Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02774

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02772 and OHPLBJKB_02773 are separated by 1 nucleotidesOHPLBJKB_02773 and OHPLBJKB_02774 are separated by 10 nucleotidesOHPLBJKB_02774 and OHPLBJKB_02775 are separated by 238 nucleotides OHPLBJKB_02772: OHPLBJKB_02772 - Anaerobic dimethyl sulfoxide reductase chain C, at 2,897,399 to 2,898,262 _02772 OHPLBJKB_02773: OHPLBJKB_02773 - Anaerobic dimethyl sulfoxide reductase chain B, at 2,898,264 to 2,898,881 _02773 OHPLBJKB_02774: OHPLBJKB_02774 - Dimethyl sulfoxide reductase DmsA, at 2,898,892 to 2,901,336 _02774 OHPLBJKB_02775: OHPLBJKB_02775 - Serine--tRNA ligase, at 2,901,575 to 2,902,867 _02775 Position (kb) 2898 2899 2900 2901 2902Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2898.076 kb on + strand, within OHPLBJKB_02772at 2898.076 kb on + strand, within OHPLBJKB_02772at 2898.077 kb on - strand, within OHPLBJKB_02772at 2898.077 kb on - strand, within OHPLBJKB_02772at 2898.191 kb on - strandat 2898.203 kb on + strandat 2898.353 kb on + strand, within OHPLBJKB_02773at 2898.494 kb on - strand, within OHPLBJKB_02773at 2898.515 kb on + strand, within OHPLBJKB_02773at 2898.535 kb on + strand, within OHPLBJKB_02773at 2898.536 kb on - strand, within OHPLBJKB_02773at 2898.564 kb on - strand, within OHPLBJKB_02773at 2898.626 kb on + strand, within OHPLBJKB_02773at 2898.654 kb on - strand, within OHPLBJKB_02773at 2898.656 kb on + strand, within OHPLBJKB_02773at 2898.657 kb on - strand, within OHPLBJKB_02773at 2898.697 kb on + strand, within OHPLBJKB_02773at 2898.697 kb on + strand, within OHPLBJKB_02773at 2898.698 kb on - strand, within OHPLBJKB_02773at 2898.700 kb on + strand, within OHPLBJKB_02773at 2898.758 kb on - strand, within OHPLBJKB_02773at 2898.763 kb on + strand, within OHPLBJKB_02773at 2898.764 kb on - strand, within OHPLBJKB_02773at 2898.764 kb on - strand, within OHPLBJKB_02773at 2898.893 kb on + strandat 2898.893 kb on + strandat 2898.893 kb on + strandat 2898.893 kb on + strandat 2898.894 kb on - strandat 2898.921 kb on + strandat 2898.921 kb on + strandat 2898.922 kb on - strandat 2898.922 kb on - strandat 2898.970 kb on + strandat 2898.971 kb on - strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.979 kb on - strandat 2898.979 kb on - strandat 2898.979 kb on - strandat 2899.017 kb on - strandat 2899.230 kb on + strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.350 kb on + strand, within OHPLBJKB_02774at 2899.443 kb on + strand, within OHPLBJKB_02774at 2899.444 kb on - strand, within OHPLBJKB_02774at 2899.446 kb on - strand, within OHPLBJKB_02774at 2899.547 kb on + strand, within OHPLBJKB_02774at 2899.548 kb on - strand, within OHPLBJKB_02774at 2899.637 kb on + strand, within OHPLBJKB_02774at 2899.638 kb on - strand, within OHPLBJKB_02774at 2899.638 kb on - strand, within OHPLBJKB_02774at 2899.647 kb on + strand, within OHPLBJKB_02774at 2899.647 kb on + strand, within OHPLBJKB_02774at 2899.691 kb on + strand, within OHPLBJKB_02774at 2899.692 kb on - strand, within OHPLBJKB_02774at 2899.692 kb on - strand, within OHPLBJKB_02774at 2899.699 kb on - strand, within OHPLBJKB_02774at 2899.699 kb on - strand, within OHPLBJKB_02774at 2899.828 kb on - strand, within OHPLBJKB_02774at 2899.998 kb on + strand, within OHPLBJKB_02774at 2899.998 kb on + strand, within OHPLBJKB_02774at 2899.998 kb on + strand, within OHPLBJKB_02774at 2900.063 kb on + strand, within OHPLBJKB_02774at 2900.064 kb on - strand, within OHPLBJKB_02774at 2900.064 kb on - strand, within OHPLBJKB_02774at 2900.064 kb on - strand, within OHPLBJKB_02774at 2900.098 kb on - strand, within OHPLBJKB_02774at 2900.208 kb on + strand, within OHPLBJKB_02774at 2900.317 kb on - strand, within OHPLBJKB_02774at 2900.318 kb on + strand, within OHPLBJKB_02774at 2900.318 kb on + strand, within OHPLBJKB_02774at 2900.319 kb on - strand, within OHPLBJKB_02774at 2900.319 kb on - strand, within OHPLBJKB_02774at 2900.325 kb on + strand, within OHPLBJKB_02774at 2900.328 kb on - strand, within OHPLBJKB_02774at 2900.384 kb on + strand, within OHPLBJKB_02774at 2900.388 kb on + strand, within OHPLBJKB_02774at 2900.433 kb on - strand, within OHPLBJKB_02774at 2900.517 kb on - strand, within OHPLBJKB_02774at 2900.548 kb on - strand, within OHPLBJKB_02774at 2900.573 kb on + strand, within OHPLBJKB_02774at 2900.573 kb on + strand, within OHPLBJKB_02774at 2900.573 kb on + strand, within OHPLBJKB_02774at 2900.574 kb on - strand, within OHPLBJKB_02774at 2900.576 kb on + strand, within OHPLBJKB_02774at 2900.576 kb on + strand, within OHPLBJKB_02774at 2900.576 kb on + strand, within OHPLBJKB_02774at 2900.577 kb on - strand, within OHPLBJKB_02774at 2900.577 kb on - strand, within OHPLBJKB_02774at 2900.620 kb on - strand, within OHPLBJKB_02774at 2900.691 kb on + strand, within OHPLBJKB_02774at 2900.692 kb on - strand, within OHPLBJKB_02774at 2900.692 kb on - strand, within OHPLBJKB_02774at 2900.692 kb on - strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.693 kb on + strand, within OHPLBJKB_02774at 2900.694 kb on - strand, within OHPLBJKB_02774at 2900.694 kb on - strand, within OHPLBJKB_02774at 2900.727 kb on - strand, within OHPLBJKB_02774at 2900.784 kb on + strand, within OHPLBJKB_02774at 2900.784 kb on + strand, within OHPLBJKB_02774at 2900.785 kb on - strand, within OHPLBJKB_02774at 2900.837 kb on + strand, within OHPLBJKB_02774at 2900.838 kb on - strand, within OHPLBJKB_02774at 2900.846 kb on + strand, within OHPLBJKB_02774at 2900.847 kb on - strand, within OHPLBJKB_02774at 2900.851 kb on - strand, within OHPLBJKB_02774at 2900.851 kb on - strand, within OHPLBJKB_02774at 2900.851 kb on - strand, within OHPLBJKB_02774at 2900.886 kb on + strand, within OHPLBJKB_02774at 2900.907 kb on - strand, within OHPLBJKB_02774at 2900.922 kb on + strand, within OHPLBJKB_02774at 2900.922 kb on + strand, within OHPLBJKB_02774at 2900.922 kb on + strand, within OHPLBJKB_02774at 2900.993 kb on + strand, within OHPLBJKB_02774at 2900.994 kb on - strand, within OHPLBJKB_02774at 2901.086 kb on + strand, within OHPLBJKB_02774at 2901.086 kb on + strand, within OHPLBJKB_02774at 2901.086 kb on + strand, within OHPLBJKB_02774at 2901.087 