - strandat 166.093 kb on - strandat 166.093 kb on - strandat 166.104 kb on + strandat 166.104 kb on + strandat 166.104 kb on + strandat 166.105 kb on - strandat 166.143 kb on + strandat 166.144 kb on - strandat 166.160 kb on + strandat 166.219 kb on - strandat 166.219 kb on - strandat 166.219 kb on - strandat 166.219 kb on - strandat 166.250 kb on - strandat 166.250 kb on - strandat 166.283 kb on - strand, within GFF2121at 166.341 kb on - strand, within GFF2121at 166.390 kb on + strand, within GFF2121at 166.421 kb on + strand, within GFF2121at 166.421 kb on + strand, within GFF2121at 166.422 kb on - strand, within GFF2121at 166.492 kb on + strand, within GFF2121at 166.492 kb on + strand, within GFF2121at 166.578 kb on + strand, within GFF2121at 166.578 kb on + strand, within GFF2121at 166.579 kb on - strand, within GFF2121at 166.736 kb on + strand, within GFF2121at 166.745 kb on + strand, within GFF2121at 166.749 kb on - strand, within GFF2121at 166.766 kb on + strandat 166.766 kb on + strandat 166.775 kb on + strandat 166.806 kb on + strandat 166.806 kb on + strandat 166.806 kb on + strandat 166.806 kb on + strandat 166.823 kb on - strandat 166.827 kb on + strandat 166.827 kb on + strandat 166.827 kb on + strandat 166.827 kb on + strandat 166.827 kb on + strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.899 kb on + strandat 166.900 kb on - strandat 166.923 kb on + strandat 166.950 kb on + strandat 166.950 kb on + strandat 166.950 kb on + strandat 166.950 kb on + strandat 166.950 kb on + strandat 166.951 kb on - strandat 166.984 kb on + strandat 167.045 kb on + strand, within GFF2122at 167.045 kb on + strand, within GFF2122at 167.046 kb on - strand, within GFF2122at 167.075 kb on + strand, within GFF2122at 167.128 kb on + strand, within GFF2122at 167.129 kb on - strand, within GFF2122at 167.129 kb on - strand, within GFF2122at 167.203 kb on + strand, within GFF2122at 167.204 kb on - strand, within GFF2122at 167.228 kb on + strand, within GFF2122at 167.228 kb on + strand, within GFF2122at 167.229 kb on - strand, within GFF2122at 167.229 kb on - strand, within GFF2122at 167.229 kb on - strand, within GFF2122at 167.284 kb on - strand, within GFF2122at 167.303 kb on + strand, within GFF2122at 167.303 kb on + strand, within GFF2122at 167.303 kb on + strand, within GFF2122at 167.304 kb on - strand, within GFF2122at 167.304 kb on - strand, within GFF2122at 167.304 kb on - strand, within GFF2122at 167.445 kb on + strand, within GFF2122at 167.446 kb on - strand, within GFF2122at 167.446 kb on - strand, within GFF2122at 167.460 kb on + strand, within GFF2122at 167.461 kb on - strand, within GFF2122at 167.474 kb on - strand, within GFF2122at 167.474 kb on - strand, within GFF2122at 167.566 kb on - strand, within GFF2122at 167.620 kb on + strand, within GFF2122at 167.621 kb on - strand, within GFF2122at 167.655 kb on + strand, within GFF2122at 167.656 kb on - strand, within GFF2122at 167.656 kb on - strand, within GFF2122at 167.681 kb on - strand, within GFF2122at 167.701 kb on - strandat 167.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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165,196 - GFF2119 0.56 -0.2
165,196 - GFF2119 0.56 +0.5
165,217 + GFF2119 0.58 -0.1
165,218 - GFF2119 0.58 -1.1
165,218 - GFF2119 0.58 -0.9
165,218 - GFF2119 0.58 -0.5
165,218 - GFF2119 0.58 +0.8
165,235 + GFF2119 0.59 -0.9
