Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04294

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04292 and OHPLBJKB_04293 are separated by 195 nucleotidesOHPLBJKB_04293 and OHPLBJKB_04294 are separated by 86 nucleotidesOHPLBJKB_04294 and OHPLBJKB_04295 are separated by 483 nucleotides OHPLBJKB_04292: OHPLBJKB_04292 - 23S ribosomal RNA, at 4,510,982 to 4,513,882 _04292 OHPLBJKB_04293: OHPLBJKB_04293 - tRNA-Glu, at 4,514,078 to 4,514,153 _04293 OHPLBJKB_04294: OHPLBJKB_04294 - 16S ribosomal RNA, at 4,514,240 to 4,515,777 _04294 OHPLBJKB_04295: OHPLBJKB_04295 - HTH-type transcriptional repressor NanR, at 4,516,261 to 4,516,953 _04295 Position (kb) 4514 4515 4516Strain fitness (log2 ratio) -1 0 1at 4516.203 kb on + strandat 4516.224 kb on + strandat 4516.224 kb on + strandat 4516.225 kb on - strandat 4516.225 kb on - strandat 4516.227 kb on + strandat 4516.227 kb on + strandat 4516.228 kb on - strandat 4516.228 kb on - strandat 4516.237 kb on + strandat 4516.256 kb on + strandat 4516.257 kb on - strandat 4516.257 kb on - strandat 4516.257 kb on - strandat 4516.260 kb on - strandat 4516.284 kb on - strandat 4516.284 kb on - strandat 4516.306 kb on + strandat 4516.307 kb on - strandat 4516.307 kb on - strandat 4516.341 kb on - strand, within OHPLBJKB_04295at 4516.351 kb on + strand, within OHPLBJKB_04295at 4516.413 kb on + strand, within OHPLBJKB_04295at 4516.464 kb on - strand, within OHPLBJKB_04295at 4516.533 kb on + strand, within OHPLBJKB_04295at 4516.534 kb on - strand, within OHPLBJKB_04295at 4516.593 kb on + strand, within OHPLBJKB_04295at 4516.593 kb on + strand, within OHPLBJKB_04295at 4516.593 kb on + strand, within OHPLBJKB_04295at 4516.593 kb on + strand, within OHPLBJKB_04295at 4516.593 kb on + strand, within OHPLBJKB_04295at 4516.665 kb on + strand, within OHPLBJKB_04295at 4516.666 kb on - strand, within OHPLBJKB_04295at 4516.727 kb on + strand, within OHPLBJKB_04295at 4516.727 kb on + strand, within OHPLBJKB_04295at 4516.728 kb on - strand, within OHPLBJKB_04295at 4516.728 kb on - strand, within OHPLBJKB_04295at 4516.728 kb on - strand, within OHPLBJKB_04295at 4516.728 kb on - strand, within OHPLBJKB_04295at 4516.728 kb on - strand, within OHPLBJKB_04295at 4516.728 kb on - strand, within OHPLBJKB_04295at 4516.731 kb on + strand, within OHPLBJKB_04295at 4516.731 kb on + strand, within OHPLBJKB_04295at 4516.749 kb on + strand, within OHPLBJKB_04295at 4516.749 kb on + strand, within OHPLBJKB_04295at 4516.749 kb on + strand, within OHPLBJKB_04295at 4516.749 kb on + strand, within OHPLBJKB_04295at 4516.749 kb on + strand, within OHPLBJKB_04295at 4516.750 kb on - strand, within OHPLBJKB_04295at 4516.750 kb on - strand, within OHPLBJKB_04295at 4516.750 kb on - strand, within OHPLBJKB_04295at 4516.750 kb on - strand, within OHPLBJKB_04295at 4516.750 kb on - strand, within OHPLBJKB_04295at 4516.750 kb on - strand, within OHPLBJKB_04295at 4516.750 kb on - strand, within OHPLBJKB_04295at 4516.753 kb on + strand, within OHPLBJKB_04295at 4516.753 kb on + strand, within OHPLBJKB_04295at 4516.754 kb on - strand, within OHPLBJKB_04295

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,516,203 + -1.0
4,516,224 + +0.1
4,516,224 + +0.8
4,516,225 - +0.0
4,516,225 - +0.6
4,516,227 + -0.2
4,516,227 + -0.6
4,516,228 - -0.0
4,516,228 - +1.0
4,516,237 + -0.4
4,516,256 + -0.1
4,516,257 - +0.4
4,516,257 - +0.8
4,516,257 - +0.6
4,516,260 - +1.3
4,516,284 - +0.1
4,516,284 - -0.7
4,516,306 + -0.5
4,516,307 - -0.5
4,516,307 - +0.7
4,516,341 - OHPLBJKB_04295 0.12 +0.5
4,516,351 + OHPLBJKB_04295 0.13 -0.5
4,516,413 + OHPLBJKB_04295 0.22 +0.5
4,516,464 - OHPLBJKB_04295 0.29 +0.5
4,516,533 + OHPLBJKB_04295 0.39 +0.3
4,516,534 - OHPLBJKB_04295 0.39 +0.4
4,516,593 + OHPLBJKB_04295 0.48 -0.6
4,516,593 + OHPLBJKB_04295 0.48 +0.3
4,516,593 + OHPLBJKB_04295 0.48 -1.6
4,516,593 + OHPLBJKB_04295 0.48 -0.0
4,516,593 + OHPLBJKB_04295 0.48 +0.5
4,516,665 + OHPLBJKB_04295 0.58 -0.4
4,516,666 - OHPLBJKB_04295 0.58 +0.1
4,516,727 + OHPLBJKB_04295 0.67 +0.2
4,516,727 + OHPLBJKB_04295 0.67 +0.6
4,516,728 - OHPLBJKB_04295 0.67 +0.3
4,516,728 - OHPLBJKB_04295 0.67 +0.4
4,516,728 - OHPLBJKB_04295 0.67 -0.2
4,516,728 - OHPLBJKB_04295 0.67 +1.1
4,516,728 - OHPLBJKB_04295 0.67 -0.1
4,516,728 - OHPLBJKB_04295 0.67 +1.0
4,516,731 + OHPLBJKB_04295 0.68 +0.3
4,516,731 + OHPLBJKB_04295 0.68 -1.3
4,516,749 + OHPLBJKB_04295 0.70 +0.6
4,516,749 + OHPLBJKB_04295 0.70 +0.1
4,516,749 + OHPLBJKB_04295 0.70 +0.5
4,516,749 + OHPLBJKB_04295 0.70 -0.2
4,516,749 + OHPLBJKB_04295 0.70 +0.7
4,516,750 - OHPLBJKB_04295 0.71 +1.0
4,516,750 - OHPLBJKB_04295 0.71 +1.1
4,516,750 - OHPLBJKB_04295 0.71 +0.9
4,516,750 - OHPLBJKB_04295 0.71 +0.3
4,516,750 - OHPLBJKB_04295 0.71 -0.2
4,516,750 - OHPLBJKB_04295 0.71 +0.4
4,516,750 - OHPLBJKB_04295 0.71 -0.0
4,516,753 + OHPLBJKB_04295 0.71 +0.9
4,516,753 + OHPLBJKB_04295 0.71 +0.8
4,516,754 - OHPLBJKB_04295 0.71 -0.7

Or see this region's nucleotide sequence