Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04350

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04350 and OHPLBJKB_04351 are separated by 75 nucleotidesOHPLBJKB_04351 and OHPLBJKB_04352 are separated by 89 nucleotides OHPLBJKB_04350: OHPLBJKB_04350 - RepFIB replication protein A, at 1 to 978 _04350 OHPLBJKB_04351: OHPLBJKB_04351 - hypothetical protein, at 1,054 to 1,173 _04351 OHPLBJKB_04352: OHPLBJKB_04352 - Tyrosine recombinase XerD, at 1,263 to 2,003 _04352 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1 2at 0.006 kb on + strandat 0.102 kb on + strand, within OHPLBJKB_04350at 0.141 kb on + strand, within OHPLBJKB_04350at 0.141 kb on + strand, within OHPLBJKB_04350at 0.142 kb on - strand, within OHPLBJKB_04350at 0.342 kb on - strand, within OHPLBJKB_04350at 0.342 kb on - strand, within OHPLBJKB_04350at 0.455 kb on - strand, within OHPLBJKB_04350at 0.455 kb on - strand, within OHPLBJKB_04350at 0.470 kb on + strand, within OHPLBJKB_04350at 0.485 kb on - strand, within OHPLBJKB_04350at 0.501 kb on + strand, within OHPLBJKB_04350at 0.619 kb on + strand, within OHPLBJKB_04350at 0.620 kb on - strand, within OHPLBJKB_04350at 0.620 kb on - strand, within OHPLBJKB_04350at 0.629 kb on + strand, within OHPLBJKB_04350at 0.629 kb on + strand, within OHPLBJKB_04350at 0.769 kb on + strand, within OHPLBJKB_04350at 0.807 kb on + strand, within OHPLBJKB_04350at 0.982 kb on + strandat 0.983 kb on - strandat 0.983 kb on - strandat 1.012 kb on - strandat 1.025 kb on + strandat 1.025 kb on + strandat 1.026 kb on - strandat 1.026 kb on - strandat 1.026 kb on - strandat 1.027 kb on + strandat 1.028 kb on - strandat 1.031 kb on - strandat 1.065 kb on + strandat 1.065 kb on + strandat 1.121 kb on - strand, within OHPLBJKB_04351at 1.166 kb on + strandat 1.179 kb on - strandat 1.179 kb on - strandat 1.185 kb on + strandat 1.186 kb on - strandat 1.186 kb on - strandat 1.192 kb on + strandat 1.192 kb on + strandat 1.197 kb on - strandat 1.210 kb on + strandat 1.215 kb on + strandat 1.215 kb on + strandat 1.215 kb on + strandat 1.216 kb on - strandat 1.216 kb on - strandat 1.216 kb on - strandat 1.216 kb on - strandat 1.216 kb on - strandat 1.216 kb on - strandat 1.240 kb on + strandat 1.240 kb on + strandat 1.240 kb on + strandat 1.240 kb on + strandat 1.240 kb on + strandat 1.241 kb on - strandat 1.241 kb on - strandat 1.241 kb on - strandat 1.241 kb on - strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.243 kb on - strandat 1.243 kb on - strandat 1.244 kb on + strandat 1.244 kb on + strandat 1.245 kb on - strandat 1.284 kb on - strandat 1.367 kb on + strand, within OHPLBJKB_04352at 1.367 kb on + strand, within OHPLBJKB_04352at 1.369 kb on + strand, within OHPLBJKB_04352at 1.369 kb on + strand, within OHPLBJKB_04352at 1.370 kb on - strand, within OHPLBJKB_04352at 1.439 kb on - strand, within OHPLBJKB_04352at 1.454 kb on + strand, within OHPLBJKB_04352at 1.455 kb