Strain Fitness in Methylophilus sp. DMC18 around GFF2014

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2013 and GFF2014 are separated by 55 nucleotidesGFF2014 and GFF2015 are separated by 8 nucleotides GFF2013 - hypothetical protein, at 51,631 to 52,599 GFF2013 GFF2014 - Dihydroanticapsin 7-dehydrogenase, at 52,655 to 53,440 GFF2014 GFF2015 - hypothetical protein, at 53,449 to 54,678 GFF2015 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 51.659 kb on + strandat 51.659 kb on + strandat 51.659 kb on + strandat 51.660 kb on - strandat 51.660 kb on - strandat 51.660 kb on - strandat 51.660 kb on - strandat 51.740 kb on + strand, within GFF2013at 51.740 kb on + strand, within GFF2013at 51.740 kb on + strand, within GFF2013at 51.740 kb on + strand, within GFF2013at 51.741 kb on - strand, within GFF2013at 51.741 kb on - strand, within GFF2013at 51.741 kb on - strand, within GFF2013at 51.741 kb on - strand, within GFF2013at 51.830 kb on + strand, within GFF2013at 51.830 kb on + strand, within GFF2013at 51.831 kb on - strand, within GFF2013at 51.831 kb on - strand, within GFF2013at 51.831 kb on - strand, within GFF2013at 51.834 kb on - strand, within GFF2013at 51.864 kb on + strand, within GFF2013at 51.865 kb on - strand, within GFF2013at 51.872 kb on + strand, within GFF2013at 51.872 kb on + strand, within GFF2013at 51.873 kb on - strand, within GFF2013at 51.873 kb on - strand, within GFF2013at 51.873 kb on - strand, within GFF2013at 51.873 kb on - strand, within GFF2013at 51.873 kb on - strand, within GFF2013at 51.873 kb on - strand, within GFF2013at 51.873 kb on - strand, within GFF2013at 51.978 kb on - strand, within GFF2013at 52.019 kb on + strand, within GFF2013at 52.020 kb on - strand, within GFF2013at 52.020 kb on - strand, within GFF2013at 52.088 kb on + strand, within GFF2013at 52.108 kb on - strand, within GFF2013at 52.114 kb on + strand, within GFF2013at 52.114 kb on + strand, within GFF2013at 52.114 kb on + strand, within GFF2013at 52.114 kb on + strand, within GFF2013at 52.115 kb on - strand, within GFF2013at 52.161 kb on + strand, within GFF2013at 52.171 kb on + strand, within GFF2013at 52.172 kb on - strand, within GFF2013at 52.172 kb on - strand, within GFF2013at 52.172 kb on - strand, within GFF2013at 52.190 kb on - strand, within GFF2013at 52.244 kb on + strand, within GFF2013at 52.244 kb on + strand, within GFF2013at 52.245 kb on - strand, within GFF2013at 52.251 kb on + strand, within GFF2013at 52.252 kb on - strand, within GFF2013at 52.252 kb on - strand, within GFF2013at 52.252 kb on - strand, within GFF2013at 52.252 kb on - strand, within GFF2013at 52.320 kb on + strand, within GFF2013at 52.320 kb on + strand, within GFF2013at 52.321 kb on - strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.322 kb on + strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.323 kb on - strand, within GFF2013at 52.327 