Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04211

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04210 and OHPLBJKB_04211 are separated by 166 nucleotidesOHPLBJKB_04211 and OHPLBJKB_04212 overlap by 4 nucleotidesOHPLBJKB_04212 and OHPLBJKB_04213 are separated by 41 nucleotides OHPLBJKB_04210: OHPLBJKB_04210 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,429,160 to 4,430,653 _04210 OHPLBJKB_04211: OHPLBJKB_04211 - Transcription antitermination protein RfaH, at 4,430,820 to 4,431,308 _04211 OHPLBJKB_04212: OHPLBJKB_04212 - '3'-5' ssDNA/RNA exonuclease TatD' transl_table=11, at 4,431,305 to 4,432,087 _04212 OHPLBJKB_04213: OHPLBJKB_04213 - Sec-independent protein translocase protein TatC, at 4,432,129 to 4,432,905 _04213 Position (kb) 4430 4431 4432Strain fitness (log2 ratio) -1 0 1at 4430.657 kb on - strandat 4430.664 kb on + strandat 4430.664 kb on + strandat 4430.669 kb on + strandat 4430.670 kb on - strandat 4430.670 kb on - strandat 4430.678 kb on + strandat 4430.678 kb on + strandat 4430.679 kb on - strandat 4430.681 kb on - strandat 4430.758 kb on + strandat 4430.758 kb on + strandat 4430.758 kb on + strandat 4430.758 kb on + strandat 4430.758 kb on + strandat 4430.758 kb on + strandat 4430.758 kb on + strandat 4430.759 kb on - strandat 4430.759 kb on - strandat 4430.759 kb on - strandat 4430.759 kb on - strandat 4430.759 kb on - strandat 4430.759 kb on - strandat 4430.762 kb on + strandat 4430.762 kb on + strandat 4430.762 kb on + strandat 4430.763 kb on - strandat 4430.772 kb on + strandat 4430.819 kb on + strandat 4430.819 kb on + strandat 4430.820 kb on - strandat 4431.248 kb on + strand, within OHPLBJKB_04211at 4431.249 kb on - strand, within OHPLBJKB_04211at 4431.249 kb on - strand, within OHPLBJKB_04211at 4431.254 kb on + strand, within OHPLBJKB_04211at 4431.255 kb on - strand, within OHPLBJKB_04211at 4431.261 kb on - strandat 4431.261 kb on - strandat 4431.261 kb on - strandat 4431.269 kb on + strandat 4431.306 kb on + strandat 4431.307 kb on - strandat 4431.307 kb on - strandat 4431.338 kb on - strandat 4431.338 kb on - strandat 4431.391 kb on + strand, within OHPLBJKB_04212at 4431.391 kb on + strand, within OHPLBJKB_04212at 4431.391 kb on + strand, within OHPLBJKB_04212at 4431.392 kb on - strand, within OHPLBJKB_04212at 4431.392 kb on - strand, within OHPLBJKB_04212at 4431.392 kb on - strand, within OHPLBJKB_04212at 4431.392 kb on - strand, within OHPLBJKB_04212at 4431.403 kb on + strand, within OHPLBJKB_04212at 4431.404 kb on - strand, within OHPLBJKB_04212at 4431.494 kb on + strand, within OHPLBJKB_04212at 4431.579 kb on + strand, within OHPLBJKB_04212at 4431.682 kb on + strand, within OHPLBJKB_04212at 4431.682 kb on + strand, within OHPLBJKB_04212at 4431.712 kb on + strand, within OHPLBJKB_04212at 4431.712 kb on + strand, within OHPLBJKB_04212at 4431.712 kb on + strand, within OHPLBJKB_04212at 4431.713 kb on - strand, within OHPLBJKB_04212at 4431.713 kb on - strand, within OHPLBJKB_04212at 4431.713 kb on - strand, within OHPLBJKB_04212at 4431.729 kb on - strand, within OHPLBJKB_04212at 4431.746 kb on + strand, within OHPLBJKB_04212at 4431.746 kb on + strand, within OHPLBJKB_04212at 4431.746 kb on + strand, within OHPLBJKB_04212at 4431.746 kb on + strand, within OHPLBJKB_04212at 4431.905 kb on + strand, within OHPLBJKB_04212at 4431.906 kb on - strand, within OHPLBJKB_04212at 4431.906 kb on - strand, within OHPLBJKB_04212at 4431.906 kb on - strand, within OHPLBJKB_04212at 4431.906 kb on - strand, within OHPLBJKB_04212at 4431.933 kb on + strand, within OHPLBJKB_04212at 4431.992 kb on + strand, within OHPLBJKB_04212at 4432.000 kb on + strand, within OHPLBJKB_04212at 4432.000 kb on + strand, within OHPLBJKB_04212at 4432.000 kb on + strand, within OHPLBJKB_04212at 4432.001 kb on - strand, within OHPLBJKB_04212at 4432.025 kb on + strandat 4432.025 kb on + strandat 4432.025 kb on + strandat 4432.026 kb on - strandat 4432.026 kb on - strandat 4432.026 kb on - strandat 4432.092 kb on + strandat 4432.093 kb on - strandat 4432.099 kb on + strandat 4432.099 kb on + strandat 4432.099 kb on + strandat 4432.099 kb on + strandat 4432.099 kb on + strandat 4432.100 kb on - strandat 4432.192 kb on - strandat 4432.199 kb on + strandat 4432.199 kb on + strandat 4432.200 kb on - strandat 4432.200 kb on - strandat 4432.238 kb on + strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213at 4432.239 kb on - strand, within OHPLBJKB_04213

