Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02775

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02774 and OHPLBJKB_02775 are separated by 238 nucleotidesOHPLBJKB_02775 and OHPLBJKB_02776 are separated by 90 nucleotides OHPLBJKB_02774: OHPLBJKB_02774 - Dimethyl sulfoxide reductase DmsA, at 2,898,892 to 2,901,336 _02774 OHPLBJKB_02775: OHPLBJKB_02775 - Serine--tRNA ligase, at 2,901,575 to 2,902,867 _02775 OHPLBJKB_02776: OHPLBJKB_02776 - Replication-associated recombination protein A, at 2,902,958 to 2,904,301 _02776 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2900.576 kb on + strand, within OHPLBJKB_02774at 2900.576 kb on + strand, within OHPLBJKB_02774at 2900.576 kb on + strand, within OHPLBJKB_02774at 2900.577 kb on - strand, within OHPLBJKB_02774at 2900.577 kb on - strand, within OHPLBJKB_02774at 2900.620 kb on - strand, within OHPLBJKB_02774at 2900.691 kb on + strand, within OHPLBJKB_02774at 2900.692 kb on - strand, within OHPLBJKB_02774at 2900.692 kb on - strand, within OHPLBJKB_02774at 2900.692 kb on - strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.694 kb on - strand, within OHPLBJKB_02774at 2900.694 kb on - strand, within OHPLBJKB_02774at 2900.727 kb on - strand, within OHPLBJKB_02774at 2900.784 kb on + strand, within OHPLBJKB_02774at 2900.784 kb on + strand, within OHPLBJKB_02774at 2900.785 kb on - strand, within OHPLBJKB_02774at 2900.837 kb on + strand, within OHPLBJKB_02774at 2900.838 kb on - strand, within OHPLBJKB_02774at 2900.846 kb on + strand, within OHPLBJKB_02774at 2900.847 kb on - strand, within OHPLBJKB_02774at 2900.851 kb on - strand, within OHPLBJKB_02774at 2900.851 kb on - strand, within OHPLBJKB_02774at 2900.851 kb on - strand, within OHPLBJKB_02774at 2900.886 kb on + strand, within OHPLBJKB_02774at 2900.907 kb on - strand, within OHPLBJKB_02774at 2900.922 kb on + strand, within OHPLBJKB_02774at 2900.922 kb on + strand, within OHPLBJKB_02774at 2900.922 kb on + strand, within OHPLBJKB_02774at 2900.993 kb on + strand, within OHPLBJKB_02774at 2900.994 kb on - strand, within OHPLBJKB_02774at 2901.086 kb on + strand, within OHPLBJKB_02774at 2901.086 kb on + strand, within OHPLBJKB_02774at 2901.086 kb on + strand, within OHPLBJKB_02774at 2901.087 kb on - strand, within OHPLBJKB_02774at 2901.087 kb on - strand, within OHPLBJKB_02774at 2901.087 kb on - strand, within OHPLBJKB_02774at 2901.114 kb on + strandat 2901.114 kb on + strandat 2901.114 kb on + strandat 2901.114 kb on + strandat 2901.115 kb on - strandat 2901.115 kb on - strandat 2901.115 kb on - strandat 2901.142 kb on - strandat 2901.227 kb on - strandat 2901.337 kb on - strandat 2901.383 kb on + strandat 2901.390 kb on + strandat 2901.395 kb on - strandat 2901.395 