Experiment: dNMS no carbon
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2053 and GFF2054 are separated by 9 nucleotides GFF2054 and GFF2055 overlap by 4 nucleotides GFF2055 and GFF2056 are separated by 0 nucleotides GFF2056 and GFF2057 are separated by 42 nucleotides
GFF2053 - Peptide chain release factor RF1, at 92,811 to 93,893
GFF2053
GFF2054 - hypothetical protein, at 93,903 to 94,319
GFF2054
GFF2055 - putative protein YhaZ, at 94,316 to 95,185
GFF2055
GFF2056 - Release factor glutamine methyltransferase, at 95,186 to 96,058
GFF2056
GFF2057 - Sugar-phosphatase AraL, at 96,101 to 96,904
GFF2057
Position (kb) 94
95
96 Strain fitness (log2 ratio) -2
-1
0
1 at 93.852 kb on + strand at 93.943 kb on + strand at 93.991 kb on + strand, within GFF2054 at 93.991 kb on + strand, within GFF2054 at 93.992 kb on - strand, within GFF2054 at 93.992 kb on - strand, within GFF2054 at 93.992 kb on - strand, within GFF2054 at 94.097 kb on + strand, within GFF2054 at 94.218 kb on - strand, within GFF2054 at 94.237 kb on + strand, within GFF2054 at 94.237 kb on + strand, within GFF2054 at 94.238 kb on - strand, within GFF2054 at 94.302 kb on + strand at 94.303 kb on - strand at 94.303 kb on - strand at 94.303 kb on - strand at 94.435 kb on + strand, within GFF2055 at 94.435 kb on + strand, within GFF2055 at 94.435 kb on + strand, within GFF2055 at 94.435 kb on + strand, within GFF2055 at 94.447 kb on - strand, within GFF2055 at 94.534 kb on + strand, within GFF2055 at 94.620 kb on + strand, within GFF2055 at 94.620 kb on + strand, within GFF2055 at 94.621 kb on - strand, within GFF2055 at 94.621 kb on - strand, within GFF2055 at 94.621 kb on - strand, within GFF2055 at 94.621 kb on - strand, within GFF2055 at 94.656 kb on - strand, within GFF2055 at 94.660 kb on - strand, within GFF2055 at 94.686 kb on - strand, within GFF2055 at 94.749 kb on - strand, within GFF2055 at 94.872 kb on + strand, within GFF2055 at 94.873 kb on - strand, within GFF2055 at 94.993 kb on - strand, within GFF2055 at 94.993 kb on - strand, within GFF2055 at 95.280 kb on + strand, within GFF2056 at 95.410 kb on + strand, within GFF2056 at 96.042 kb on + strand at 96.042 kb on + strand at 96.055 kb on - strand at 96.085 kb on + strand at 96.085 kb on + strand at 96.085 kb on + strand at 96.085 kb on + strand at 96.090 kb on - strand at 96.090 kb on - strand at 96.090 kb on - strand at 96.090 kb on - strand at 96.110 kb on - strand at 96.118 kb on + strand at 96.118 kb on + strand at 96.119 kb on - strand at 96.121 kb on + strand at 96.121 kb on + strand at 96.122 kb on - strand at 96.132 kb on + strand at 96.132 kb on + strand at 96.133 kb on - strand at 96.155 kb on + strand at 96.155 kb on + strand at 96.155 kb on + strand at 96.155 kb on + strand at 96.155 kb on + strand at 96.156 kb on - strand at 96.156 kb on - strand at 96.156 kb on - strand at 96.156 kb on - strand at 96.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dNMS no carbon remove 93,852 + +0.7 93,943 + -1.9 93,991 + GFF2054 0.21 -0.3 93,991 + GFF2054 0.21 -0.9 93,992 - GFF2054 0.21 -0.5 93,992 - GFF2054 0.21 +0.1 93,992 - GFF2054 0.21 -1.7 94,097 + GFF2054 0.47 -0.9 94,218 - GFF2054 0.76 -0.1 94,237 + GFF2054 0.80 -0.5 94,237 + GFF2054 0.80 -0.7 94,238 - GFF2054 0.80 +0.8 94,302 + +0.4 94,303 - +0.1 94,303 - +0.3 94,303 - +0.1 94,435 + GFF2055 0.14 -1.3 94,435 + GFF2055 0.14 -1.3 94,435 + GFF2055 0.14 -1.5 94,435 + GFF2055 0.14 -1.7 94,447 - GFF2055 0.15 +0.6 94,534 + GFF2055 0.25 +0.3 94,620 + GFF2055 0.35 -2.5 94,620 + GFF2055 0.35 -0.3 94,621 - GFF2055 0.35 -0.6 94,621 - GFF2055 0.35 -1.4 94,621 - GFF2055 0.35 -0.8 94,621 - GFF2055 0.35 -0.9 94,656 - GFF2055 0.39 +0.3 94,660 - GFF2055 0.40 -2.7 94,686 - GFF2055 0.43 -0.9 94,749 - GFF2055 0.50 +0.1 94,872 + GFF2055 0.64 -0.7 94,873 - GFF2055 0.64 -1.5 94,993 - GFF2055 0.78 -0.3 94,993 - GFF2055 0.78 -0.5 95,280 + GFF2056 0.11 -0.9 95,410 + GFF2056 0.26 +0.3 96,042 + -1.5 96,042 + +0.3 96,055 - +0.7 96,085 + -0.8 96,085 + -0.3 96,085 + +0.2 96,085 + -0.3 96,090 - -1.3 96,090 - -0.1 96,090 - -0.1 96,090 - +0.2 96,110 - +1.6 96,118 + -1.5 96,118 + -0.9 96,119 - -0.5 96,121 + -0.5 96,121 + +0.3 96,122 - +0.1 96,132 + +0.1 96,132 + -0.2 96,133 - -0.4 96,155 + -0.2 96,155 + +0.6 96,155 + -1.0 96,155 + +0.2 96,155 + -1.2 96,156 - +0.7 96,156 - -2.3 96,156 - -1.1 96,156 - -0.3 96,156 - -0.7
Or see this region's nucleotide sequence