kb on - strand, within OHPLBJKB_02774at 2901.087 kb on - strand, within OHPLBJKB_02774at 2901.087 kb on - strand, within OHPLBJKB_02774at 2901.114 kb on + strandat 2901.114 kb on + strandat 2901.114 kb on + strandat 2901.114 kb on + strandat 2901.115 kb on - strandat 2901.115 kb on - strandat 2901.115 kb on - strandat 2901.142 kb on - strandat 2901.227 kb on - strandat 2901.337 kb on - strandat 2901.383 kb on + strandat 2901.390 kb on + strandat 2901.395 kb on - strandat 2901.395 kb on - strandat 2901.461 kb on - strandat 2901.479 kb on - strandat 2901.482 kb on - strandat 2901.484 kb on + strandat 2901.484 kb on + strandat 2901.485 kb on - strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.490 kb on + strandat 2901.491 kb on - strandat 2901.491 kb on - strandat 2901.491 kb on - strandat 2901.501 kb on + strandat 2901.502 kb on - strandat 2901.502 kb on - strandat 2901.502 kb on - strandat 2901.506 kb on - strandat 2901.585 kb on + strandat 2901.585 kb on + strandat 2901.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,898,076 + OHPLBJKB_02772 0.78 +0.5
2,898,076 + OHPLBJKB_02772 0.78 -1.0
2,898,077 - OHPLBJKB_02772 0.78 -0.5
2,898,077 - OHPLBJKB_02772 0.78 +0.1
2,898,191 - -0.6
2,898,203 + +1.0
2,898,353 + OHPLBJKB_02773 0.14 -0.7
2,898,494 - OHPLBJKB_02773 0.37 +1.0
2,898,515 + OHPLBJKB_02773 0.41 +0.1
2,898,535 + OHPLBJKB_02773 0.44 -0.9
2,898,536 - OHPLBJKB_02773 0.44 -0.1
2,898,564 - OHPLBJKB_02773 0.49 -0.1
2,898,626 + OHPLBJKB_02773 0.59 -0.4
2,898,654 - OHPLBJKB_02773 0.63 -1.7
2,898,656 + OHPLBJKB_02773 0.63 -1.2
2,898,657 - OHPLBJKB_02773 0.64 +0.5
2,898,697 + OHPLBJKB_02773 0.70 -0.9
2,898,697 + OHPLBJKB_02773 0.70 +0.5
2,898,698 - OHPLBJKB_02773 0.70 -1.1
2,898,700 + OHPLBJKB_02773 0.71 +0.1
2,898,758 - OHPLBJKB_02773 0.80 -0.5
2,898,763 + OHPLBJKB_02773 0.81 +0.8
2,898,764 - OHPLBJKB_02773 0.81 -0.8
2,898,764 - OHPLBJKB_02773 0.81 -0.1
2,898,893 + +0.1
2,898,893 + +0.1
2,898,893 + +0.8
2,898,893 + +0.1
2,898,894 - -0.2
2,898,921 + -0.1
2,898,921 + +0.2
2,898,922 - -0.3
2,898,922 - +1.7
2,898,970 + -0.0
2,898,971 - -0.9
2,898,978 + +0.2
2,898,978 + +0.3
2,898,978 + +0.1
2,898,978 + -0.6
2,898,978 + +0.2
2,898,979 - +0.7
2,898,979 - -0.6
2,898,979 - +0.7
2,899,017 - -0.0
2,899,230 + OHPLBJKB_02774 0.14 +1.3
2,899,231 - OHPLBJKB_02774 0.14 -0.2
2,899,231 - OHPLBJKB_02774 0.14 -0.0
2,899,231 - OHPLBJKB_02774 0.14 -0.2
2,899,231 - OHPLBJKB_02774 0.14 -0.0
2,899,350 + OHPLBJKB_02774 0.19 -0.2
2,899,443 + OHPLBJKB_02774 0.23 -0.5
2,899,444 - OHPLBJKB_02774 0.23 +0.1
2,899,446 - OHPLBJKB_02774 0.23 +1.6
2,899,547 + OHPLBJKB_02774 0.27 +0.1
2,899,548 - OHPLBJKB_02774 0.27 -0.7
2,899,637 + OHPLBJKB_02774 0.30 -0.2
2,899,638 - OHPLBJKB_02774 0.31 -0.4
2,899,638 - OHPLBJKB_02774 0.31 +0.0
2,899,647 + OHPLBJKB_02774 0.31 +0.9
2,899,647 + OHPLBJKB_02774 0.31 -0.2
2,899,691 + OHPLBJKB_02774 0.33 -0.2
2,899,692 - OHPLBJKB_02774 0.33 -0.2
2,899,692 - OHPLBJKB_02774 0.33 -0.0
2,899,699 - OHPLBJKB_02774 0.33 -2.1
2,899,699 - OHPLBJKB_02774 0.33 +1.4
2,899,828 - OHPLBJKB_02774 0.38 -0.2
2,899,998 + OHPLBJKB_02774 0.45 +0.8