kb on - strandat 2901.461 kb on - strandat 2901.479 kb on - strandat 2901.482 kb on - strandat 2901.484 kb on + strandat 2901.484 kb on + strandat 2901.485 kb on - strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.491 kb on - strandat 2901.491 kb on - strandat 2901.491 kb on - strandat 2901.501 kb on + strandat 2901.502 kb on - strandat 2901.502 kb on - strandat 2901.502 kb on - strandat 2901.506 kb on - strandat 2901.585 kb on + strandat 2901.585 kb on + strandat 2901.586 kb on - strandat 2902.929 kb on - strandat 2902.982 kb on - strandat 2903.055 kb on + strandat 2903.072 kb on + strandat 2903.089 kb on - strandat 2903.089 kb on - strandat 2903.106 kb on + strand, within OHPLBJKB_02776at 2903.106 kb on + strand, within OHPLBJKB_02776at 2903.165 kb on + strand, within OHPLBJKB_02776at 2903.253 kb on + strand, within OHPLBJKB_02776at 2903.254 kb on - strand, within OHPLBJKB_02776at 2903.254 kb on - strand, within OHPLBJKB_02776at 2903.254 kb on - strand, within OHPLBJKB_02776at 2903.433 kb on + strand, within OHPLBJKB_02776at 2903.435 kb on + strand, within OHPLBJKB_02776at 2903.435 kb on + strand, within OHPLBJKB_02776at 2903.476 kb on - strand, within OHPLBJKB_02776at 2903.512 kb on + strand, within OHPLBJKB_02776at 2903.513 kb on - strand, within OHPLBJKB_02776at 2903.569 kb on + strand, within OHPLBJKB_02776at 2903.594 kb on + strand, within OHPLBJKB_02776at 2903.595 kb on - strand, within OHPLBJKB_02776at 2903.624 kb on - strand, within OHPLBJKB_02776at 2903.666 kb on + strand, within OHPLBJKB_02776at 2903.734 kb on + strand, within OHPLBJKB_02776at 2903.749 kb on - strand, within OHPLBJKB_02776at 2903.780 kb on + strand, within OHPLBJKB_02776at 2903.780 kb on + strand, within OHPLBJKB_02776at 2903.781 kb on - strand, within OHPLBJKB_02776at 2903.781 kb on - strand, within OHPLBJKB_02776at 2903.784 kb on - strand, within OHPLBJKB_02776at 2903.784 kb on - strand, within OHPLBJKB_02776at 2903.804 kb on - strand, within OHPLBJKB_02776at 2903.823 kb on + strand, within OHPLBJKB_02776

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
2,900,576 + OHPLBJKB_02774 0.69 +0.5
2,900,576 + OHPLBJKB_02774 0.69 -0.5
2,900,576 + OHPLBJKB_02774 0.69 -0.9
2,900,577 - OHPLBJKB_02774 0.69 +0.1
2,900,577 - OHPLBJKB_02774 0.69 -0.3
2,900,620 - OHPLBJKB_02774 0.71 +0.7
2,900,691 + OHPLBJKB_02774 0.74 -0.0
2,900,692 - OHPLBJKB_02774 0.74 -2.7
2,900,692 - OHPLBJKB_02774 0.74 +0.0
2,900,692 - OHPLBJKB_02774 0.74 -0.6
2,900,693 + OHPLBJKB_02774 0.74 +0.7
2,900,693 + OHPLBJKB_02774 0.74 +0.2
2,900,693 + OHPLBJKB_02774 0.74 -0.4
2,900,693 + OHPLBJKB_02774 0.74 -0.1
2,900,693 + OHPLBJKB_02774 0.74 +3.3
2,900,693 + OHPLBJKB_02774 0.74 +0.7
2,900,694 - OHPLBJKB_02774 0.74 +0.0
