Strain Fitness in Methylophilus sp. DMC18 around GFF1442

Experiment: dNMS no carbon

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	dNMS no carbon
86,988	+				-0.4
86,988	+				-1.6
86,988	+				-1.0
86,989	-				-1.1
86,989	-				-0.9
86,989	-				-0.3
87,011	+				-0.8
87,012	-				+0.3
87,013	+				-0.2
87,013	+				-0.1
87,014	-				+0.8
87,014	-				-0.5
87,077	+		GFF1441	0.11	-1.0
87,078	-		GFF1441	0.11	-0.6
87,078	-		GFF1441	0.11	-0.0
87,119	+		GFF1441	0.15	+0.1
87,119	+		GFF1441	0.15	-0.4
87,119	+		GFF1441	0.15	-0.2
87,120	-		GFF1441	0.16	-1.0
87,120	-		GFF1441	0.16	-0.1
87,137	+		GFF1441	0.17	-1.3
87,138	-		GFF1441	0.17	-0.7
87,229	+		GFF1441	0.27	+0.4
87,229	+		GFF1441	0.27	-1.9
87,316	+		GFF1441	0.35	-1.0
87,316	+		GFF1441	0.35	+1.6
87,316	+		GFF1441	0.35	-1.0
87,316	+		GFF1441	0.35	-1.0
87,317	-		GFF1441	0.35	+0.4
87,317	-		GFF1441	0.35	+0.2
87,317	-		GFF1441	0.35	-1.2
87,320	+		GFF1441	0.36	-1.5
87,320	+		GFF1441	0.36	-3.0
87,320	+		GFF1441	0.36	-2.8
87,320	+		GFF1441	0.36	-1.4
87,320	+		GFF1441	0.36	-0.0
87,320	+		GFF1441	0.36	+0.2
87,321	-		GFF1441	0.36	-0.2
87,321	-		GFF1441	0.36	-0.1
87,321	-		GFF1441	0.36	-0.8
87,341	+		GFF1441	0.38	+0.3
87,341	+		GFF1441	0.38	+0.2
87,341	+		GFF1441	0.38	-0.4
87,341	+		GFF1441	0.38	-0.9
87,342	-		GFF1441	0.38	-0.1
87,342	-		GFF1441	0.38	+0.4
87,342	-		GFF1441	0.38	+0.1
87,342	-		GFF1441	0.38	-2.0
87,342	-		GFF1441	0.38	-0.7
87,342	-		GFF1441	0.38	-1.2
87,342	-		GFF1441	0.38	+0.5
87,342	-		GFF1441	0.38	-0.1
87,342	-		GFF1441	0.38	-1.0
87,343	+		GFF1441	0.38	-0.6
87,344	-		GFF1441	0.38	-0.3
87,555	+		GFF1441	0.59	+0.1
87,555	+		GFF1441	0.59	-0.1
87,555	+		GFF1441	0.59	-0.0
87,555	+		GFF1441	0.59	-0.0
87,556	-		GFF1441	0.60	-0.0
87,556	-		GFF1441	0.60	-0.8
87,595	+		GFF1441	0.64	-0.1
87,595	+		GFF1441	0.64	-0.6
87,596	-		GFF1441	0.64	-1.6
87,655	+		GFF1441	0.70	-1.6
87,656	-		GFF1441	0.70	-0.8
87,663	+		GFF1441	0.70	-0.3
87,663	+		GFF1441	0.70	-0.4
87,664	-		GFF1441	0.71	-2.1
87,664	-		GFF1441	0.71	-1.4
87,664	-		GFF1441	0.71	-0.0
87,664	-		GFF1441	0.71	-0.4
87,683	-		GFF1441	0.72	-0.4
87,722	+		GFF1441	0.76	-1.2
87,723	-		GFF1441	0.76	+0.6
87,723	-		GFF1441	0.76	-0.3
87,724	+		GFF1441	0.77	-0.3
87,724	+		GFF1441	0.77	-0.5
87,725	-		GFF1441	0.77	-0.7
87,725	-		GFF1441	0.77	+0.5
87,767	+		GFF1441	0.81	-0.2
87,767	+		GFF1441	0.81	-0.1
87,767	+		GFF1441	0.81	+0.3
87,767	+		GFF1441	0.81	-1.3
87,768	-		GFF1441	0.81	-0.8
87,768	-		GFF1441	0.81	+1.0
87,768	-		GFF1441	0.81	-1.3
87,768	-		GFF1441	0.81	-0.3
87,768	-		GFF1441	0.81	+1.3
87,768	-		GFF1441	0.81	-1.6
87,803	+		GFF1441	0.85	-0.2
87,803	+		GFF1441	0.85	-1.8