2,899,998 + OHPLBJKB_02774 0.45 -0.2
2,899,998 + OHPLBJKB_02774 0.45 +0.6
2,900,063 + OHPLBJKB_02774 0.48 -0.9
2,900,064 - OHPLBJKB_02774 0.48 +0.3
2,900,064 - OHPLBJKB_02774 0.48 +1.2
2,900,064 - OHPLBJKB_02774 0.48 -0.3
2,900,098 - OHPLBJKB_02774 0.49 +1.4
2,900,208 + OHPLBJKB_02774 0.54 -0.2
2,900,317 - OHPLBJKB_02774 0.58 -0.2
2,900,318 + OHPLBJKB_02774 0.58 +0.5
2,900,318 + OHPLBJKB_02774 0.58 +0.2
2,900,319 - OHPLBJKB_02774 0.58 +0.5
2,900,319 - OHPLBJKB_02774 0.58 -0.2
2,900,325 + OHPLBJKB_02774 0.59 -0.9
2,900,328 - OHPLBJKB_02774 0.59 +0.4
2,900,384 + OHPLBJKB_02774 0.61 +0.3
2,900,388 + OHPLBJKB_02774 0.61 -0.2
2,900,433 - OHPLBJKB_02774 0.63 -0.6
2,900,517 - OHPLBJKB_02774 0.66 -0.3
2,900,548 - OHPLBJKB_02774 0.68 -0.7
2,900,573 + OHPLBJKB_02774 0.69 -0.3
2,900,573 + OHPLBJKB_02774 0.69 -0.6
2,900,573 + OHPLBJKB_02774 0.69 +1.7
2,900,574 - OHPLBJKB_02774 0.69 +0.4
2,900,576 + OHPLBJKB_02774 0.69 +0.5
2,900,576 + OHPLBJKB_02774 0.69 -0.5
2,900,576 + OHPLBJKB_02774 0.69 -0.9
2,900,577 - OHPLBJKB_02774 0.69 +0.1
2,900,577 - OHPLBJKB_02774 0.69 -0.3
2,900,620 - OHPLBJKB_02774 0.71 +0.7
2,900,691 + OHPLBJKB_02774 0.74 -0.0
2,900,692 - OHPLBJKB_02774 0.74 -2.7
2,900,692 - OHPLBJKB_02774 0.74 +0.0
2,900,692 - OHPLBJKB_02774 0.74 -0.6
2,900,693 + OHPLBJKB_02774 0.74 +0.7
2,900,693 + OHPLBJKB_02774 0.74 +0.2
2,900,693 + OHPLBJKB_02774 0.74 -0.4
2,900,693 + OHPLBJKB_02774 0.74 -0.1
2,900,693 + OHPLBJKB_02774 0.74 +3.3
2,900,693 + OHPLBJKB_02774 0.74 +0.7
2,900,694 - OHPLBJKB_02774 0.74 +0.0
2,900,694 - OHPLBJKB_02774 0.74 +0.5
2,900,727 - OHPLBJKB_02774 0.75 -0.5
2,900,784 + OHPLBJKB_02774 0.77 -0.4
2,900,784 + OHPLBJKB_02774 0.77 -1.2
2,900,785 - OHPLBJKB_02774 0.77 +0.7
2,900,837 + OHPLBJKB_02774 0.80 -0.6
2,900,838 - OHPLBJKB_02774 0.80 -0.2
2,900,846 + OHPLBJKB_02774 0.80 +0.4
2,900,847 - OHPLBJKB_02774 0.80 -0.7
2,900,851 - OHPLBJKB_02774 0.80 -0.1
2,900,851 - OHPLBJKB_02774 0.80 +0.4
2,900,851 - OHPLBJKB_02774 0.80 -0.2
2,900,886 + OHPLBJKB_02774 0.82 +0.6
2,900,907 - OHPLBJKB_02774 0.82 +0.9
2,900,922 + OHPLBJKB_02774 0.83 +0.0
2,900,922 + OHPLBJKB_02774 0.83 +0.3
2,900,922 + OHPLBJKB_02774 0.83 -0.4
2,900,993 + OHPLBJKB_02774 0.86 +0.4
2,900,994 - OHPLBJKB_02774 0.86 -0.1
2,901,086 + OHPLBJKB_02774 0.90 +0.3
2,901,086 + OHPLBJKB_02774 0.90 +1.5
2,901,086 + OHPLBJKB_02774 0.90 +0.7
2,901,087 - OHPLBJKB_02774 0.90 +0.5
2,901,087 - OHPLBJKB_02774 0.90 -0.2
2,901,087 - OHPLBJKB_02774 0.90 -0.1
2,901,114 + +0.1
2,901,114 + +0.2
2,901,114 + -0.2
2,901,114 + -1.3
2,901,115 - +0.7
2,901,115 - -0.6
2,901,115 - +1.9
2,901,142 - -0.2
2,901,227 - -0.2
2,901,337 - +1.1
2,901,383 + +0.9
2,901,390 + +0.9
2,901,395 - -0.8
2,901,395 - -1.4
2,901,461 - +0.2
2,901,479 - +0.8
2,901,482 - +0.5
2,901,484 + +1.1
2,901,484 + +1.1
2,901,485 - -0.9
2,901,490 + +0.4
2,901,490 + -0.4
2,901,490 + +0.2
2,901,490 + -1.2
2,901,490 + -0.2
2,901,490 + -0.0
2,901,491 - +0.3
2,901,491 - +0.2
2,901,491 - -0.9
2,901,501 + +0.2
2,901,502 - +0.3
2,901,502 - +0.3
2,901,502 - -0.5
2,901,506 - -0.2
2,901,585 + +0.5
2,901,585 + -0.5
2,901,586 - +0.9

Or see this region's nucleotide sequence