kb on + strand, within GFF2013at 52.327 kb on + strand, within GFF2013at 52.327 kb on + strand, within GFF2013at 52.328 kb on - strand, within GFF2013at 52.328 kb on - strand, within GFF2013at 52.376 kb on - strand, within GFF2013at 52.376 kb on - strand, within GFF2013at 52.376 kb on - strand, within GFF2013at 52.380 kb on + strand, within GFF2013at 52.381 kb on - strand, within GFF2013at 52.393 kb on - strand, within GFF2013at 52.415 kb on + strand, within GFF2013at 52.415 kb on + strand, within GFF2013at 52.416 kb on - strand, within GFF2013at 52.416 kb on - strand, within GFF2013at 52.416 kb on - strand, within GFF2013at 52.428 kb on - strand, within GFF2013at 52.428 kb on - strand, within GFF2013at 52.428 kb on - strand, within GFF2013at 52.428 kb on - strand, within GFF2013at 52.440 kb on - strand, within GFF2013at 52.440 kb on - strand, within GFF2013at 52.511 kb on + strandat 52.531 kb on + strandat 52.532 kb on - strandat 52.575 kb on + strandat 52.576 kb on - strandat 52.647 kb on + strandat 52.649 kb on + strandat 52.649 kb on + strandat 52.649 kb on + strandat 52.650 kb on - strandat 52.650 kb on - strandat 52.650 kb on - strandat 52.650 kb on - strandat 52.650 kb on - strandat 52.653 kb on + strandat 52.653 kb on + strandat 52.653 kb on + strandat 52.654 kb on - strandat 52.711 kb on - strandat 52.728 kb on + strandat 52.728 kb on + strandat 52.728 kb on + strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.835 kb on + strand, within GFF2014at 52.836 kb on - strand, within GFF2014at 52.836 kb on - strand, within GFF2014at 52.994 kb on + strand, within GFF2014at 52.994 kb on + strand, within GFF2014at 52.995 kb on - strand, within GFF2014at 52.995 kb on - strand, within GFF2014at 53.125 kb on - strand, within GFF2014at 53.172 kb on + strand, within GFF2014at 53.172 kb on + strand, within GFF2014at 53.172 kb on + strand, within GFF2014at 53.172 kb on + strand, within GFF2014at 53.172 kb on + strand, within GFF2014at 53.173 kb on - strand, within GFF2014at 53.173 kb on - strand, within GFF2014at 53.176 kb on + strand, within GFF2014at 53.176 kb on + strand, within GFF2014at 53.176 kb on + strand, within GFF2014at 53.176 kb on + strand, within GFF2014at 53.176 kb on + strand, within GFF2014at 53.176 kb on + strand, within GFF2014at 53.177 kb on - strand, within GFF2014at 53.177 kb on - strand, within GFF2014at 53.177 kb on - strand, within GFF2014at 53.177 kb on - strand, within GFF2014at 53.372 kb on + strandat 53.607 kb on + strand, within GFF2015at 53.607 kb on + strand, within GFF2015at 53.607 kb on + strand, within GFF2015at 53.607 kb on + strand, within GFF2015at 53.607 kb on + strand, within GFF2015at 53.608 kb on - strand, within GFF2015at 53.608 kb on - strand, within GFF2015at 53.608 kb on - strand, within GFF2015at 53.608 kb on - strand, within GFF2015at 53.608 kb on - strand, within GFF2015at 53.608 kb on - strand, within GFF2015at 53.608 kb on - strand, within GFF2015at 53.616 kb on + strand, within GFF2015at 53.814 kb on + strand, within GFF2015at 53.828 kb on + strand, within GFF2015at 53.828 kb on + strand, within GFF2015at 53.828 kb on + strand, within GFF2015at 53.829 kb on - strand, within GFF2015at 53.849 kb on + strand, within GFF2015at 53.850 kb on - strand, within GFF2015at 53.889 kb on - strand, within GFF2015at 53.889 kb on - strand, within GFF2015at 53.889 kb on - strand, within GFF2015at 53.982 kb on - strand, within GFF2015at 54.026 kb on + strand, within GFF2015at 54.026 kb on + strand, within GFF2015at 54.026 kb on + strand, within GFF2015at 54.026 kb on + strand, within GFF2015at 54.026 kb on + strand, within GFF2015at 54.089 kb on - strand, within GFF2015at 54.098 kb on + strand, within GFF2015at 54.098 kb on + strand, within GFF2015at 54.098 kb on + strand, within GFF2015at 54.098 kb on + strand, within GFF2015at 54.099 kb on - strand, within GFF2015at 54.099 kb on - strand, within GFF2015at 54.099 kb on - strand, within GFF2015at 54.099 kb on - strand, within GFF2015at 54.099 kb on - strand, within GFF2015at 54.104 kb on + strand, within GFF2015at 54.104 kb on + strand, within GFF2015at 54.104 kb on + strand, within GFF2015at 54.104 kb on + strand, within GFF2015at 54.104 kb on + strand, within GFF2015at 54.104 kb on + strand, within GFF2015at 54.104 kb on + strand, within GFF2015at 54.105 kb on - strand, within GFF2015at 54.105 kb on - strand, within GFF2015at 54.105 kb on - strand, within GFF2015at 54.105 kb on - strand, within GFF2015at 54.105 kb on - strand, within GFF2015at 54.105 kb on - strand, within GFF2015at 54.105 kb on - strand, within GFF2015at 54.190 kb on - strand, within GFF2015at 54.211 kb on + strand, within GFF2015at 54.211 kb on + strand, within GFF2015at 54.242 kb on - strand, within GFF2015at 54.242 kb on - strand, within GFF2015at 54.242 kb on - strand, within GFF2015at 54.243 kb on + strand, within GFF2015at 54.243 kb on + strand, within GFF2015at 54.243 kb on + strand, within GFF2015at 54.244 kb on - strand, within GFF2015at 54.244 kb on - strand, within GFF2015at 54.244 kb on - strand, within GFF2015at 54.244 kb on - strand, within GFF2015at 54.244 kb on - strand, within GFF2015at 54.247 kb on + strand, within GFF2015at 54.248 kb on - strand, within GFF2015at 54.248 kb on - strand, within GFF2015at 54.254 kb on + strand, within GFF2015at 54.258 kb on - strand, within GFF2015at 54.258 kb on - strand, within GFF2015at 54.375 kb on + strand, within GFF2015at 54.376 kb on - strand, within GFF2015at 54.376 kb on - strand, within GFF2015at 54.428 kb on + strand, within GFF2015

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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51,659 + +0.3
51,659 + -0.9
51,659 + -1.5
51,660 - -0.6
51,660 - +0.1
51,660 - +0.1
51,660 - -0.9
51,740 + GFF2013 0.11 +0.1