87,804	-		GFF1441	0.85	-0.9
87,804	-		GFF1441	0.85	-0.4
87,804	-		GFF1441	0.85	-1.0
87,895	+				-0.3
87,896	-				-1.6
87,896	-				+0.1
87,953	+				-0.2
87,953	+				+0.1
87,999	-				-0.3
88,069	+		GFF1442	0.12	+0.6
88,069	+		GFF1442	0.12	-0.3
88,186	-		GFF1442	0.23	-1.4
88,332	-		GFF1442	0.38	-1.0
88,332	-		GFF1442	0.38	-0.6
88,477	-		GFF1442	0.52	-1.8
88,584	+		GFF1442	0.63	-0.0
88,622	+		GFF1442	0.66	-1.6
88,622	+		GFF1442	0.66	-0.6
88,623	-		GFF1442	0.67	+0.3
88,720	+		GFF1442	0.76	-1.0
88,721	-		GFF1442	0.76	-0.2
88,721	-		GFF1442	0.76	-0.1
88,757	-		GFF1442	0.80	-0.0
88,835	+		GFF1442	0.88	-0.5
88,835	+		GFF1442	0.88	-0.7
88,835	+		GFF1442	0.88	-0.0
88,836	-		GFF1442	0.88	-1.5
88,922	+				+0.1
88,998	+				-0.3
88,998	+				-0.8
88,998	+				-0.4
88,998	+				-1.0
88,999	-				-2.6
88,999	-				-0.0
88,999	-				-1.6
89,000	+				+0.3
89,006	+				-0.3
89,006	+				-0.1
89,006	+				-0.2
89,006	+				-0.0
89,007	-				+0.1
89,007	-				-0.6
89,007	-				-0.4
89,007	-				-0.3
89,054	+				+0.3
89,098	-				-1.1
89,098	-				-2.5
89,098	-				+0.1
89,098	-				-0.5
89,098	-				-0.2
89,098	-				-0.0
89,140	+				-0.5
89,140	+				-0.6
89,140	+				-0.3
89,141	-				-0.7
89,141	-				-0.7
89,161	+				-0.7
89,162	-				-1.0
89,162	-				-0.4
89,189	-				-0.8
89,189	-				-0.0
89,189	-				-0.4
89,189	-				-0.8
89,209	+				-0.5
89,230	+				-0.8
89,231	-				-0.8
89,231	-				-0.9
89,234	+				-0.3
89,234	+				-1.5
89,235	-				-1.3
89,235	-				+1.3
89,235	-				-0.1
89,235	-				+0.6
89,235	-				-0.1
89,244	+				-0.9
89,244	+				-1.0
89,244	+				-0.7
89,245	-				-2.0
89,245	-				+0.1
89,245	-				-1.1
89,245	-				-0.0
89,250	-				-1.3
89,252	+				-2.2
89,254	+				-1.6
89,254	+				-1.0
89,275	+				-0.8
89,275	+				+0.3
89,276	-				-1.0
89,336	+				-1.3
89,336	+				-0.1
89,339	-				-0.0
89,386	+		GFF1443	0.13	-0.2
89,459	+		GFF1443	0.29	-0.6
89,459	+		GFF1443	0.29	-1.6
89,459	+		GFF1443	0.29	-0.6
89,459	+		GFF1443	0.29	-0.5
89,459	+		GFF1443	0.29	-0.6
89,460	-		GFF1443	0.30	-2.0
89,460	-		GFF1443	0.30	-0.6
89,539	+		GFF1443	0.47	+1.5
89,539	+		GFF1443	0.47	-0.9
89,539	+		GFF1443	0.47	-1.0
89,539	+		GFF1443	0.47	-2.6
89,539	+		GFF1443	0.47	-2.2
89,540	-		GFF1443	0.47	-1.8
89,540	-		GFF1443	0.47	+0.7
89,540	-		GFF1443	0.47	+1.3
89,711	+		GFF1443	0.85	-0.3
89,711	+		GFF1443	0.85	-0.5
89,712	-		GFF1443	0.85	-1.0
89,712	-		GFF1443	0.85	-0.4
89,730	+		GFF1443	0.89	-0.0
89,730	+		GFF1443	0.89	-0.5
89,730	+		GFF1443	0.89	-0.0
89,730	+		GFF1443	0.89	-0.3
89,738	+				+0.6
89,739	-				-1.6
89,806	+				-0.0
89,828	-				+0.5
89,836	+				-0.0
89,837	-				-0.3
89,875	+				+0.2
89,875	+				+1.0
89,896	+				+0.3
89,904	+				-0.3