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,430,657 - +1.5
4,430,664 + +0.3
4,430,664 + +0.0
4,430,669 + -1.2
4,430,670 - +0.8
4,430,670 - +0.5
4,430,678 + -0.9
4,430,678 + +0.5
4,430,679 - -0.5
4,430,681 - +0.1
4,430,758 + -1.0
4,430,758 + +1.1
4,430,758 + +1.2
4,430,758 + -0.5
4,430,758 + -0.8
4,430,758 + +0.1
4,430,758 + -0.3
4,430,759 - -0.5
4,430,759 - +0.1
4,430,759 - -0.3
4,430,759 - -0.4
4,430,759 - +0.1
4,430,759 - -0.4
4,430,762 + -0.2
4,430,762 + +0.2
4,430,762 + +0.1
4,430,763 - -0.6
4,430,772 + -0.7
4,430,819 + +0.4
4,430,819 + +1.2
4,430,820 - +1.1
4,431,248 + OHPLBJKB_04211 0.88 -0.4
4,431,249 - OHPLBJKB_04211 0.88 +1.1
4,431,249 - OHPLBJKB_04211 0.88 +0.7
4,431,254 + OHPLBJKB_04211 0.89 +0.6
4,431,255 - OHPLBJKB_04211 0.89 -0.5
4,431,261 - +0.2
4,431,261 - -0.4
4,431,261 - -1.5
4,431,269 + -0.4
4,431,306 + +0.1
4,431,307 - +0.4
4,431,307 - +0.1
4,431,338 - +1.0
4,431,338 - +0.5
4,431,391 + OHPLBJKB_04212 0.11 -0.4
4,431,391 + OHPLBJKB_04212 0.11 +0.9
4,431,391 + OHPLBJKB_04212 0.11 -0.8
4,431,392 - OHPLBJKB_04212 0.11 +0.2
4,431,392 - OHPLBJKB_04212 0.11 -1.5
4,431,392 - OHPLBJKB_04212 0.11 +0.2
4,431,392 - OHPLBJKB_04212 0.11 -0.1
4,431,403 + OHPLBJKB_04212 0.13 +0.2
4,431,404 - OHPLBJKB_04212 0.13 +0.3
4,431,494 + OHPLBJKB_04212 0.24 +0.3
4,431,579 + OHPLBJKB_04212 0.35 -0.7
4,431,682 + OHPLBJKB_04212 0.48 -0.5
4,431,682 + OHPLBJKB_04212 0.48 +0.1
4,431,712 + OHPLBJKB_04212 0.52 -0.1
4,431,712 + OHPLBJKB_04212 0.52 -0.0
4,431,712 + OHPLBJKB_04212 0.52 -1.3
4,431,713 - OHPLBJKB_04212 0.52 +0.0
4,431,713 - OHPLBJKB_04212 0.52 +0.9
4,431,713 - OHPLBJKB_04212 0.52 -0.4
4,431,729 - OHPLBJKB_04212 0.54 +0.1
4,431,746 + OHPLBJKB_04212 0.56 +0.4
4,431,746 + OHPLBJKB_04212 0.56 -1.0
4,431,746 + OHPLBJKB_04212 0.56 -0.3
4,431,746 + OHPLBJKB_04212 0.56 +0.3
4,431,905 + OHPLBJKB_04212 0.77 -0.7
4,431,906 - OHPLBJKB_04212 0.77 +0.5
4,431,906 - OHPLBJKB_04212 0.77 -0.2
4,431,906 - OHPLBJKB_04212 0.77 +0.4
4,431,906 - OHPLBJKB_04212 0.77 +0.9
4,431,933 + OHPLBJKB_04212 0.80 -1.1
4,431,992 + OHPLBJKB_04212 0.88 -0.2
4,432,000 + OHPLBJKB_04212 0.89 -0.2
4,432,000 + OHPLBJKB_04212 0.89 -0.3
4,432,000 + OHPLBJKB_04212 0.89 -0.6
4,432,001 - OHPLBJKB_04212 0.89 -0.4
4,432,025 + +0.8
4,432,025 + +0.4
4,432,025 + +0.4
4,432,026 - +0.1
4,432,026 - +0.2
4,432,026 - -0.3
4,432,092 + +0.1
4,432,093 - +0.1
4,432,099 + -0.1
4,432,099 + -0.1
4,432,099 + +0.3
4,432,099 + -0.0
4,432,099 + +0.6
4,432,100 - -0.2
4,432,192 - -0.2
4,432,199 + -0.5
4,432,199 + +0.2
4,432,200 - +0.5
4,432,200 - +0.1
4,432,238 + OHPLBJKB_04213 0.14 +0.1
4,432,239 - OHPLBJKB_04213 0.14 +1.7
4,432,239 - OHPLBJKB_04213 0.14 -1.0
4,432,239 - OHPLBJKB_04213 0.14 -0.0
4,432,239 - OHPLBJKB_04213 0.14 -1.0
4,432,239 - OHPLBJKB_04213 0.14 -0.7
4,432,239 - OHPLBJKB_04213 0.14 -1.2
4,432,239 - OHPLBJKB_04213 0.14 +0.5
4,432,239 - OHPLBJKB_04213 0.14 -0.0

Or see this region's nucleotide sequence