51,740 + GFF2013 0.11 -0.8
51,740 + GFF2013 0.11 +1.1
51,740 + GFF2013 0.11 -0.4
51,741 - GFF2013 0.11 -0.1
51,741 - GFF2013 0.11 -0.7
51,741 - GFF2013 0.11 -0.8
51,741 - GFF2013 0.11 -0.1
51,830 + GFF2013 0.21 -0.9
51,830 + GFF2013 0.21 +0.4
51,831 - GFF2013 0.21 -0.2
51,831 - GFF2013 0.21 -0.9
51,831 - GFF2013 0.21 -0.1
51,834 - GFF2013 0.21 -0.9
51,864 + GFF2013 0.24 -0.9
51,865 - GFF2013 0.24 -0.4
51,872 + GFF2013 0.25 -0.7
51,872 + GFF2013 0.25 -0.9
51,873 - GFF2013 0.25 +0.2
51,873 - GFF2013 0.25 -1.5
51,873 - GFF2013 0.25 +0.5
51,873 - GFF2013 0.25 -0.1
51,873 - GFF2013 0.25 -0.4
51,873 - GFF2013 0.25 -0.8
51,873 - GFF2013 0.25 -0.9
51,978 - GFF2013 0.36 -2.4
52,019 + GFF2013 0.40 -1.0
52,020 - GFF2013 0.40 -0.1
52,020 - GFF2013 0.40 -1.3
52,088 + GFF2013 0.47 +0.2
52,108 - GFF2013 0.49 +0.1
52,114 + GFF2013 0.50 -0.5
52,114 + GFF2013 0.50 +1.7
52,114 + GFF2013 0.50 +0.1
52,114 + GFF2013 0.50 -0.9
52,115 - GFF2013 0.50 -2.5
52,161 + GFF2013 0.55 -0.0
52,171 + GFF2013 0.56 -0.7
52,172 - GFF2013 0.56 +0.9
52,172 - GFF2013 0.56 -1.3
52,172 - GFF2013 0.56 -0.4
52,190 - GFF2013 0.58 -1.1
52,244 + GFF2013 0.63 -0.0
52,244 + GFF2013 0.63 -1.9
52,245 - GFF2013 0.63 -0.3
52,251 + GFF2013 0.64 -0.3
52,252 - GFF2013 0.64 -0.7
52,252 - GFF2013 0.64 -0.3
52,252 - GFF2013 0.64 -0.1
52,252 - GFF2013 0.64 +0.7
52,320 + GFF2013 0.71 -0.7
52,320 + GFF2013 0.71 -0.4
52,321 - GFF2013 0.71 +0.1
52,322 + GFF2013 0.71 -0.8
52,322 + GFF2013 0.71 -0.5
52,322 + GFF2013 0.71 -0.3
52,322 + GFF2013 0.71 +0.7
52,322 + GFF2013 0.71 -1.0
52,322 + GFF2013 0.71 -1.6
52,322 + GFF2013 0.71 -0.7
52,322 + GFF2013 0.71 -0.6
52,322 + GFF2013 0.71 +0.1
52,322 + GFF2013 0.71 +0.8
52,322 + GFF2013 0.71 -0.0
52,322 + GFF2013 0.71 +0.9
52,322 + GFF2013 0.71 -0.2
52,322 + GFF2013 0.71 +0.2
52,323 - GFF2013 0.71 +0.1
52,323 - GFF2013 0.71 +0.2
52,323 - GFF2013 0.71 -0.3
52,323 - GFF2013 0.71 +0.1
52,323 - GFF2013 0.71 +0.8
52,323 - GFF2013 0.71 +0.5
52,323 - GFF2013 0.71 -0.7
52,323 - GFF2013 0.71 -0.1
52,323 - GFF2013 0.71 -0.5
52,327 + GFF2013 0.72 -1.1
52,327 + GFF2013 0.72 -0.5
52,327 + GFF2013 0.72 -0.8
52,328 - GFF2013 0.72 +1.1
52,328 - GFF2013 0.72 -0.5
52,376 - GFF2013 0.77 -1.3
52,376 - GFF2013 0.77 -1.7
52,376 - GFF2013 0.77 -1.5
52,380 + GFF2013 0.77 -0.3
52,381 - GFF2013 0.77 +0.1
52,393 - GFF2013 0.79 +0.7
52,415 + GFF2013 0.81 -1.1
52,415 + GFF2013 0.81 -1.9
52,416 - GFF2013 0.81 -0.1
52,416 - GFF2013 0.81 +0.3
52,416 - GFF2013 0.81 +0.0
52,428 - GFF2013 0.82 +0.2
52,428 - GFF2013 0.82 +0.7
52,428 - GFF2013 0.82 -0.9
52,428 - GFF2013 0.82 +0.7
52,440 - GFF2013 0.83 -1.3
52,440 - GFF2013 0.83 +0.3
52,511 + -0.0
52,531 + -2.1
52,532 - +1.1
52,575 + -0.2
52,576 - -0.6
52,647 + +0.9
52,649 + -0.3
52,649 + -0.1
52,649 + -0.8
52,650 - -1.3
52,650 - -0.3
52,650 - +0.1
52,650 - -0.3
52,650 - +0.1
52,653 + +1.3
52,653 + -0.1
52,653 + -0.6
52,654 - -0.4
52,711 - +1.1