on - strand, within OHPLBJKB_04352at 1.455 kb on - strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.456 kb on + strand, within OHPLBJKB_04352at 1.457 kb on - strand, within OHPLBJKB_04352at 1.457 kb on - strand, within OHPLBJKB_04352at 1.457 kb on - strand, within OHPLBJKB_04352at 1.457 kb on - strand, within OHPLBJKB_04352at 1.457 kb on - strand, within OHPLBJKB_04352at 1.500 kb on + strand, within OHPLBJKB_04352at 1.501 kb on - strand, within OHPLBJKB_04352at 1.630 kb on + strand, within OHPLBJKB_04352at 1.630 kb on + strand, within OHPLBJKB_04352at 1.630 kb on + strand, within OHPLBJKB_04352at 1.630 kb on + strand, within OHPLBJKB_04352at 1.630 kb on + strand, within OHPLBJKB_04352at 1.631 kb on - strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.635 kb on + strand, within OHPLBJKB_04352at 1.636 kb on - strand, within OHPLBJKB_04352at 1.636 kb on - strand, within OHPLBJKB_04352at 1.636 kb on - strand, within OHPLBJKB_04352at 1.636 kb on - strand, within OHPLBJKB_04352at 1.636 kb on - strand, within OHPLBJKB_04352at 1.636 kb on - strand, within OHPLBJKB_04352at 1.636 kb on - strand, within OHPLBJKB_04352at 1.638 kb on - strand, within OHPLBJKB_04352at 1.814 kb on + strand, within OHPLBJKB_04352at 1.814 kb on + strand, within OHPLBJKB_04352at 1.815 kb on - strand, within OHPLBJKB_04352at 1.815 kb on - strand, within OHPLBJKB_04352at 1.815 kb on - strand, within OHPLBJKB_04352at 1.815 kb on - strand, within OHPLBJKB_04352at 1.815 kb on - strand, within OHPLBJKB_04352at 1.815 kb on - strand, within OHPLBJKB_04352at 1.837 kb on + strand, within OHPLBJKB_04352at 1.837 kb on + strand, within OHPLBJKB_04352at 1.837 kb on + strand, within OHPLBJKB_04352at 1.837 kb on + strand, within OHPLBJKB_04352at 1.838 kb on - strand, within OHPLBJKB_04352at 1.838 kb on - strand, within OHPLBJKB_04352at 1.838 kb on - strand, within OHPLBJKB_04352at 1.838 kb on - strand, within OHPLBJKB_04352at 1.838 kb on - strand, within OHPLBJKB_04352at 1.838 kb on - strand, within OHPLBJKB_04352at 1.838 kb on - strand, within OHPLBJKB_04352

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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6 + +1.7
102 + OHPLBJKB_04350 0.10 +0.3
141 + OHPLBJKB_04350 0.14 +1.9
141 + OHPLBJKB_04350 0.14 +0.2
142 - OHPLBJKB_04350 0.14 -1.1
342 - OHPLBJKB_04350 0.35 +1.1
342 - OHPLBJKB_04350 0.35 +1.7
455 - OHPLBJKB_04350 0.46 +1.6
455 - OHPLBJKB_04350 0.46 +0.4
470 + OHPLBJKB_04350 0.48 +1.3
485 - OHPLBJKB_04350 0.49 -0.2
501 + OHPLBJKB_04350 0.51 +1.2
619 + OHPLBJKB_04350 0.63 +0.4
620 - OHPLBJKB_04350 0.63 +1.6
620 - OHPLBJKB_04350 0.63 +0.3
629 + OHPLBJKB_04350 0.64 +2.0
629 + OHPLBJKB_04350 0.64 +0.0
769 + OHPLBJKB_04350 0.79 +1.8
807 + OHPLBJKB_04350 0.82 +0.8
982 + -0.9
983 - +0.1
983 - +0.5
1,012 - -0.0
1,025 + +0.4
1,025 + +1.4
1,026 - -0.1
1,026 - -0.2
1,026 - -1.4
1,027 + +0.6
1,028 - +1.9
1,031 - +0.3
1,065 + +2.0
1,065 + +0.3