2,900,694 - OHPLBJKB_02774 0.74 +0.5
2,900,727 - OHPLBJKB_02774 0.75 -0.5
2,900,784 + OHPLBJKB_02774 0.77 -0.4
2,900,784 + OHPLBJKB_02774 0.77 -1.2
2,900,785 - OHPLBJKB_02774 0.77 +0.7
2,900,837 + OHPLBJKB_02774 0.80 -0.6
2,900,838 - OHPLBJKB_02774 0.80 -0.2
2,900,846 + OHPLBJKB_02774 0.80 +0.4
2,900,847 - OHPLBJKB_02774 0.80 -0.7
2,900,851 - OHPLBJKB_02774 0.80 -0.1
2,900,851 - OHPLBJKB_02774 0.80 +0.4
2,900,851 - OHPLBJKB_02774 0.80 -0.2
2,900,886 + OHPLBJKB_02774 0.82 +0.6
2,900,907 - OHPLBJKB_02774 0.82 +0.9
2,900,922 + OHPLBJKB_02774 0.83 +0.0
2,900,922 + OHPLBJKB_02774 0.83 +0.3
2,900,922 + OHPLBJKB_02774 0.83 -0.4
2,900,993 + OHPLBJKB_02774 0.86 +0.4
2,900,994 - OHPLBJKB_02774 0.86 -0.1
2,901,086 + OHPLBJKB_02774 0.90 +0.3
2,901,086 + OHPLBJKB_02774 0.90 +1.5
2,901,086 + OHPLBJKB_02774 0.90 +0.7
2,901,087 - OHPLBJKB_02774 0.90 +0.5
2,901,087 - OHPLBJKB_02774 0.90 -0.2
2,901,087 - OHPLBJKB_02774 0.90 -0.1
2,901,114 + +0.1
2,901,114 + +0.2
2,901,114 + -0.2
2,901,114 + -1.3
2,901,115 - +0.7
2,901,115 - -0.6
2,901,115 - +1.9
2,901,142 - -0.2
2,901,227 - -0.2
2,901,337 - +1.1
2,901,383 + +0.9
2,901,390 + +0.9
2,901,395 - -0.8
2,901,395 - -1.4
2,901,461 - +0.2
2,901,479 - +0.8
2,901,482 - +0.5
2,901,484 + +1.1
2,901,484 + +1.1
2,901,485 - -0.9
2,901,490 + +0.4
2,901,490 + -0.4
2,901,490 + +0.2
2,901,490 + -1.2
2,901,490 + -0.2
2,901,490 + -0.0
2,901,491 - +0.3
2,901,491 - +0.2
2,901,491 - -0.9
2,901,501 + +0.2
2,901,502 - +0.3
2,901,502 - +0.3
2,901,502 - -0.5
2,901,506 - -0.2
2,901,585 + +0.5
2,901,585 + -0.5
2,901,586 - +0.9
2,902,929 - -0.7
2,902,982 - +0.7
2,903,055 + -0.4
2,903,072 + -0.6
2,903,089 - -0.9
2,903,089 - -0.1
2,903,106 + OHPLBJKB_02776 0.11 -0.4
2,903,106 + OHPLBJKB_02776 0.11 -0.5
2,903,165 + OHPLBJKB_02776 0.15 -0.5
2,903,253 + OHPLBJKB_02776 0.22 -0.5
2,903,254 - OHPLBJKB_02776 0.22 -1.4
2,903,254 - OHPLBJKB_02776 0.22 -0.3
2,903,254 - OHPLBJKB_02776 0.22 +0.1
2,903,433 + OHPLBJKB_02776 0.35 -0.3
2,903,435 + OHPLBJKB_02776 0.35 +0.6
2,903,435 + OHPLBJKB_02776 0.35 -0.2
2,903,476 - OHPLBJKB_02776 0.39 +0.3
2,903,512 + OHPLBJKB_02776 0.41 -0.5
2,903,513 - OHPLBJKB_02776 0.41 -1.4
2,903,569 + OHPLBJKB_02776 0.45 -0.2
2,903,594 + OHPLBJKB_02776 0.47 -1.2
2,903,595 - OHPLBJKB_02776 0.47 +0.6
2,903,624 - OHPLBJKB_02776 0.50 -0.1
2,903,666 + OHPLBJKB_02776 0.53 +0.5
2,903,734 + OHPLBJKB_02776 0.58 -0.1
2,903,749 - OHPLBJKB_02776 0.59 +0.5
2,903,780 + OHPLBJKB_02776 0.61 +1.2
2,903,780 + OHPLBJKB_02776 0.61 +0.5
2,903,781 - OHPLBJKB_02776 0.61 -0.8
2,903,781 - OHPLBJKB_02776 0.61 -0.1
2,903,784 - OHPLBJKB_02776 0.61 -1.2
2,903,784 - OHPLBJKB_02776 0.61 +0.4
2,903,804 - OHPLBJKB_02776 0.63 -0.3
2,903,823 + OHPLBJKB_02776 0.64 -0.0

Or see this region's nucleotide sequence