52,728 + -0.5
52,728 + -0.0
52,728 + +0.3
52,729 - -0.2
52,729 - +0.1
52,729 - -1.6
52,835 + GFF2014 0.23 +1.1
52,836 - GFF2014 0.23 -0.3
52,836 - GFF2014 0.23 -0.5
52,994 + GFF2014 0.43 +0.1
52,994 + GFF2014 0.43 -1.1
52,995 - GFF2014 0.43 -0.5
52,995 - GFF2014 0.43 -0.8
53,125 - GFF2014 0.60 -0.5
53,172 + GFF2014 0.66 -0.8
53,172 + GFF2014 0.66 +0.1
53,172 + GFF2014 0.66 +0.6
53,172 + GFF2014 0.66 -0.3
53,172 + GFF2014 0.66 -0.0
53,173 - GFF2014 0.66 -2.1
53,173 - GFF2014 0.66 -0.2
53,176 + GFF2014 0.66 -0.7
53,176 + GFF2014 0.66 +0.2
53,176 + GFF2014 0.66 +0.5
53,176 + GFF2014 0.66 -0.9
53,176 + GFF2014 0.66 -0.5
53,176 + GFF2014 0.66 +0.2
53,177 - GFF2014 0.66 -0.4
53,177 - GFF2014 0.66 -0.9
53,177 - GFF2014 0.66 -0.1
53,177 - GFF2014 0.66 -0.1
53,372 + +1.6
53,607 + GFF2015 0.13 +0.1
53,607 + GFF2015 0.13 +0.3
53,607 + GFF2015 0.13 +0.5
53,607 + GFF2015 0.13 -1.6
53,607 + GFF2015 0.13 -0.6
53,608 - GFF2015 0.13 -0.9
53,608 - GFF2015 0.13 +0.7
53,608 - GFF2015 0.13 +0.1
53,608 - GFF2015 0.13 -0.7
53,608 - GFF2015 0.13 -0.4
53,608 - GFF2015 0.13 +0.0
53,608 - GFF2015 0.13 +0.7
53,616 + GFF2015 0.14 +0.7
53,814 + GFF2015 0.30 -1.1
53,828 + GFF2015 0.31 +0.1
53,828 + GFF2015 0.31 +1.1
53,828 + GFF2015 0.31 -1.0
53,829 - GFF2015 0.31 -0.9
53,849 + GFF2015 0.33 -0.5
53,850 - GFF2015 0.33 -0.9
53,889 - GFF2015 0.36 +0.7
53,889 - GFF2015 0.36 +1.1
53,889 - GFF2015 0.36 -0.3
53,982 - GFF2015 0.43 -0.5
54,026 + GFF2015 0.47 -0.2
54,026 + GFF2015 0.47 -0.9
54,026 + GFF2015 0.47 -0.1
54,026 + GFF2015 0.47 -1.0
54,026 + GFF2015 0.47 +0.0
54,089 - GFF2015 0.52 -0.3
54,098 + GFF2015 0.53 +0.1
54,098 + GFF2015 0.53 -1.3
54,098 + GFF2015 0.53 -0.7
54,098 + GFF2015 0.53 -0.4
54,099 - GFF2015 0.53 +0.6
54,099 - GFF2015 0.53 +1.1
54,099 - GFF2015 0.53 +0.7
54,099 - GFF2015 0.53 +1.7
54,099 - GFF2015 0.53 -0.3
54,104 + GFF2015 0.53 -1.8
54,104 + GFF2015 0.53 -1.3
54,104 + GFF2015 0.53 +0.0
54,104 + GFF2015 0.53 -0.2
54,104 + GFF2015 0.53 -0.7
54,104 + GFF2015 0.53 -0.6
54,104 + GFF2015 0.53 +0.5
54,105 - GFF2015 0.53 -0.0
54,105 - GFF2015 0.53 +0.2
54,105 - GFF2015 0.53 -0.1
54,105 - GFF2015 0.53 -0.3
54,105 - GFF2015 0.53 -0.9
54,105 - GFF2015 0.53 -1.3
54,105 - GFF2015 0.53 +0.6
54,190 - GFF2015 0.60 -0.0
54,211 + GFF2015 0.62 -1.7
54,211 + GFF2015 0.62 +0.3
54,242 - GFF2015 0.64 -0.9
54,242 - GFF2015 0.64 -0.7
54,242 - GFF2015 0.64 +0.4
54,243 + GFF2015 0.65 +1.2
54,243 + GFF2015 0.65 -0.9
54,243 + GFF2015 0.65 +0.5
54,244 - GFF2015 0.65 -1.2
54,244 - GFF2015 0.65 -1.0
54,244 - GFF2015 0.65 -0.2
54,244 - GFF2015 0.65 -0.9
54,244 - GFF2015 0.65 +0.3
54,247 + GFF2015 0.65 +0.3
54,248 - GFF2015 0.65 -0.5
54,248 - GFF2015 0.65 +1.4
54,254 + GFF2015 0.65 -1.7
54,258 - GFF2015 0.66 +0.0
54,258 - GFF2015 0.66 -1.3
54,375 + GFF2015 0.75 -1.7
54,376 - GFF2015 0.75 -1.9
54,376 - GFF2015 0.75 -1.4
54,428 + GFF2015 0.80 -1.3

Or see this region's nucleotide sequence