165,259 + GFF2119 0.61 -0.0
165,334 + GFF2119 0.68 +1.6
165,334 + GFF2119 0.68 -0.3
165,335 - GFF2119 0.68 -0.5
165,335 - GFF2119 0.68 -0.0
165,335 - GFF2119 0.68 +0.0
165,340 + GFF2119 0.69 +0.7
165,341 - GFF2119 0.69 -0.9
165,341 - GFF2119 0.69 -0.9
165,341 - GFF2119 0.69 -2.3
165,418 - GFF2119 0.76 -0.5
165,418 - GFF2119 0.76 -0.2
165,461 + GFF2119 0.80 +0.9
165,462 - GFF2119 0.80 -0.1
165,483 - GFF2119 0.82 -0.8
165,483 - GFF2119 0.82 -0.4
165,483 - GFF2119 0.82 -2.1
165,483 - GFF2119 0.82 +1.4
165,626 - -1.3
165,635 + +0.1
165,647 + -0.3
165,647 + -1.0
165,648 - -0.8
165,648 - +0.3
165,648 - -0.9
165,652 + -1.7
165,665 - -1.3
165,665 - -0.6
165,665 - +1.3
165,713 + -0.6
165,770 + +0.6
165,770 + +0.1
165,771 - -0.5
165,773 + -0.3
165,773 + +0.1
165,773 + -0.8
165,774 - -0.1
165,774 - +0.6
165,808 - GFF2120 0.24 -0.1
165,816 + GFF2120 0.29 +0.4
165,816 + GFF2120 0.29 -2.3
165,816 + GFF2120 0.29 -0.9
165,816 + GFF2120 0.29 -2.1
165,816 + GFF2120 0.29 +0.7
165,817 - GFF2120 0.29 -0.1
165,817 - GFF2120 0.29 -1.1
165,817 - GFF2120 0.29 +0.5
165,817 - GFF2120 0.29 +0.2
165,817 - GFF2120 0.29 -1.1
165,817 - GFF2120 0.29 -1.3
165,817 - GFF2120 0.29 -0.3
165,817 - GFF2120 0.29 -0.5
165,887 + GFF2120 0.75 -0.7
165,974 + -1.7
166,045 - +0.1
166,082 + +0.5
166,082 + -1.0
166,092 + -0.9
166,093 - +0.1
166,093 - +0.1
166,093 - -0.4
166,104 + +0.4
166,104 + -1.1
166,104 + -0.8
166,105 - +0.1
166,143 + +0.4
166,144 - +0.7
166,160 + -0.5
166,219 - +0.7
166,219 - -1.5
166,219 - -0.2
166,219 - -1.5
166,250 - -0.4
166,250 - -0.2
166,283 - GFF2121 0.15 +0.5
166,341 - GFF2121 0.24 -0.7
166,390 + GFF2121 0.32 +1.1
166,421 + GFF2121 0.36 -0.1
166,421 + GFF2121 0.36 -0.3
166,422 - GFF2121 0.37 -1.0
166,492 + GFF2121 0.48 -2.4
166,492 + GFF2121 0.48 -2.3
166,578 + GFF2121 0.61 -0.1
166,578 + GFF2121 0.61 -0.9
166,579 - GFF2121 0.61 -0.4
166,736 + GFF2121 0.86 +0.1
166,745 + GFF2121 0.88 -0.8
166,749 - GFF2121 0.88 -0.1
166,766 + +0.1
166,766 + -1.9
166,775 + -0.9
166,806 + -0.3
166,806 + -1.3
166,806 + +0.5
166,806 + -0.2
166,823 - -1.5
166,827 + +0.7
166,827 + +0.1
166,827 + +0.4
166,827 + -0.9
166,827 + -0.3
166,828 - +0.7
166,828 - -1.0
166,828 - -1.7
166,899 + -0.5
166,900 - +0.7
166,923 + -0.5
166,950 + -0.3
166,950 + -1.3
166,950 + -1.3
166,950 + -0.9
166,950 + -0.3
166,951 - +0.3
166,984 + -0.5
167,045 + GFF2122 0.14 -0.2
167,045 + GFF2122 0.14 -0.7
167,046 - GFF2122 0.14 -0.5
167,075 + GFF2122 0.18 +0.1
167,128 + GFF2122 0.24 +0.1
167,129 - GFF2122 0.24 -0.4
167,129 - GFF2122 0.24 -0.9
167,203 + GFF2122 0.33 -0.7
167,204 - GFF2122 0.33 +0.1
167,228 + GFF2122 0.36 +0.6
167,228 + GFF2122 0.36 -0.5
167,229 - GFF2122 0.36 +1.3
167,229 - GFF2122 0.36 -0.9
167,229 - GFF2122 0.36 -0.9
167,284 - GFF2122 0.42 -2.4
167,303 + GFF2122 0.44 +0.1
167,303 + GFF2122 0.44 +0.1
167,303 + GFF2122 0.44 -0.3
167,304 - GFF2122 0.44 -0.9
167,304 - GFF2122 0.44 -0.2
167,304 - GFF2122 0.44 +0.7
167,445 + GFF2122 0.61 +0.2
167,446 - GFF2122 0.61 +1.6
167,446 - GFF2122 0.61 +0.1
167,460 + GFF2122 0.62 -0.2
167,461 - GFF2122 0.63 -0.7
167,474 - GFF2122 0.64 -0.1
167,474 - GFF2122 0.64 -1.3
167,566 - GFF2122 0.75 +0.5
167,620 + GFF2122 0.81 +0.3
167,621 - GFF2122 0.81 +0.4
167,655 + GFF2122 0.85 -0.2
167,656 - GFF2122 0.85 +0.2
167,656 - GFF2122 0.85 +1.4
167,681 - GFF2122 0.88 -0.9
167,701 - -0.9
167,753 - -2.9

Or see this region's nucleotide sequence