Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04292 and OHPLBJKB_04293 are separated by 195 nucleotides OHPLBJKB_04293 and OHPLBJKB_04294 are separated by 86 nucleotides OHPLBJKB_04294 and OHPLBJKB_04295 are separated by 483 nucleotides
OHPLBJKB_04292: OHPLBJKB_04292 - 23S ribosomal RNA, at 4,510,982 to 4,513,882
_04292
OHPLBJKB_04293: OHPLBJKB_04293 - tRNA-Glu, at 4,514,078 to 4,514,153
_04293
OHPLBJKB_04294: OHPLBJKB_04294 - 16S ribosomal RNA, at 4,514,240 to 4,515,777
_04294
OHPLBJKB_04295: OHPLBJKB_04295 - HTH-type transcriptional repressor NanR, at 4,516,261 to 4,516,953
_04295
Position (kb)
4514
4515
4516 Strain fitness (log2 ratio)
-1
0
1 at 4516.203 kb on + strand at 4516.224 kb on + strand at 4516.224 kb on + strand at 4516.225 kb on - strand at 4516.225 kb on - strand at 4516.227 kb on + strand at 4516.227 kb on + strand at 4516.228 kb on - strand at 4516.228 kb on - strand at 4516.237 kb on + strand at 4516.256 kb on + strand at 4516.257 kb on - strand at 4516.257 kb on - strand at 4516.257 kb on - strand at 4516.260 kb on - strand at 4516.284 kb on - strand at 4516.284 kb on - strand at 4516.306 kb on + strand at 4516.307 kb on - strand at 4516.307 kb on - strand at 4516.341 kb on - strand, within OHPLBJKB_04295 at 4516.351 kb on + strand, within OHPLBJKB_04295 at 4516.413 kb on + strand, within OHPLBJKB_04295 at 4516.464 kb on - strand, within OHPLBJKB_04295 at 4516.533 kb on + strand, within OHPLBJKB_04295 at 4516.534 kb on - strand, within OHPLBJKB_04295 at 4516.593 kb on + strand, within OHPLBJKB_04295 at 4516.593 kb on + strand, within OHPLBJKB_04295 at 4516.593 kb on + strand, within OHPLBJKB_04295 at 4516.593 kb on + strand, within OHPLBJKB_04295 at 4516.593 kb on + strand, within OHPLBJKB_04295 at 4516.665 kb on + strand, within OHPLBJKB_04295 at 4516.666 kb on - strand, within OHPLBJKB_04295 at 4516.727 kb on + strand, within OHPLBJKB_04295 at 4516.727 kb on + strand, within OHPLBJKB_04295 at 4516.728 kb on - strand, within OHPLBJKB_04295 at 4516.728 kb on - strand, within OHPLBJKB_04295 at 4516.728 kb on - strand, within OHPLBJKB_04295 at 4516.728 kb on - strand, within OHPLBJKB_04295 at 4516.728 kb on - strand, within OHPLBJKB_04295 at 4516.728 kb on - strand, within OHPLBJKB_04295 at 4516.731 kb on + strand, within OHPLBJKB_04295 at 4516.731 kb on + strand, within OHPLBJKB_04295 at 4516.749 kb on + strand, within OHPLBJKB_04295 at 4516.749 kb on + strand, within OHPLBJKB_04295 at 4516.749 kb on + strand, within OHPLBJKB_04295 at 4516.749 kb on + strand, within OHPLBJKB_04295 at 4516.749 kb on + strand, within OHPLBJKB_04295 at 4516.750 kb on - strand, within OHPLBJKB_04295 at 4516.750 kb on - strand, within OHPLBJKB_04295 at 4516.750 kb on - strand, within OHPLBJKB_04295 at 4516.750 kb on - strand, within OHPLBJKB_04295 at 4516.750 kb on - strand, within OHPLBJKB_04295 at 4516.750 kb on - strand, within OHPLBJKB_04295 at 4516.750 kb on - strand, within OHPLBJKB_04295 at 4516.753 kb on + strand, within OHPLBJKB_04295 at 4516.753 kb on + strand, within OHPLBJKB_04295 at 4516.754 kb on - strand, within OHPLBJKB_04295
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 4,516,203 + -1.0 4,516,224 + +0.1 4,516,224 + +0.8 4,516,225 - +0.0 4,516,225 - +0.6 4,516,227 + -0.2 4,516,227 + -0.6 4,516,228 - -0.0 4,516,228 - +1.0 4,516,237 + -0.4 4,516,256 + -0.1 4,516,257 - +0.4 4,516,257 - +0.8 4,516,257 - +0.6 4,516,260 - +1.3 4,516,284 - +0.1 4,516,284 - -0.7 4,516,306 + -0.5 4,516,307 - -0.5 4,516,307 - +0.7 4,516,341 - OHPLBJKB_04295 0.12 +0.5 4,516,351 + OHPLBJKB_04295 0.13 -0.5 4,516,413 + OHPLBJKB_04295 0.22 +0.5 4,516,464 - OHPLBJKB_04295 0.29 +0.5 4,516,533 + OHPLBJKB_04295 0.39 +0.3 4,516,534 - OHPLBJKB_04295 0.39 +0.4 4,516,593 + OHPLBJKB_04295 0.48 -0.6 4,516,593 + OHPLBJKB_04295 0.48 +0.3 4,516,593 + OHPLBJKB_04295 0.48 -1.6 4,516,593 + OHPLBJKB_04295 0.48 -0.0 4,516,593 + OHPLBJKB_04295 0.48 +0.5 4,516,665 + OHPLBJKB_04295 0.58 -0.4 4,516,666 - OHPLBJKB_04295 0.58 +0.1 4,516,727 + OHPLBJKB_04295 0.67 +0.2 4,516,727 + OHPLBJKB_04295 0.67 +0.6 4,516,728 - OHPLBJKB_04295 0.67 +0.3 4,516,728 - OHPLBJKB_04295 0.67 +0.4 4,516,728 - OHPLBJKB_04295 0.67 -0.2 4,516,728 - OHPLBJKB_04295 0.67 +1.1 4,516,728 - OHPLBJKB_04295 0.67 -0.1 4,516,728 - OHPLBJKB_04295 0.67 +1.0 4,516,731 + OHPLBJKB_04295 0.68 +0.3 4,516,731 + OHPLBJKB_04295 0.68 -1.3 4,516,749 + OHPLBJKB_04295 0.70 +0.6 4,516,749 + OHPLBJKB_04295 0.70 +0.1 4,516,749 + OHPLBJKB_04295 0.70 +0.5 4,516,749 + OHPLBJKB_04295 0.70 -0.2 4,516,749 + OHPLBJKB_04295 0.70 +0.7 4,516,750 - OHPLBJKB_04295 0.71 +1.0 4,516,750 - OHPLBJKB_04295 0.71 +1.1 4,516,750 - OHPLBJKB_04295 0.71 +0.9 4,516,750 - OHPLBJKB_04295 0.71 +0.3 4,516,750 - OHPLBJKB_04295 0.71 -0.2 4,516,750 - OHPLBJKB_04295 0.71 +0.4 4,516,750 - OHPLBJKB_04295 0.71 -0.0 4,516,753 + OHPLBJKB_04295 0.71 +0.9 4,516,753 + OHPLBJKB_04295 0.71 +0.8 4,516,754 - OHPLBJKB_04295 0.71 -0.7
Or see this region's nucleotide sequence