1,121 - OHPLBJKB_04351 0.56 +1.8
1,166 + +0.1
1,179 - +1.1
1,179 - +1.0
1,185 + +0.2
1,186 - +0.1
1,186 - -0.2
1,192 + -0.5
1,192 + -1.2
1,197 - -0.8
1,210 + +1.9
1,215 + -1.6
1,215 + +0.5
1,215 + -0.2
1,216 - +2.0
1,216 - +1.7
1,216 - +1.1
1,216 - +0.1
1,216 - +0.8
1,216 - +1.4
1,240 + -0.7
1,240 + +0.4
1,240 + -0.2
1,240 + +0.8
1,240 + -0.2
1,241 - +0.6
1,241 - +2.4
1,241 - -1.1
1,241 - -0.2
1,242 + +1.3
1,242 + +0.1
1,242 + -0.7
1,243 - +2.4
1,243 - +0.4
1,244 + +1.4
1,244 + +1.1
1,245 - +1.2
1,284 - -0.1
1,367 + OHPLBJKB_04352 0.14 +0.1
1,367 + OHPLBJKB_04352 0.14 +0.8
1,369 + OHPLBJKB_04352 0.14 -0.3
1,369 + OHPLBJKB_04352 0.14 +0.9
1,370 - OHPLBJKB_04352 0.14 +0.4
1,439 - OHPLBJKB_04352 0.24 +0.4
1,454 + OHPLBJKB_04352 0.26 -0.2
1,455 - OHPLBJKB_04352 0.26 +1.4
1,455 - OHPLBJKB_04352 0.26 +0.5
1,456 + OHPLBJKB_04352 0.26 -0.8
1,456 + OHPLBJKB_04352 0.26 +1.4
1,456 + OHPLBJKB_04352 0.26 -1.3
1,456 + OHPLBJKB_04352 0.26 +2.4
1,456 + OHPLBJKB_04352 0.26 -0.6
1,456 + OHPLBJKB_04352 0.26 -0.6
1,456 + OHPLBJKB_04352 0.26 +1.1
1,456 + OHPLBJKB_04352 0.26 +0.1
1,456 + OHPLBJKB_04352 0.26 -1.2
1,457 - OHPLBJKB_04352 0.26 -0.2
1,457 - OHPLBJKB_04352 0.26 -1.1
1,457 - OHPLBJKB_04352 0.26 +1.2
1,457 - OHPLBJKB_04352 0.26 +0.5
1,457 - OHPLBJKB_04352 0.26 +1.2
1,500 + OHPLBJKB_04352 0.32 +1.2
1,501 - OHPLBJKB_04352 0.32 +0.4
1,630 + OHPLBJKB_04352 0.50 +0.1
1,630 + OHPLBJKB_04352 0.50 +0.9
1,630 + OHPLBJKB_04352 0.50 +0.1
1,630 + OHPLBJKB_04352 0.50 -0.8
1,630 + OHPLBJKB_04352 0.50 -0.6
1,631 - OHPLBJKB_04352 0.50 -0.2
1,635 + OHPLBJKB_04352 0.50 -0.0
1,635 + OHPLBJKB_04352 0.50 +0.2
1,635 + OHPLBJKB_04352 0.50 +0.9
1,635 + OHPLBJKB_04352 0.50 -0.9
1,635 + OHPLBJKB_04352 0.50 +0.6
1,635 + OHPLBJKB_04352 0.50 -0.9
1,635 + OHPLBJKB_04352 0.50 -0.3
1,635 + OHPLBJKB_04352 0.50 +1.1
1,635 + OHPLBJKB_04352 0.50 -1.2
1,635 + OHPLBJKB_04352 0.50 +0.2
1,635 + OHPLBJKB_04352 0.50 +0.2
1,635 + OHPLBJKB_04352 0.50 +0.5
1,635 + OHPLBJKB_04352 0.50 -0.4
1,635 + OHPLBJKB_04352 0.50 +0.3
1,636 - OHPLBJKB_04352 0.50 +0.1
1,636 - OHPLBJKB_04352 0.50 +0.3
1,636 - OHPLBJKB_04352 0.50 -0.3
1,636 - OHPLBJKB_04352 0.50 +0.7
1,636 - OHPLBJKB_04352 0.50 +0.2
1,636 - OHPLBJKB_04352 0.50 -0.2
1,636 - OHPLBJKB_04352 0.50 +0.4
1,638 - OHPLBJKB_04352 0.51 +0.2
1,814 + OHPLBJKB_04352 0.74 +1.4
1,814 + OHPLBJKB_04352 0.74 +1.2
1,815 - OHPLBJKB_04352 0.74 +1.0
1,815 - OHPLBJKB_04352 0.74 -0.6
1,815 - OHPLBJKB_04352 0.74 +0.5
1,815 - OHPLBJKB_04352 0.74 +0.5
1,815 - OHPLBJKB_04352 0.74 +0.2
1,815 - OHPLBJKB_04352 0.74 -0.9
1,837 + OHPLBJKB_04352 0.77 -1.3
1,837 + OHPLBJKB_04352 0.77 +1.6
1,837 + OHPLBJKB_04352 0.77 +1.1
1,837 + OHPLBJKB_04352 0.77 -1.5
1,838 - OHPLBJKB_04352 0.78 +0.6
1,838 - OHPLBJKB_04352 0.78 -0.4
1,838 - OHPLBJKB_04352 0.78 +0.3
1,838 - OHPLBJKB_04352 0.78 -0.6
1,838 - OHPLBJKB_04352 0.78 -0.2
1,838 - OHPLBJKB_04352 0.78 +0.1
1,838 - OHPLBJKB_04352 0.78 +0.7

Or see this region's nucleotide sequence